RNA–Protein interactions for RNA: ENST00000555317.5

SRP54-206, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 644 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-206ENST00000555317 UPF2Q9HAU5 1272 aaKnown RBP13.9□□□□□ -0.18
SRP54-206ENST00000555317 NCOA5Q9HCD5 579 aaKnown RBP13.9□□□□□ -0.18
SRP54-206ENST00000555317 FAM217BQ9NTX9 383 aaPredicted RBP13.9□□□□□ -0.18
SRP54-206ENST00000555317 BARHL2Q9NY43 387 aa13.9□□□□□ -0.18
SRP54-206ENST00000555317 STAM2O75886 525 aa13.89□□□□□ -0.19
SRP54-206ENST00000555317 CABYRO75952 493 aa13.89□□□□□ -0.19
SRP54-206ENST00000555317 CDKL5O76039 1030 aa13.89□□□□□ -0.19
SRP54-206ENST00000555317 SCG2P13521 617 aa13.89□□□□□ -0.19
SRP54-206ENST00000555317 PFKFB3Q16875 520 aaPredicted RBP13.89□□□□□ -0.19
SRP54-206ENST00000555317 C8orf34Q49A92 452 aa13.89□□□□□ -0.19
SRP54-206ENST00000555317 PPP4R3CPQ6ZMV5 832 aa13.89□□□□□ -0.19
SRP54-206ENST00000555317 VSIG10LQ86VR7 867 aa13.89□□□□□ -0.19
SRP54-206ENST00000555317 TEX2Q8IWB9 1127 aa13.89□□□□□ -0.19
SRP54-206ENST00000555317 PHKBQ93100 1093 aa13.89□□□□□ -0.19
SRP54-206ENST00000555317 LARP6Q9BRS8 491 aaKnown RBP13.89□□□□□ -0.19
SRP54-206ENST00000555317 POLR3EQ9NVU0 708 aa13.89□□□□□ -0.19
SRP54-206ENST00000555317 ZMYND8Q9ULU4 1186 aaPredicted RBP13.89□□□□□ -0.19
SRP54-206ENST00000555317 ELP1O95163 1332 aa13.89□□□□□ -0.19
SRP54-206ENST00000555317 MROH7Q68CQ1 1323 aa13.89□□□□□ -0.19
SRP54-206ENST00000555317 TRIOBPQ9H2D6 2365 aa13.88□□□□□ -0.19
SRP54-206ENST00000555317 A0A0U1RQG5 324 aaPredicted RBP13.88□□□□□ -0.19
SRP54-206ENST00000555317 SMCO2A6NFE2 343 aa13.88□□□□□ -0.19
SRP54-206ENST00000555317 STXBP3O00186 592 aa13.88□□□□□ -0.19
SRP54-206ENST00000555317 MEIS2O14770 477 aa13.88□□□□□ -0.19
SRP54-206ENST00000555317 PRPF3O43395 683 aaKnown RBP13.88□□□□□ -0.19
SRP54-206ENST00000555317 PQBP1O60828 265 aaKnown RBP13.88□□□□□ -0.19
SRP54-206ENST00000555317 SEC24BO95487 1268 aa13.88□□□□□ -0.19
SRP54-206ENST00000555317 GH1P01241 217 aa13.88□□□□□ -0.19
SRP54-206ENST00000555317 MYL3P08590 195 aa13.88□□□□□ -0.19
SRP54-206ENST00000555317 IFNAR1P17181 557 aa13.88□□□□□ -0.19
SRP54-206ENST00000555317 SSRP1Q08945 709 aaKnown RBP13.88□□□□□ -0.19
SRP54-206ENST00000555317 UBE2SQ16763 222 aa13.88□□□□□ -0.19
SRP54-206ENST00000555317 TRIM60Q495X7 471 aa13.88□□□□□ -0.19
SRP54-206ENST00000555317 XRRA1Q6P2D8 792 aa13.88□□□□□ -0.19
SRP54-206ENST00000555317 CCDC148Q8NFR7 591 aa13.88□□□□□ -0.19
SRP54-206ENST00000555317 IL31RAQ8NI17 732 aa13.88□□□□□ -0.19
SRP54-206ENST00000555317 RNF26Q9BY78 433 aaPredicted RBP13.88□□□□□ -0.19
SRP54-206ENST00000555317 SLKQ9H2G2 1235 aaPredicted RBP13.88□□□□□ -0.19
SRP54-206ENST00000555317 RIC8AQ9NPQ8 531 aa13.88□□□□□ -0.19
SRP54-206ENST00000555317 PRDM5Q9NQX1 630 aaPredicted RBP13.88□□□□□ -0.19
SRP54-206ENST00000555317 MYH7BA7E2Y1 1941 aa13.88□□□□□ -0.19
SRP54-206ENST00000555317 FRMPD4Q14CM0 1322 aa13.88□□□□□ -0.19
SRP54-206ENST00000555317 DCDC2CA8MYV0 355 aa13.87□□□□□ -0.19
SRP54-206ENST00000555317 ARIH2O95376 493 aa13.87□□□□□ -0.19
SRP54-206ENST00000555317 FOSP01100 380 aaPredicted RBP13.87□□□□□ -0.19
SRP54-206ENST00000555317 PTGS1P23219 599 aa13.87□□□□□ -0.19
SRP54-206ENST00000555317 NEK4P51957 841 aa13.87□□□□□ -0.19
SRP54-206ENST00000555317 NKX3-2P78367 333 aa13.87□□□□□ -0.19
SRP54-206ENST00000555317 IRX5P78411 483 aaPredicted RBP13.87□□□□□ -0.19
SRP54-206ENST00000555317 SNX17Q15036 470 aa13.87□□□□□ -0.19
SRP54-206ENST00000555317 LY6KQ17RY6 165 aa13.87□□□□□ -0.19
SRP54-206ENST00000555317 TMEM63BQ5T3F8 832 aa13.87□□□□□ -0.19
SRP54-206ENST00000555317 C1orf53Q5VUE5 145 aa13.87□□□□□ -0.19
SRP54-206ENST00000555317 PCNX4Q63HM2 1172 aa13.87□□□□□ -0.19
SRP54-206ENST00000555317 CCSAPQ6IQ19 270 aaPredicted RBP13.87□□□□□ -0.19
SRP54-206ENST00000555317 CXCL17Q6UXB2 119 aa13.87□□□□□ -0.19
SRP54-206ENST00000555317 COPS5Q92905 334 aa13.87□□□□□ -0.19
SRP54-206ENST00000555317 ALDH8A1Q9H2A2 487 aaPredicted RBP13.87□□□□□ -0.19
SRP54-206ENST00000555317 C6orf50Q9HD87 102 aa13.87□□□□□ -0.19
SRP54-206ENST00000555317 CTAGE5O15320 804 aa13.86□□□□□ -0.19
SRP54-206ENST00000555317 KPNA6O60684 536 aa13.86□□□□□ -0.19
SRP54-206ENST00000555317 PPFIA3O75145 1194 aa13.86□□□□□ -0.19
SRP54-206ENST00000555317 TGFB3P10600 412 aa13.86□□□□□ -0.19
SRP54-206ENST00000555317 SYN1P17600 705 aa13.86□□□□□ -0.19
SRP54-206ENST00000555317 GNA11P29992 359 aa13.86□□□□□ -0.19
SRP54-206ENST00000555317 AK2P54819 239 aa13.86□□□□□ -0.19
SRP54-206ENST00000555317 LAMC2Q13753 1193 aa13.86□□□□□ -0.19
SRP54-206ENST00000555317 CCDC62Q6P9F0 684 aa13.86□□□□□ -0.19
SRP54-206ENST00000555317 NLRX1Q86UT6 975 aa13.86□□□□□ -0.19
SRP54-206ENST00000555317 DHX37Q8IY37 1157 aaKnown RBP13.86□□□□□ -0.19
SRP54-206ENST00000555317 BICD2Q8TD16 824 aa13.86□□□□□ -0.19
SRP54-206ENST00000555317 LBHD1Q9BQE6 289 aaPredicted RBP13.86□□□□□ -0.19
SRP54-206ENST00000555317 DDX41Q9UJV9 622 aaKnown RBP13.86□□□□□ -0.19
SRP54-206ENST00000555317 PCDHA6Q9UN73 950 aa13.86□□□□□ -0.19
SRP54-206ENST00000555317 PCDHA8Q9Y5H6 950 aa13.86□□□□□ -0.19
SRP54-206ENST00000555317 TLR3O15455 904 aaKnown RBP13.85□□□□□ -0.19
SRP54-206ENST00000555317 DEXIO95424 95 aa13.85□□□□□ -0.19
SRP54-206ENST00000555317 CLTBP09497 229 aa13.85□□□□□ -0.19
SRP54-206ENST00000555317 TLE2Q04725 743 aa13.85□□□□□ -0.19
SRP54-206ENST00000555317 AP3B2Q13367 1082 aa13.85□□□□□ -0.19
SRP54-206ENST00000555317 NTRK3Q16288 839 aa13.85□□□□□ -0.19
SRP54-206ENST00000555317 MCTP2Q6DN12 878 aa13.85□□□□□ -0.19
SRP54-206ENST00000555317 TYW1BQ6NUM6 668 aa13.85□□□□□ -0.19
SRP54-206ENST00000555317 CHRDL2Q6WN34 429 aa13.85□□□□□ -0.19
SRP54-206ENST00000555317 REXO1Q8N1G1 1221 aaKnown RBP13.85□□□□□ -0.19
SRP54-206ENST00000555317 IL17RAQ96F46 866 aa13.85□□□□□ -0.19
SRP54-206ENST00000555317 ZFP91Q96JP5 570 aaPredicted RBP13.85□□□□□ -0.19
SRP54-206ENST00000555317 CDHR1Q96JP9 859 aa13.85□□□□□ -0.19
SRP54-206ENST00000555317 MTG1Q9BT17 334 aaPredicted RBP13.85□□□□□ -0.19
SRP54-206ENST00000555317 SEZ6LQ9BYH1 1024 aa13.85□□□□□ -0.19
SRP54-206ENST00000555317 C22orf23Q9BZE7 217 aa13.85□□□□□ -0.19
SRP54-206ENST00000555317 MLXIPQ9HAP2 919 aa13.85□□□□□ -0.19
SRP54-206ENST00000555317 RTEL1Q9NZ71 1219 aa13.85□□□□□ -0.19
SRP54-206ENST00000555317 ESYT2A0FGR8 921 aa13.84□□□□□ -0.19
SRP54-206ENST00000555317 A6NJR5 290 aa13.84□□□□□ -0.19
SRP54-206ENST00000555317 ARVCFO00192 962 aa13.84□□□□□ -0.19
SRP54-206ENST00000555317 NOP56O00567 594 aaKnown RBP13.84□□□□□ -0.19
SRP54-206ENST00000555317 FIBPO43427 364 aa13.84□□□□□ -0.19
SRP54-206ENST00000555317 SORBS3O60504 671 aa13.84□□□□□ -0.19
SRP54-206ENST00000555317 PFKFB2O60825 505 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms