RNA–Protein interactions for RNA: ENST00000550280.1

SMARCD1-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 2

Gene SMARCD1, Length 567 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-208ENST00000550280 BFSP2Q13515 415 aa13.55□□□□□ -0.24
SMARCD1-208ENST00000550280 CHST3Q7LGC8 479 aa13.55□□□□□ -0.24
SMARCD1-208ENST00000550280 STAG2Q8N3U4 1231 aa13.55□□□□□ -0.24
SMARCD1-208ENST00000550280 RETREG2Q8NC44 543 aa13.55□□□□□ -0.24
SMARCD1-208ENST00000550280 ESR2Q92731 530 aa13.55□□□□□ -0.24
SMARCD1-208ENST00000550280 FTOQ9C0B1 505 aaKnown RBP eCLIP13.55□□□□□ -0.24
SMARCD1-208ENST00000550280 ZSWIM5Q9P217 1185 aa13.55□□□□□ -0.24
SMARCD1-208ENST00000550280 HDAC6Q9UBN7 1215 aa13.55□□□□□ -0.24
SMARCD1-208ENST00000550280 DDX41Q9UJV9 622 aaKnown RBP13.55□□□□□ -0.24
SMARCD1-208ENST00000550280 COL4A4P53420 1690 aaPredicted RBP13.55□□□□□ -0.24
SMARCD1-208ENST00000550280 NCOR1O75376 2440 aa13.55□□□□□ -0.24
SMARCD1-208ENST00000550280 ABCB11O95342 1321 aa13.55□□□□□ -0.24
SMARCD1-208ENST00000550280 LAMA4Q16363 1823 aa13.55□□□□□ -0.24
SMARCD1-208ENST00000550280 TCF20Q9UGU0 1960 aaKnown RBP13.54□□□□□ -0.24
SMARCD1-208ENST00000550280 HAS3O00219 553 aa13.54□□□□□ -0.24
SMARCD1-208ENST00000550280 BAIAP3O94812 1187 aa13.54□□□□□ -0.24
SMARCD1-208ENST00000550280 IGHDP01880 384 aa13.54□□□□□ -0.24
SMARCD1-208ENST00000550280 EIF2AK2P19525 551 aaKnown RBP13.54□□□□□ -0.24
SMARCD1-208ENST00000550280 ZNF200P98182 395 aaPredicted RBP13.54□□□□□ -0.24
SMARCD1-208ENST00000550280 GHRHRQ02643 423 aa13.54□□□□□ -0.24
SMARCD1-208ENST00000550280 MKRN4PQ13434 485 aaPredicted RBP13.54□□□□□ -0.24
SMARCD1-208ENST00000550280 BRDTQ58F21 947 aaPredicted RBP13.54□□□□□ -0.24
SMARCD1-208ENST00000550280 CAGE1Q8TC20 777 aa13.54□□□□□ -0.24
SMARCD1-208ENST00000550280 NSUN6Q8TEA1 469 aaKnown RBP13.54□□□□□ -0.24
SMARCD1-208ENST00000550280 AFAP1L1Q8TED9 768 aa13.54□□□□□ -0.24
SMARCD1-208ENST00000550280 KHSRPQ92945 711 aaKnown RBP eCLIP13.54□□□□□ -0.24
SMARCD1-208ENST00000550280 RMDN3Q96TC7 470 aa13.54□□□□□ -0.24
SMARCD1-208ENST00000550280 RNF41Q9H4P4 317 aaPredicted RBP13.54□□□□□ -0.24
SMARCD1-208ENST00000550280 GTF2IRD1Q9UHL9 959 aa13.54□□□□□ -0.24
SMARCD1-208ENST00000550280 ZNF213O14771 459 aa13.53□□□□□ -0.24
SMARCD1-208ENST00000550280 TLL1O43897 1013 aa13.53□□□□□ -0.24
SMARCD1-208ENST00000550280 F2P00734 622 aa13.53□□□□□ -0.24
SMARCD1-208ENST00000550280 ZNF286BP0CG31 522 aa13.53□□□□□ -0.24
SMARCD1-208ENST00000550280 CKBP12277 381 aa13.53□□□□□ -0.24
SMARCD1-208ENST00000550280 HOXD8P13378 290 aaPredicted RBP13.53□□□□□ -0.24
SMARCD1-208ENST00000550280 SELPP16109 830 aa13.53□□□□□ -0.24
SMARCD1-208ENST00000550280 HSD17B4P51659 736 aa13.53□□□□□ -0.24
SMARCD1-208ENST00000550280 SKIV2LQ15477 1246 aaKnown RBP13.53□□□□□ -0.24
SMARCD1-208ENST00000550280 CWC27Q6UX04 472 aaKnown RBP13.53□□□□□ -0.24
SMARCD1-208ENST00000550280 LRRC8DQ7L1W4 858 aa13.53□□□□□ -0.24
SMARCD1-208ENST00000550280 IL31RAQ8NI17 732 aa13.53□□□□□ -0.24
SMARCD1-208ENST00000550280 GDPD5Q8WTR4 605 aa13.53□□□□□ -0.24
SMARCD1-208ENST00000550280 EMID1Q96A84 441 aaPredicted RBP13.53□□□□□ -0.24
SMARCD1-208ENST00000550280 MTMR8Q96EF0 704 aa13.53□□□□□ -0.24
SMARCD1-208ENST00000550280 ZSCAN10Q96SZ4 725 aaPredicted RBP13.53□□□□□ -0.24
SMARCD1-208ENST00000550280 OSBPL7Q9BZF2 842 aa13.53□□□□□ -0.24
SMARCD1-208ENST00000550280 OSBPL3Q9H4L5 887 aa13.53□□□□□ -0.24
SMARCD1-208ENST00000550280 PXMP2Q9NR77 195 aa13.53□□□□□ -0.24
SMARCD1-208ENST00000550280 NR3C2P08235 984 aa13.52□□□□□ -0.25
SMARCD1-208ENST00000550280 PSEN2P49810 448 aa13.52□□□□□ -0.25
SMARCD1-208ENST00000550280 SEC23AQ15436 765 aa13.52□□□□□ -0.25
SMARCD1-208ENST00000550280 STXBP2Q15833 593 aa13.52□□□□□ -0.25
SMARCD1-208ENST00000550280 ASPRV1Q53RT3 343 aa13.52□□□□□ -0.25
SMARCD1-208ENST00000550280 B4GALNT3Q6L9W6 998 aa13.52□□□□□ -0.25
SMARCD1-208ENST00000550280 FBXO11Q86XK2 927 aa13.52□□□□□ -0.25
SMARCD1-208ENST00000550280 GPKOWQ92917 476 aaPredicted RBP eCLIP13.52□□□□□ -0.25
SMARCD1-208ENST00000550280 IWS1Q96ST2 819 aa13.52□□□□□ -0.25
SMARCD1-208ENST00000550280 MPHOSPH6Q99547 160 aaKnown RBP13.52□□□□□ -0.25
SMARCD1-208ENST00000550280 ALG1Q9BT22 464 aa13.52□□□□□ -0.25
SMARCD1-208ENST00000550280 MAF1Q9H063 256 aa13.52□□□□□ -0.25
SMARCD1-208ENST00000550280 EPHX3Q9H6B9 360 aa13.52□□□□□ -0.25
SMARCD1-208ENST00000550280 BCAS3Q9H6U6 928 aa13.52□□□□□ -0.25
SMARCD1-208ENST00000550280 KAT14Q9H8E8 782 aa13.52□□□□□ -0.25
SMARCD1-208ENST00000550280 VAT1LQ9HCJ6 419 aa13.52□□□□□ -0.25
SMARCD1-208ENST00000550280 ZBTB47Q9UFB7 747 aaPredicted RBP13.52□□□□□ -0.25
SMARCD1-208ENST00000550280 NOD1Q9Y239 953 aa13.52□□□□□ -0.25
SMARCD1-208ENST00000550280 TRIP12Q14669 1992 aaPredicted RBP13.52□□□□□ -0.25
SMARCD1-208ENST00000550280 KIAA1217Q5T5P2 1943 aa13.51□□□□□ -0.25
SMARCD1-208ENST00000550280 GTPBP6O43824 516 aaPredicted RBP13.51□□□□□ -0.25
SMARCD1-208ENST00000550280 SORBS3O60504 671 aa13.51□□□□□ -0.25
SMARCD1-208ENST00000550280 CASTP20810 708 aaKnown RBP13.51□□□□□ -0.25
SMARCD1-208ENST00000550280 SP2Q02086 613 aa13.51□□□□□ -0.25
SMARCD1-208ENST00000550280 NUCB1Q02818 461 aa13.51□□□□□ -0.25
SMARCD1-208ENST00000550280 MFSD10Q14728 455 aa13.51□□□□□ -0.25
SMARCD1-208ENST00000550280 DGKDQ16760 1214 aa13.51□□□□□ -0.25
SMARCD1-208ENST00000550280 KIAA0753Q2KHM9 967 aa13.51□□□□□ -0.25
SMARCD1-208ENST00000550280 HSDL1Q3SXM5 330 aa13.51□□□□□ -0.25
SMARCD1-208ENST00000550280 ZNF618Q5T7W0 954 aa13.51□□□□□ -0.25
SMARCD1-208ENST00000550280 CNKSR3Q6P9H4 555 aa13.51□□□□□ -0.25
SMARCD1-208ENST00000550280 CYB5R4Q7L1T6 521 aa13.51□□□□□ -0.25
SMARCD1-208ENST00000550280 CHD1LQ86WJ1 897 aa13.51□□□□□ -0.25
SMARCD1-208ENST00000550280 IQCA1Q86XH1 822 aa13.51□□□□□ -0.25
SMARCD1-208ENST00000550280 PPTC7Q8NI37 304 aa13.51□□□□□ -0.25
SMARCD1-208ENST00000550280 ZFP91Q96JP5 570 aaPredicted RBP13.51□□□□□ -0.25
SMARCD1-208ENST00000550280 PDCD2LQ9BRP1 358 aa13.51□□□□□ -0.25
SMARCD1-208ENST00000550280 DSCC1Q9BVC3 393 aa13.51□□□□□ -0.25
SMARCD1-208ENST00000550280 SUGCTQ9HAC7 445 aa13.51□□□□□ -0.25
SMARCD1-208ENST00000550280 CD320Q9NPF0 282 aa13.51□□□□□ -0.25
SMARCD1-208ENST00000550280 MAD2L2Q9UI95 211 aa13.51□□□□□ -0.25
SMARCD1-208ENST00000550280 MRPL11Q9Y3B7 192 aaKnown RBP13.51□□□□□ -0.25
SMARCD1-208ENST00000550280 LINC01553A4QN01 128 aa13.5□□□□□ -0.25
SMARCD1-208ENST00000550280 B4DLN1 442 aa13.5□□□□□ -0.25
SMARCD1-208ENST00000550280 EIF3JO75822 258 aaKnown RBP13.5□□□□□ -0.25
SMARCD1-208ENST00000550280 GJB5O95377 273 aa13.5□□□□□ -0.25
SMARCD1-208ENST00000550280 CFBP00751 764 aa13.5□□□□□ -0.25
SMARCD1-208ENST00000550280 PARP1P09874 1014 aaKnown RBP13.5□□□□□ -0.25
SMARCD1-208ENST00000550280 MRPL12P52815 198 aaKnown RBP13.5□□□□□ -0.25
SMARCD1-208ENST00000550280 PTK7Q13308 1070 aa13.5□□□□□ -0.25
SMARCD1-208ENST00000550280 ARHGEF16Q5VV41 709 aa13.5□□□□□ -0.25
SMARCD1-208ENST00000550280 MYSM1Q5VVJ2 828 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms