RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 RNF40O75150 1001 aa8.34□□□□□ -1.08
LIMA1-213ENST00000552720 PDHBP11177 359 aa8.34□□□□□ -1.08
LIMA1-213ENST00000552720 TUBB4BP68371 445 aa8.34□□□□□ -1.08
LIMA1-213ENST00000552720 SLC7A5Q01650 507 aa8.34□□□□□ -1.08
LIMA1-213ENST00000552720 HSP90B2PQ58FF3 399 aa8.34□□□□□ -1.08
LIMA1-213ENST00000552720 FKBP15Q5T1M5 1219 aa8.34□□□□□ -1.08
LIMA1-213ENST00000552720 NFRKBQ6P4R8 1299 aa8.34□□□□□ -1.08
LIMA1-213ENST00000552720 ZNF662Q6ZS27 426 aa8.34□□□□□ -1.08
LIMA1-213ENST00000552720 RRAGAQ7L523 313 aa8.34□□□□□ -1.08
LIMA1-213ENST00000552720 TMC4Q7Z404 712 aa8.34□□□□□ -1.08
LIMA1-213ENST00000552720 CREG2Q8IUH2 290 aa8.34□□□□□ -1.08
LIMA1-213ENST00000552720 FAM114A1Q8IWE2 563 aa8.34□□□□□ -1.08
LIMA1-213ENST00000552720 CCDC170Q8IYT3 715 aa8.34□□□□□ -1.08
LIMA1-213ENST00000552720 RETREG2Q8NC44 543 aa8.34□□□□□ -1.08
LIMA1-213ENST00000552720 GOLGA5Q8TBA6 731 aa8.34□□□□□ -1.08
LIMA1-213ENST00000552720 FAM71BQ8TC56 605 aa8.34□□□□□ -1.08
LIMA1-213ENST00000552720 LARP4BQ92615 738 aaKnown RBP8.34□□□□□ -1.08
LIMA1-213ENST00000552720 LZTS2Q9BRK4 669 aa8.34□□□□□ -1.08
LIMA1-213ENST00000552720 IFIH1Q9BYX4 1025 aaKnown RBP8.34□□□□□ -1.08
LIMA1-213ENST00000552720 MAGEF1Q9HAY2 307 aa8.34□□□□□ -1.08
LIMA1-213ENST00000552720 TMEM51Q9NW97 253 aa8.34□□□□□ -1.08
LIMA1-213ENST00000552720 TBC1D7Q9P0N9 293 aa8.34□□□□□ -1.08
LIMA1-213ENST00000552720 DMGDHQ9UI17 866 aaKnown RBP8.34□□□□□ -1.08
LIMA1-213ENST00000552720 PLAGL2Q9UPG8 496 aa8.34□□□□□ -1.08
LIMA1-213ENST00000552720 LEMD3Q9Y2U8 911 aa8.34□□□□□ -1.08
LIMA1-213ENST00000552720 PCDHA13Q9Y5I0 950 aa8.34□□□□□ -1.08
LIMA1-213ENST00000552720 GPR75-ASB3A0A0A6YYF3 556 aa8.33□□□□□ -1.08
LIMA1-213ENST00000552720 A0A0U1RQG5 324 aaPredicted RBP8.33□□□□□ -1.08
LIMA1-213ENST00000552720 PPP1R11O60927 126 aaPredicted RBP8.33□□□□□ -1.08
LIMA1-213ENST00000552720 LDHCP07864 332 aa8.33□□□□□ -1.08
LIMA1-213ENST00000552720 GGCXP38435 758 aa8.33□□□□□ -1.08
LIMA1-213ENST00000552720 TNNI2P48788 182 aa8.33□□□□□ -1.08
LIMA1-213ENST00000552720 AMPD3Q01432 767 aa8.33□□□□□ -1.08
LIMA1-213ENST00000552720 GFPT1Q06210 699 aaPredicted RBP8.33□□□□□ -1.08
LIMA1-213ENST00000552720 SPA17Q15506 151 aa8.33□□□□□ -1.08
LIMA1-213ENST00000552720 MFSD14BQ5SR56 506 aa8.33□□□□□ -1.08
LIMA1-213ENST00000552720 SNX29Q8TEQ0 813 aa8.33□□□□□ -1.08
LIMA1-213ENST00000552720 DDX12PQ92771 950 aa8.33□□□□□ -1.08
LIMA1-213ENST00000552720 LRRC1Q9BTT6 524 aa8.33□□□□□ -1.08
LIMA1-213ENST00000552720 SELENOOQ9BVL4 669 aa8.33□□□□□ -1.08
LIMA1-213ENST00000552720 RIOX1Q9H6W3 641 aa8.33□□□□□ -1.08
LIMA1-213ENST00000552720 SH2D4AQ9H788 454 aa8.33□□□□□ -1.08
LIMA1-213ENST00000552720 SMCHD1A6NHR9 2005 aa8.33□□□□□ -1.08
LIMA1-213ENST00000552720 A0A1W2PQJ5 194 aa8.32□□□□□ -1.08
LIMA1-213ENST00000552720 ANKRD65E5RJM6 399 aa8.32□□□□□ -1.08
LIMA1-213ENST00000552720 F8W031 263 aaPredicted RBP8.32□□□□□ -1.08
LIMA1-213ENST00000552720 AGPSO00116 658 aa8.32□□□□□ -1.08
LIMA1-213ENST00000552720 BUB1O43683 1085 aa8.32□□□□□ -1.08
LIMA1-213ENST00000552720 AKR1B10O60218 316 aa8.32□□□□□ -1.08
LIMA1-213ENST00000552720 PRPF6O94906 941 aaKnown RBP8.32□□□□□ -1.08
LIMA1-213ENST00000552720 AKR1B1P15121 316 aa8.32□□□□□ -1.08
LIMA1-213ENST00000552720 RFC4P35249 363 aa8.32□□□□□ -1.08
LIMA1-213ENST00000552720 SLC16A2P36021 539 aa8.32□□□□□ -1.08
LIMA1-213ENST00000552720 KCNMA1Q12791 1236 aa8.32□□□□□ -1.08
LIMA1-213ENST00000552720 SKIDA1Q1XH10 827 aa8.32□□□□□ -1.08
LIMA1-213ENST00000552720 FIGNQ5HY92 759 aa8.32□□□□□ -1.08
LIMA1-213ENST00000552720 RC3H1Q5TC82 1133 aaKnown RBP8.32□□□□□ -1.08
LIMA1-213ENST00000552720 TTBK2Q6IQ55 1244 aa8.32□□□□□ -1.08
LIMA1-213ENST00000552720 LRRC55Q6ZSA7 311 aa8.32□□□□□ -1.08
LIMA1-213ENST00000552720 UNC13DQ70J99 1090 aa8.32□□□□□ -1.08
LIMA1-213ENST00000552720 MSL3Q8N5Y2 521 aaKnown RBP8.32□□□□□ -1.08
LIMA1-213ENST00000552720 CNBD1Q8NA66 436 aa8.32□□□□□ -1.08
LIMA1-213ENST00000552720 EHBP1Q8NDI1 1231 aa8.32□□□□□ -1.08
LIMA1-213ENST00000552720 CDK5RAP3Q96JB5 506 aa8.32□□□□□ -1.08
LIMA1-213ENST00000552720 C8orf37Q96NL8 207 aa8.32□□□□□ -1.08
LIMA1-213ENST00000552720 DEF6Q9H4E7 631 aa8.32□□□□□ -1.08
LIMA1-213ENST00000552720 NLRC4Q9NPP4 1024 aa8.32□□□□□ -1.08
LIMA1-213ENST00000552720 SNX12Q9UMY4 172 aa8.32□□□□□ -1.08
LIMA1-213ENST00000552720 ANO9A1A5B4 782 aa8.32□□□□□ -1.08
LIMA1-213ENST00000552720 DNA2P51530 1060 aa8.32□□□□□ -1.08
LIMA1-213ENST00000552720 CKAP4Q07065 602 aaKnown RBP8.32□□□□□ -1.08
LIMA1-213ENST00000552720 MAN2A1Q16706 1144 aa8.32□□□□□ -1.08
LIMA1-213ENST00000552720 CCNI2Q6ZMN8 369 aaPredicted RBP8.32□□□□□ -1.08
LIMA1-213ENST00000552720 BAP1Q92560 729 aa8.32□□□□□ -1.08
LIMA1-213ENST00000552720 RAD54LQ92698 747 aa8.32□□□□□ -1.08
LIMA1-213ENST00000552720 MTMR8Q96EF0 704 aa8.32□□□□□ -1.08
LIMA1-213ENST00000552720 CRACR2AQ9BSW2 395 aa8.32□□□□□ -1.08
LIMA1-213ENST00000552720 TANGO6Q9C0B7 1094 aa8.32□□□□□ -1.08
LIMA1-213ENST00000552720 FEZ2Q9UHY8 353 aaPredicted RBP8.32□□□□□ -1.08
LIMA1-213ENST00000552720 NPHP3-ACAD11A0A0J9YXS1 232 aa8.31□□□□□ -1.08
LIMA1-213ENST00000552720 SSBP05455 408 aaKnown RBP eCLIP8.31□□□□□ -1.08
LIMA1-213ENST00000552720 HNRNPH3P31942 346 aaKnown RBP8.31□□□□□ -1.08
LIMA1-213ENST00000552720 SLC1A4P43007 532 aa8.31□□□□□ -1.08
LIMA1-213ENST00000552720 FXR2P51116 673 aaKnown RBP eCLIP8.31□□□□□ -1.08
LIMA1-213ENST00000552720 ADCY7P51828 1080 aa8.31□□□□□ -1.08
LIMA1-213ENST00000552720 CDK17Q00537 523 aa8.31□□□□□ -1.08
LIMA1-213ENST00000552720 RASSF7Q02833 373 aa8.31□□□□□ -1.08
LIMA1-213ENST00000552720 KCTD19Q17RG1 926 aaPredicted RBP8.31□□□□□ -1.08
LIMA1-213ENST00000552720 PRR5LQ6MZQ0 368 aa8.31□□□□□ -1.08
LIMA1-213ENST00000552720 LRRC31Q6UY01 552 aa8.31□□□□□ -1.08
LIMA1-213ENST00000552720 DPP8Q6V1X1 898 aaPredicted RBP8.31□□□□□ -1.08
LIMA1-213ENST00000552720 LEKR1Q6ZMV7 388 aa8.31□□□□□ -1.08
LIMA1-213ENST00000552720 FAM196AQ6ZSG2 479 aa8.31□□□□□ -1.08
LIMA1-213ENST00000552720 C10orf67Q8IYJ2 551 aa8.31□□□□□ -1.08
LIMA1-213ENST00000552720 MS4A14Q96JA4 679 aa8.31□□□□□ -1.08
LIMA1-213ENST00000552720 MXD3Q9BW11 206 aa8.31□□□□□ -1.08
LIMA1-213ENST00000552720 MED4Q9NPJ6 270 aa8.31□□□□□ -1.08
LIMA1-213ENST00000552720 MTMR4Q9NYA4 1195 aa8.31□□□□□ -1.08
LIMA1-213ENST00000552720 POLLQ9UGP5 575 aa8.31□□□□□ -1.08
LIMA1-213ENST00000552720 LY75O60449 1722 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms