RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 ENOX1Q8TC92 643 aaKnown RBP6.83□□□□□ -1.32
VIPAS39-204ENST00000553576 ERCC4Q92889 916 aaPredicted RBP6.83□□□□□ -1.32
VIPAS39-204ENST00000553576 RRP36Q96EU6 259 aaKnown RBP6.83□□□□□ -1.32
VIPAS39-204ENST00000553576 GSDMAQ96QA5 445 aa6.83□□□□□ -1.32
VIPAS39-204ENST00000553576 PSMD1Q99460 953 aa6.83□□□□□ -1.32
VIPAS39-204ENST00000553576 CCSER1Q9C0I3 900 aa6.83□□□□□ -1.32
VIPAS39-204ENST00000553576 HSD3B7Q9H2F3 369 aa6.83□□□□□ -1.32
VIPAS39-204ENST00000553576 KCNF1Q9H3M0 494 aa6.83□□□□□ -1.32
VIPAS39-204ENST00000553576 KCND1Q9NSA2 647 aa6.83□□□□□ -1.32
VIPAS39-204ENST00000553576 NYAP2Q9P242 653 aa6.83□□□□□ -1.32
VIPAS39-204ENST00000553576 PI4KBQ9UBF8 816 aa6.83□□□□□ -1.32
VIPAS39-204ENST00000553576 SYNPO2Q9UMS6 1093 aa6.83□□□□□ -1.32
VIPAS39-204ENST00000553576 BRCA1P38398 1863 aaKnown RBP6.83□□□□□ -1.32
VIPAS39-204ENST00000553576 ATRNL1Q5VV63 1379 aa6.82□□□□□ -1.32
VIPAS39-204ENST00000553576 FER1L6Q2WGJ9 1857 aa6.82□□□□□ -1.32
VIPAS39-204ENST00000553576 KRTAP9-6A0A140TA67 174 aa6.82□□□□□ -1.32
VIPAS39-204ENST00000553576 CCDC194A0A1B0GVG4 234 aa6.82□□□□□ -1.32
VIPAS39-204ENST00000553576 USP17L5A8MUK1 530 aa6.82□□□□□ -1.32
VIPAS39-204ENST00000553576 ADAMTS3O15072 1205 aa6.82□□□□□ -1.32
VIPAS39-204ENST00000553576 SMC2O95347 1197 aa6.82□□□□□ -1.32
VIPAS39-204ENST00000553576 MYL1P05976 194 aa6.82□□□□□ -1.32
VIPAS39-204ENST00000553576 AKR1B1P15121 316 aa6.82□□□□□ -1.32
VIPAS39-204ENST00000553576 ATP2B1P20020 1258 aa6.82□□□□□ -1.32
VIPAS39-204ENST00000553576 BMP6P22004 513 aa6.82□□□□□ -1.32
VIPAS39-204ENST00000553576 ERCC5P28715 1186 aaPredicted RBP6.82□□□□□ -1.32
VIPAS39-204ENST00000553576 MMP14P50281 582 aa6.82□□□□□ -1.32
VIPAS39-204ENST00000553576 GSDMDP57764 484 aa6.82□□□□□ -1.32
VIPAS39-204ENST00000553576 MYL5Q02045 173 aa6.82□□□□□ -1.32
VIPAS39-204ENST00000553576 IL17AQ16552 155 aa6.82□□□□□ -1.32
VIPAS39-204ENST00000553576 SLC4A8Q2Y0W8 1093 aa6.82□□□□□ -1.32
VIPAS39-204ENST00000553576 NOM1Q5C9Z4 860 aaKnown RBP6.82□□□□□ -1.32
VIPAS39-204ENST00000553576 SPECC1Q5M775 1068 aa6.82□□□□□ -1.32
VIPAS39-204ENST00000553576 USP17L2Q6R6M4 530 aa6.82□□□□□ -1.32
VIPAS39-204ENST00000553576 USP49Q70CQ1 688 aa6.82□□□□□ -1.32
VIPAS39-204ENST00000553576 CCDC186Q7Z3E2 898 aa6.82□□□□□ -1.32
VIPAS39-204ENST00000553576 TEX2Q8IWB9 1127 aa6.82□□□□□ -1.32
VIPAS39-204ENST00000553576 LRRC8AQ8IWT6 810 aa6.82□□□□□ -1.32
VIPAS39-204ENST00000553576 IQUBQ8NA54 791 aa6.82□□□□□ -1.32
VIPAS39-204ENST00000553576 RNF217Q8TC41 542 aa6.82□□□□□ -1.32
VIPAS39-204ENST00000553576 SMARCE1Q969G3 411 aa6.82□□□□□ -1.32
VIPAS39-204ENST00000553576 PAGE5Q96GU1 130 aa6.82□□□□□ -1.32
VIPAS39-204ENST00000553576 EPSTI1Q96J88 318 aa6.82□□□□□ -1.32
VIPAS39-204ENST00000553576 AK8Q96MA6 479 aa6.82□□□□□ -1.32
VIPAS39-204ENST00000553576 AGBL1Q96MI9 1066 aa6.82□□□□□ -1.32
VIPAS39-204ENST00000553576 ZNF830Q96NB3 372 aaPredicted RBP6.82□□□□□ -1.32
VIPAS39-204ENST00000553576 INSM2Q96T92 566 aaPredicted RBP6.82□□□□□ -1.32
VIPAS39-204ENST00000553576 GLT8D2Q9H1C3 349 aa6.82□□□□□ -1.32
VIPAS39-204ENST00000553576 TTC12Q9H892 705 aaPredicted RBP6.82□□□□□ -1.32
VIPAS39-204ENST00000553576 KANSL2Q9H9L4 492 aa6.82□□□□□ -1.32
VIPAS39-204ENST00000553576 DBNDD1Q9H9R9 158 aa6.82□□□□□ -1.32
VIPAS39-204ENST00000553576 C6orf50Q9HD87 102 aa6.82□□□□□ -1.32
VIPAS39-204ENST00000553576 KCNQ5Q9NR82 932 aa6.82□□□□□ -1.32
VIPAS39-204ENST00000553576 CLIP2Q9UDT6 1046 aa6.82□□□□□ -1.32
VIPAS39-204ENST00000553576 MAN1B1Q9UKM7 699 aa6.82□□□□□ -1.32
VIPAS39-204ENST00000553576 A0A087X0B3 334 aa6.81□□□□□ -1.32
VIPAS39-204ENST00000553576 PNMA6FA0A0J9YX94 578 aa6.81□□□□□ -1.32
VIPAS39-204ENST00000553576 SMCO2A6NFE2 343 aa6.81□□□□□ -1.32
VIPAS39-204ENST00000553576 F8W031 263 aaPredicted RBP6.81□□□□□ -1.32
VIPAS39-204ENST00000553576 FOXN1O15353 648 aa6.81□□□□□ -1.32
VIPAS39-204ENST00000553576 CBFA2T2O43439 604 aa6.81□□□□□ -1.32
VIPAS39-204ENST00000553576 VIL1P09327 827 aaKnown RBP6.81□□□□□ -1.32
VIPAS39-204ENST00000553576 KCNA3P22001 575 aa6.81□□□□□ -1.32
VIPAS39-204ENST00000553576 HOXA7P31268 230 aaPredicted RBP6.81□□□□□ -1.32
VIPAS39-204ENST00000553576 SCNN1DP51172 638 aa6.81□□□□□ -1.32
VIPAS39-204ENST00000553576 ZNF543Q08ER8 600 aa6.81□□□□□ -1.32
VIPAS39-204ENST00000553576 NFIAQ12857 509 aa6.81□□□□□ -1.32
VIPAS39-204ENST00000553576 DPYDQ12882 1025 aa6.81□□□□□ -1.32
VIPAS39-204ENST00000553576 PICALMQ13492 652 aa6.81□□□□□ -1.32
VIPAS39-204ENST00000553576 TTLL12Q14166 644 aaPredicted RBP6.81□□□□□ -1.32
VIPAS39-204ENST00000553576 NONOQ15233 471 aaKnown RBP eCLIP6.81□□□□□ -1.32
VIPAS39-204ENST00000553576 FKBP1CQ5VVH2 108 aa6.81□□□□□ -1.32
VIPAS39-204ENST00000553576 MSL1Q68DK7 614 aa6.81□□□□□ -1.32
VIPAS39-204ENST00000553576 PDXDC2PQ6P474 469 aa6.81□□□□□ -1.32
VIPAS39-204ENST00000553576 DTHD1Q6ZMT9 781 aa6.81□□□□□ -1.32
VIPAS39-204ENST00000553576 BEND7Q8N7W2 519 aaPredicted RBP6.81□□□□□ -1.32
VIPAS39-204ENST00000553576 TTLL6Q8N841 843 aa6.81□□□□□ -1.32
VIPAS39-204ENST00000553576 SPC24Q8NBT2 197 aa6.81□□□□□ -1.32
VIPAS39-204ENST00000553576 MTMR14Q8NCE2 650 aa6.81□□□□□ -1.32
VIPAS39-204ENST00000553576 GMLQ99445 158 aa6.81□□□□□ -1.32
VIPAS39-204ENST00000553576 BEGAINQ9BUH8 593 aa6.81□□□□□ -1.32
VIPAS39-204ENST00000553576 MXD3Q9BW11 206 aa6.81□□□□□ -1.32
VIPAS39-204ENST00000553576 CUEDC2Q9H467 287 aa6.81□□□□□ -1.32
VIPAS39-204ENST00000553576 CUEDC1Q9NWM3 386 aaPredicted RBP6.81□□□□□ -1.32
VIPAS39-204ENST00000553576 SEC63Q9UGP8 760 aaKnown RBP6.81□□□□□ -1.32
VIPAS39-204ENST00000553576 NRBP1Q9UHY1 535 aa6.81□□□□□ -1.32
VIPAS39-204ENST00000553576 SMCHD1A6NHR9 2005 aa6.81□□□□□ -1.32
VIPAS39-204ENST00000553576 A0A087WWV3 80 aa6.8□□□□□ -1.32
VIPAS39-204ENST00000553576 VWA3AA6NCI4 1184 aa6.8□□□□□ -1.32
VIPAS39-204ENST00000553576 DDTLA6NHG4 134 aaPredicted RBP6.8□□□□□ -1.32
VIPAS39-204ENST00000553576 LRRC10BA6NIK2 292 aa6.8□□□□□ -1.32
VIPAS39-204ENST00000553576 YDJCA8MPS7 323 aa6.8□□□□□ -1.32
VIPAS39-204ENST00000553576 BIN1O00499 593 aa6.8□□□□□ -1.32
VIPAS39-204ENST00000553576 GOLGA8HP0CJ92 632 aa6.8□□□□□ -1.32
VIPAS39-204ENST00000553576 ZNF18P17022 549 aa6.8□□□□□ -1.32
VIPAS39-204ENST00000553576 PTGS1P23219 599 aa6.8□□□□□ -1.32
VIPAS39-204ENST00000553576 CHRNA5P30532 468 aa6.8□□□□□ -1.32
VIPAS39-204ENST00000553576 MCM7P33993 719 aa6.8□□□□□ -1.32
VIPAS39-204ENST00000553576 BAG6P46379 1132 aa6.8□□□□□ -1.32
VIPAS39-204ENST00000553576 KCNJ6P48051 423 aa6.8□□□□□ -1.32
VIPAS39-204ENST00000553576 CLK2P49760 499 aaKnown RBP6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms