RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 INF2Q27J81 1249 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 ASTE1Q2TB18 679 aaPredicted RBP5.36□□□□□ -1.55
LIMA1-214ENST00000552783 WLSQ5T9L3 541 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 HGSNATQ68CP4 663 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 MAATS1Q7Z4T9 603 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 STAG2Q8N3U4 1231 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 BAP1Q92560 729 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 PLA2G12BQ9BX93 195 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 MKNK2Q9HBH9 465 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 NLRC4Q9NPP4 1024 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 A1CFQ9NQ94 594 aaKnown RBP5.36□□□□□ -1.55
LIMA1-214ENST00000552783 KBTBD4Q9NVX7 518 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 SLC12A6Q9UHW9 1150 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 KCNG1Q9UIX4 513 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 ODF2LQ9ULJ1 636 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 TIAM2Q8IVF5 1701 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 ALS2Q96Q42 1657 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 TNS3Q68CZ2 1445 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 BCORQ6W2J9 1755 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 USP17L12C9JPN9 530 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 USP17L21D6R901 530 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 PSMA7O14818 248 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 CYP2D6P10635 497 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 PLCG1P19174 1290 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 KLRC1P26715 233 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 HSD17B3P37058 310 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 ITIH3Q06033 890 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 EHHADHQ08426 723 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 PDE4DQ08499 809 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 PPP2R5AQ15172 486 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 TXNRD1Q16881 649 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 ZSCAN29Q8IWY8 852 aaPredicted RBP5.36□□□□□ -1.55
LIMA1-214ENST00000552783 P2RX5Q93086 422 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 TBC1D31Q96DN5 1066 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 PAGR1Q9BTK6 254 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 MAGEC2Q9UBF1 373 aaPredicted RBP5.36□□□□□ -1.55
LIMA1-214ENST00000552783 FLT1P17948 1338 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 UPP2O95045 317 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 SCG2P13521 617 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 PRLRP16471 622 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 MAGEA1P43355 309 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 ARID5AQ03989 594 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 CHRNDQ07001 517 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 ZNF844Q08AG5 666 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 KCNMA1Q12791 1236 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 NEDD9Q14511 834 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 LRRC41Q15345 812 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 ANKRD20A8PQ5CZ79 823 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 YTHDF3Q7Z739 585 aaKnown RBP5.36□□□□□ -1.55
LIMA1-214ENST00000552783 PARP9Q8IXQ6 854 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 GIMAP7Q8NHV1 300 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 CCDC114Q96M63 670 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 UIMC1Q96RL1 719 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 ERGIC2Q96RQ1 377 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 AP1M1Q9BXS5 423 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 TMBIM4Q9HC24 238 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 MCM9Q9NXL9 1143 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 BCCIPQ9P287 314 aaKnown RBP eCLIP5.36□□□□□ -1.55
LIMA1-214ENST00000552783 ZNF219Q9P2Y4 722 aaPredicted RBP5.36□□□□□ -1.55
LIMA1-214ENST00000552783 FBXO3Q9UK99 471 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 ZNF652Q9Y2D9 606 aa5.36□□□□□ -1.55
LIMA1-214ENST00000552783 TRPM3Q9HCF6 1732 aaPredicted RBP5.36□□□□□ -1.55
LIMA1-214ENST00000552783 SLIT2O94813 1529 aa5.35□□□□□ -1.55
LIMA1-214ENST00000552783 ATXN2Q99700 1313 aaKnown RBP5.35□□□□□ -1.55
LIMA1-214ENST00000552783 STRCP1A6NGW2 1772 aa5.35□□□□□ -1.55
LIMA1-214ENST00000552783 F8W031 263 aaPredicted RBP5.35□□□□□ -1.55
LIMA1-214ENST00000552783 LCA5LO95447 670 aa5.35□□□□□ -1.55
LIMA1-214ENST00000552783 TCP1P17987 556 aaKnown RBP5.35□□□□□ -1.55
LIMA1-214ENST00000552783 HNRNPH3P31942 346 aaKnown RBP5.35□□□□□ -1.55
LIMA1-214ENST00000552783 CRKLP46109 303 aaKnown RBP5.35□□□□□ -1.55
LIMA1-214ENST00000552783 CDC37Q16543 378 aaPredicted RBP5.35□□□□□ -1.55
LIMA1-214ENST00000552783 EMC10Q5UCC4 262 aa5.35□□□□□ -1.55
LIMA1-214ENST00000552783 CCDC70Q6NSX1 233 aa5.35□□□□□ -1.55
LIMA1-214ENST00000552783 NBPF5PQ86XG9 351 aaPredicted RBP5.35□□□□□ -1.55
LIMA1-214ENST00000552783 TMTC2Q8N394 836 aa5.35□□□□□ -1.55
LIMA1-214ENST00000552783 INPP4AQ96PE3 977 aaPredicted RBP5.35□□□□□ -1.55
LIMA1-214ENST00000552783 SLC4A9Q96Q91 983 aa5.35□□□□□ -1.55
LIMA1-214ENST00000552783 TRIM9Q9C026 710 aa5.35□□□□□ -1.55
LIMA1-214ENST00000552783 NDST4Q9H3R1 872 aa5.35□□□□□ -1.55
LIMA1-214ENST00000552783 CCDC87Q9NVE4 849 aa5.35□□□□□ -1.55
LIMA1-214ENST00000552783 RMND1Q9NWS8 449 aa5.35□□□□□ -1.55
LIMA1-214ENST00000552783 L3MBTL1Q9Y468 752 aa5.35□□□□□ -1.55
LIMA1-214ENST00000552783 TRAPPC3O43617 180 aa5.35□□□□□ -1.55
LIMA1-214ENST00000552783 CCNE1P24864 410 aa5.35□□□□□ -1.55
LIMA1-214ENST00000552783 TNFRSF8P28908 595 aa5.35□□□□□ -1.55
LIMA1-214ENST00000552783 USP8P40818 1118 aa5.35□□□□□ -1.55
LIMA1-214ENST00000552783 SCTRP47872 440 aa5.35□□□□□ -1.55
LIMA1-214ENST00000552783 TRIM28Q13263 835 aaKnown RBP5.35□□□□□ -1.55
LIMA1-214ENST00000552783 NBPF9Q3BBW0 867 aa5.35□□□□□ -1.55
LIMA1-214ENST00000552783 NAIF1Q69YI7 327 aaPredicted RBP5.35□□□□□ -1.55
LIMA1-214ENST00000552783 IQCEQ6IPM2 695 aa5.35□□□□□ -1.55
LIMA1-214ENST00000552783 TLDC1Q6P9B6 456 aa5.35□□□□□ -1.55
LIMA1-214ENST00000552783 IFT20Q8IY31 132 aa5.35□□□□□ -1.55
LIMA1-214ENST00000552783 FBXO41Q8TF61 875 aa5.35□□□□□ -1.55
LIMA1-214ENST00000552783 RAPGEF5Q92565 580 aa5.35□□□□□ -1.55
LIMA1-214ENST00000552783 SEC16BQ96JE7 1060 aa5.35□□□□□ -1.55
LIMA1-214ENST00000552783 NLRP3Q96P20 1036 aa5.35□□□□□ -1.55
LIMA1-214ENST00000552783 RIOK1Q9BRS2 568 aaKnown RBP5.35□□□□□ -1.55
LIMA1-214ENST00000552783 FGFBP2Q9BYJ0 223 aa5.35□□□□□ -1.55
LIMA1-214ENST00000552783 GGT7Q9UJ14 662 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms