RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 WTIPA6NIX2 430 aaPredicted RBP8.1□□□□□ -1.11
LINC00643-204ENST00000555934 NOTOA8MTQ0 251 aa8.1□□□□□ -1.11
LINC00643-204ENST00000555934 C22orf46C9J442 243 aa8.1□□□□□ -1.11
LINC00643-204ENST00000555934 ARVCFO00192 962 aa8.1□□□□□ -1.11
LINC00643-204ENST00000555934 CHRNEQ04844 493 aa8.1□□□□□ -1.11
LINC00643-204ENST00000555934 SPPL2CQ8IUH8 684 aa8.1□□□□□ -1.11
LINC00643-204ENST00000555934 IGSF22Q8N9C0 903 aa8.1□□□□□ -1.11
LINC00643-204ENST00000555934 PCDH12Q9NPG4 1184 aa8.1□□□□□ -1.11
LINC00643-204ENST00000555934 SAMD15Q9P1V8 674 aa8.1□□□□□ -1.11
LINC00643-204ENST00000555934 KRTAP4-8A0A0G2JLE6 195 aa8.09□□□□□ -1.11
LINC00643-204ENST00000555934 A0A1W2PQJ5 194 aa8.09□□□□□ -1.11
LINC00643-204ENST00000555934 FITM1A5D6W6 292 aa8.09□□□□□ -1.11
LINC00643-204ENST00000555934 NRDCO43847 1150 aa8.09□□□□□ -1.11
LINC00643-204ENST00000555934 PYGMP11217 842 aa8.09□□□□□ -1.11
LINC00643-204ENST00000555934 KCNA6P17658 529 aa8.09□□□□□ -1.11
LINC00643-204ENST00000555934 NAT1P18440 290 aa8.09□□□□□ -1.11
LINC00643-204ENST00000555934 IBSPP21815 317 aaPredicted RBP8.09□□□□□ -1.11
LINC00643-204ENST00000555934 GDNFP39905 211 aa8.09□□□□□ -1.11
LINC00643-204ENST00000555934 STAT3P40763 770 aa8.09□□□□□ -1.11
LINC00643-204ENST00000555934 MVKQ03426 396 aa8.09□□□□□ -1.11
LINC00643-204ENST00000555934 CDCA2Q69YH5 1023 aaPredicted RBP8.09□□□□□ -1.11
LINC00643-204ENST00000555934 ZCCHC8Q6NZY4 707 aaKnown RBP8.09□□□□□ -1.11
LINC00643-204ENST00000555934 PKN3Q6P5Z2 889 aa8.09□□□□□ -1.11
LINC00643-204ENST00000555934 GALNT18Q6P9A2 607 aa8.09□□□□□ -1.11
LINC00643-204ENST00000555934 RNF180Q86T96 592 aa8.09□□□□□ -1.11
LINC00643-204ENST00000555934 CISD2Q8N5K1 135 aaKnown RBP8.09□□□□□ -1.11
LINC00643-204ENST00000555934 LZTR1Q8N653 840 aa8.09□□□□□ -1.11
LINC00643-204ENST00000555934 CCDC120Q96HB5 630 aa8.09□□□□□ -1.11
LINC00643-204ENST00000555934 PUS7Q96PZ0 661 aaKnown RBP8.09□□□□□ -1.11
LINC00643-204ENST00000555934 CAAP1Q9H8G2 361 aa8.09□□□□□ -1.11
LINC00643-204ENST00000555934 hCG_2014768A0A024R1R8 64 aa8.08□□□□□ -1.12
LINC00643-204ENST00000555934 FAM47E-STBD1D6RA91 191 aa8.08□□□□□ -1.12
LINC00643-204ENST00000555934 COL6A2P12110 1019 aa8.08□□□□□ -1.12
LINC00643-204ENST00000555934 FLT3P36888 993 aa8.08□□□□□ -1.12
LINC00643-204ENST00000555934 GTF2A2P52657 109 aa8.08□□□□□ -1.12
LINC00643-204ENST00000555934 AMPD3Q01432 767 aa8.08□□□□□ -1.12
LINC00643-204ENST00000555934 SKOR2Q2VWA4 1001 aaPredicted RBP8.08□□□□□ -1.12
LINC00643-204ENST00000555934 UBE2R2Q712K3 238 aaPredicted RBP8.08□□□□□ -1.12
LINC00643-204ENST00000555934 MYLIPQ8WY64 445 aa8.08□□□□□ -1.12
LINC00643-204ENST00000555934 MTA3Q9BTC8 594 aa8.08□□□□□ -1.12
LINC00643-204ENST00000555934 MTFR1LQ9H019 292 aa8.08□□□□□ -1.12
LINC00643-204ENST00000555934 CDIP1Q9H305 208 aa8.08□□□□□ -1.12
LINC00643-204ENST00000555934 SP110Q9HB58 689 aa8.08□□□□□ -1.12
LINC00643-204ENST00000555934 CATSPERZQ9NTU4 200 aa8.08□□□□□ -1.12
LINC00643-204ENST00000555934 CTNND2Q9UQB3 1225 aa8.08□□□□□ -1.12
LINC00643-204ENST00000555934 CCDC66A2RUB6 948 aa8.07□□□□□ -1.12
LINC00643-204ENST00000555934 GLRX3O76003 335 aaKnown RBP8.07□□□□□ -1.12
LINC00643-204ENST00000555934 HPXP02790 462 aa8.07□□□□□ -1.12
LINC00643-204ENST00000555934 CKMP06732 381 aa8.07□□□□□ -1.12
LINC00643-204ENST00000555934 VIL1P09327 827 aaKnown RBP8.07□□□□□ -1.12
LINC00643-204ENST00000555934 RAC2P15153 192 aa8.07□□□□□ -1.12
LINC00643-204ENST00000555934 ST5P78524 1137 aa8.07□□□□□ -1.12
LINC00643-204ENST00000555934 CYP4F8P98187 520 aa8.07□□□□□ -1.12
LINC00643-204ENST00000555934 SEPT7Q16181 437 aaKnown RBP8.07□□□□□ -1.12
LINC00643-204ENST00000555934 KRT26Q7Z3Y9 468 aa8.07□□□□□ -1.12
LINC00643-204ENST00000555934 DDX53Q86TM3 631 aaKnown RBP8.07□□□□□ -1.12
LINC00643-204ENST00000555934 PPM1KQ8N3J5 372 aa8.07□□□□□ -1.12
LINC00643-204ENST00000555934 ZCRB1Q8TBF4 217 aaKnown RBP8.07□□□□□ -1.12
LINC00643-204ENST00000555934 PLEKHO2Q8TD55 490 aa8.07□□□□□ -1.12
LINC00643-204ENST00000555934 FBXW5Q969U6 566 aa8.07□□□□□ -1.12
LINC00643-204ENST00000555934 ASIC4Q96FT7 647 aa8.07□□□□□ -1.12
LINC00643-204ENST00000555934 WNK4Q96J92 1243 aa8.07□□□□□ -1.12
LINC00643-204ENST00000555934 RXFP1Q9HBX9 757 aa8.07□□□□□ -1.12
LINC00643-204ENST00000555934 MAPRE3Q9UPY8 281 aa8.07□□□□□ -1.12
LINC00643-204ENST00000555934 B4E1Z4 1266 aa8.06□□□□□ -1.12
LINC00643-204ENST00000555934 M0R2C6 588 aa8.06□□□□□ -1.12
LINC00643-204ENST00000555934 NTRK1P04629 796 aa8.06□□□□□ -1.12
LINC00643-204ENST00000555934 SDHBP21912 280 aa8.06□□□□□ -1.12
LINC00643-204ENST00000555934 SOX5P35711 763 aa8.06□□□□□ -1.12
LINC00643-204ENST00000555934 BICRALQ6AI39 1079 aa8.06□□□□□ -1.12
LINC00643-204ENST00000555934 CBLL1Q75N03 491 aa8.06□□□□□ -1.12
LINC00643-204ENST00000555934 STRA8Q7Z7C7 330 aa8.06□□□□□ -1.12
LINC00643-204ENST00000555934 PDLIM7Q9NR12 457 aa8.06□□□□□ -1.12
LINC00643-204ENST00000555934 ADGRE2Q9UHX3 823 aa8.06□□□□□ -1.12
LINC00643-204ENST00000555934 ACSL6Q9UKU0 697 aa8.06□□□□□ -1.12
LINC00643-204ENST00000555934 CBLCQ9ULV8 474 aa8.06□□□□□ -1.12
LINC00643-204ENST00000555934 COA3Q9Y2R0 106 aaPredicted RBP8.06□□□□□ -1.12
LINC00643-204ENST00000555934 H7BY64 318 aa8.05□□□□□ -1.12
LINC00643-204ENST00000555934 KCNK3O14649 394 aa8.05□□□□□ -1.12
LINC00643-204ENST00000555934 GNAT1P11488 350 aa8.05□□□□□ -1.12
LINC00643-204ENST00000555934 KRT15P19012 456 aa8.05□□□□□ -1.12
LINC00643-204ENST00000555934 ANAPC15P60006 121 aa8.05□□□□□ -1.12
LINC00643-204ENST00000555934 IGBP1P78318 339 aa8.05□□□□□ -1.12
LINC00643-204ENST00000555934 NFKB2Q00653 900 aa8.05□□□□□ -1.12
LINC00643-204ENST00000555934 STRN3Q13033 797 aa8.05□□□□□ -1.12
LINC00643-204ENST00000555934 FAM47CQ5HY64 1035 aa8.05□□□□□ -1.12
LINC00643-204ENST00000555934 AHI1Q8N157 1196 aa8.05□□□□□ -1.12
LINC00643-204ENST00000555934 NXPE1Q8N323 547 aa8.05□□□□□ -1.12
LINC00643-204ENST00000555934 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP8.05□□□□□ -1.12
LINC00643-204ENST00000555934 NOP58Q9Y2X3 529 aaKnown RBP8.05□□□□□ -1.12
LINC00643-204ENST00000555934 CORO7P57737 925 aa8.04□□□□□ -1.12
LINC00643-204ENST00000555934 EVA1CP58658 441 aa8.04□□□□□ -1.12
LINC00643-204ENST00000555934 NR0B2Q15466 257 aa8.04□□□□□ -1.12
LINC00643-204ENST00000555934 TMEM177Q53S58 311 aa8.04□□□□□ -1.12
LINC00643-204ENST00000555934 FYB2Q5VWT5 728 aa8.04□□□□□ -1.12
LINC00643-204ENST00000555934 MCTP1Q6DN14 999 aa8.04□□□□□ -1.12
LINC00643-204ENST00000555934 DDX46Q7L014 1031 aaKnown RBP8.04□□□□□ -1.12
LINC00643-204ENST00000555934 NLRX1Q86UT6 975 aa8.04□□□□□ -1.12
LINC00643-204ENST00000555934 ANKRD13AQ8IZ07 590 aa8.04□□□□□ -1.12
LINC00643-204ENST00000555934 NLGN2Q8NFZ4 835 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms