RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 TPD52L2O43399 206 aaKnown RBP8.18□□□□□ -1.1
LIMA1-210ENST00000552045 FKTNO75072 461 aa8.18□□□□□ -1.1
LIMA1-210ENST00000552045 TBC1D8O95759 1140 aa8.18□□□□□ -1.1
LIMA1-210ENST00000552045 ATF3P18847 181 aa8.18□□□□□ -1.1
LIMA1-210ENST00000552045 ERVK-21P61565 698 aa8.18□□□□□ -1.1
LIMA1-210ENST00000552045 LSAMPQ13449 338 aa8.18□□□□□ -1.1
LIMA1-210ENST00000552045 ARHGAP44Q17R89 818 aa8.18□□□□□ -1.1
LIMA1-210ENST00000552045 THAP5Q7Z6K1 395 aa8.18□□□□□ -1.1
LIMA1-210ENST00000552045 SPACA3Q8IXA5 215 aa8.18□□□□□ -1.1
LIMA1-210ENST00000552045 C2orf69Q8N8R5 385 aa8.18□□□□□ -1.1
LIMA1-210ENST00000552045 PANK1Q8TE04 598 aa8.18□□□□□ -1.1
LIMA1-210ENST00000552045 HSPA12BQ96MM6 686 aa8.18□□□□□ -1.1
LIMA1-210ENST00000552045 PSMD1Q99460 953 aa8.18□□□□□ -1.1
LIMA1-210ENST00000552045 CDIP1Q9H305 208 aa8.18□□□□□ -1.1
LIMA1-210ENST00000552045 VTA1Q9NP79 307 aa8.18□□□□□ -1.1
LIMA1-210ENST00000552045 DUSP13Q9UII6 198 aa8.18□□□□□ -1.1
LIMA1-210ENST00000552045 FBXL7Q9UJT9 491 aa8.18□□□□□ -1.1
LIMA1-210ENST00000552045 ZNF180Q9UJW8 692 aa8.18□□□□□ -1.1
LIMA1-210ENST00000552045 CBLCQ9ULV8 474 aa8.18□□□□□ -1.1
LIMA1-210ENST00000552045 RIPOR2Q9Y4F9 1068 aa8.18□□□□□ -1.1
LIMA1-210ENST00000552045 TIMM13Q9Y5L4 95 aaPredicted RBP8.18□□□□□ -1.1
LIMA1-210ENST00000552045 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP8.17□□□□□ -1.1
LIMA1-210ENST00000552045 PLEKHD1A6NEE1 506 aa8.17□□□□□ -1.1
LIMA1-210ENST00000552045 ABLIM3O94929 683 aa8.17□□□□□ -1.1
LIMA1-210ENST00000552045 F13BP05160 661 aa8.17□□□□□ -1.1
LIMA1-210ENST00000552045 YBX3P16989 372 aaKnown RBP eCLIP8.17□□□□□ -1.1
LIMA1-210ENST00000552045 CHRNA4P43681 627 aa8.17□□□□□ -1.1
LIMA1-210ENST00000552045 LAPTM5Q13571 262 aa8.17□□□□□ -1.1
LIMA1-210ENST00000552045 PTPN21Q16825 1174 aa8.17□□□□□ -1.1
LIMA1-210ENST00000552045 ABCB5Q2M3G0 1257 aa8.17□□□□□ -1.1
LIMA1-210ENST00000552045 INAVAQ3KP66 663 aa8.17□□□□□ -1.1
LIMA1-210ENST00000552045 CREB3L3Q68CJ9 461 aa8.17□□□□□ -1.1
LIMA1-210ENST00000552045 NXNQ6DKJ4 435 aa8.17□□□□□ -1.1
LIMA1-210ENST00000552045 CYP2R1Q6VVX0 501 aa8.17□□□□□ -1.1
LIMA1-210ENST00000552045 HDGFL2Q7Z4V5 671 aaPredicted RBP8.17□□□□□ -1.1
LIMA1-210ENST00000552045 CD163Q86VB7 1156 aa8.17□□□□□ -1.1
LIMA1-210ENST00000552045 TCEAL8Q8IYN2 117 aa8.17□□□□□ -1.1
LIMA1-210ENST00000552045 CISD2Q8N5K1 135 aaKnown RBP8.17□□□□□ -1.1
LIMA1-210ENST00000552045 FAM181AQ8N9Y4 354 aa8.17□□□□□ -1.1
LIMA1-210ENST00000552045 TTC8Q8TAM2 541 aa8.17□□□□□ -1.1
LIMA1-210ENST00000552045 UBE2FQ969M7 185 aa8.17□□□□□ -1.1
LIMA1-210ENST00000552045 CHAMP1Q96JM3 812 aa8.17□□□□□ -1.1
LIMA1-210ENST00000552045 CATSPERZQ9NTU4 200 aa8.17□□□□□ -1.1
LIMA1-210ENST00000552045 OXSMQ9NWU1 459 aa8.17□□□□□ -1.1
LIMA1-210ENST00000552045 TMEM82A0PJX8 343 aa8.16□□□□□ -1.1
LIMA1-210ENST00000552045 C7orf72A4D263 438 aa8.16□□□□□ -1.1
LIMA1-210ENST00000552045 C1QTNF9BB2RNN3 333 aa8.16□□□□□ -1.1
LIMA1-210ENST00000552045 CAND2O75155 1236 aa8.16□□□□□ -1.1
LIMA1-210ENST00000552045 RFPL1O75677 317 aa8.16□□□□□ -1.1
LIMA1-210ENST00000552045 LTKP29376 864 aa8.16□□□□□ -1.1
LIMA1-210ENST00000552045 BCL6P41182 706 aa8.16□□□□□ -1.1
LIMA1-210ENST00000552045 CLCN7P51798 805 aa8.16□□□□□ -1.1
LIMA1-210ENST00000552045 GTF2A2P52657 109 aa8.16□□□□□ -1.1
LIMA1-210ENST00000552045 SESN3P58005 492 aa8.16□□□□□ -1.1
LIMA1-210ENST00000552045 RPL11P62913 178 aaKnown RBP8.16□□□□□ -1.1
LIMA1-210ENST00000552045 LACTBP83111 547 aaPredicted RBP8.16□□□□□ -1.1
LIMA1-210ENST00000552045 CRY1Q16526 586 aa8.16□□□□□ -1.1
LIMA1-210ENST00000552045 MAP9Q49MG5 647 aa8.16□□□□□ -1.1
LIMA1-210ENST00000552045 FAM102BQ5T8I3 360 aa8.16□□□□□ -1.1
LIMA1-210ENST00000552045 RNF43Q68DV7 783 aa8.16□□□□□ -1.1
LIMA1-210ENST00000552045 OTOP1Q7RTM1 612 aa8.16□□□□□ -1.1
LIMA1-210ENST00000552045 NAT16Q8N8M0 369 aa8.16□□□□□ -1.1
LIMA1-210ENST00000552045 SLC5A5Q92911 643 aa8.16□□□□□ -1.1
LIMA1-210ENST00000552045 AHCYL2Q96HN2 611 aaKnown RBP8.16□□□□□ -1.1
LIMA1-210ENST00000552045 KCNJ15Q99712 375 aa8.16□□□□□ -1.1
LIMA1-210ENST00000552045 RHOBTB2Q9BYZ6 727 aa8.16□□□□□ -1.1
LIMA1-210ENST00000552045 H2AFY2Q9P0M6 372 aaPredicted RBP8.16□□□□□ -1.1
LIMA1-210ENST00000552045 PCDHA11Q9Y5I1 949 aa8.16□□□□□ -1.1
LIMA1-210ENST00000552045 CEACAM5P06731 702 aa8.15□□□□□ -1.1
LIMA1-210ENST00000552045 MYBL2P10244 700 aa8.15□□□□□ -1.1
LIMA1-210ENST00000552045 ZSCAN20P17040 1043 aaPredicted RBP8.15□□□□□ -1.1
LIMA1-210ENST00000552045 IARSP41252 1262 aaKnown RBP8.15□□□□□ -1.1
LIMA1-210ENST00000552045 PLA2G4EQ3MJ16 856 aa8.15□□□□□ -1.1
LIMA1-210ENST00000552045 ZPBP2Q6X784 338 aa8.15□□□□□ -1.1
LIMA1-210ENST00000552045 EFHBQ8N7U6 833 aa8.15□□□□□ -1.1
LIMA1-210ENST00000552045 CLRN3Q8NCR9 226 aa8.15□□□□□ -1.1
LIMA1-210ENST00000552045 JPH3Q8WXH2 748 aaPredicted RBP8.15□□□□□ -1.1
LIMA1-210ENST00000552045 PMM1Q92871 262 aa8.15□□□□□ -1.1
LIMA1-210ENST00000552045 FUBP3Q96I24 572 aaKnown RBP eCLIP8.15□□□□□ -1.1
LIMA1-210ENST00000552045 SCYL1Q96KG9 808 aa8.15□□□□□ -1.1
LIMA1-210ENST00000552045 SLC13A1Q9BZW2 595 aa8.15□□□□□ -1.1
LIMA1-210ENST00000552045 LUC7LQ9NQ29 371 aaKnown RBP8.15□□□□□ -1.1
LIMA1-210ENST00000552045 SEMA3GQ9NS98 782 aa8.15□□□□□ -1.1
LIMA1-210ENST00000552045 CLDND1Q9NY35 253 aa8.15□□□□□ -1.1
LIMA1-210ENST00000552045 NOB1Q9ULX3 412 aaKnown RBP8.15□□□□□ -1.1
LIMA1-210ENST00000552045 PLAGL2Q9UPG8 496 aa8.15□□□□□ -1.1
LIMA1-210ENST00000552045 ZNF561-AS1K7EIQ3 104 aa8.14□□□□□ -1.11
LIMA1-210ENST00000552045 PDE6AP16499 860 aa8.14□□□□□ -1.11
LIMA1-210ENST00000552045 GRIK1P39086 918 aa8.14□□□□□ -1.11
LIMA1-210ENST00000552045 KLF1Q13351 362 aaPredicted RBP8.14□□□□□ -1.11
LIMA1-210ENST00000552045 HLTFQ14527 1009 aaKnown RBP eCLIP8.14□□□□□ -1.11
LIMA1-210ENST00000552045 MLC1Q15049 377 aa8.14□□□□□ -1.11
LIMA1-210ENST00000552045 DDB1Q16531 1140 aa8.14□□□□□ -1.11
LIMA1-210ENST00000552045 RGL3Q3MIN7 710 aa8.14□□□□□ -1.11
LIMA1-210ENST00000552045 PRR23CQ6ZRP0 262 aa8.14□□□□□ -1.11
LIMA1-210ENST00000552045 TMPRSS7Q7RTY8 843 aa8.14□□□□□ -1.11
LIMA1-210ENST00000552045 MAGEB6Q8N7X4 407 aa8.14□□□□□ -1.11
LIMA1-210ENST00000552045 TMEM52Q8NDY8 209 aa8.14□□□□□ -1.11
LIMA1-210ENST00000552045 DPF3Q92784 378 aa8.14□□□□□ -1.11
LIMA1-210ENST00000552045 TP53INP1Q96A56 240 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms