RNA–Protein interactions for RNA: ENST00000548650.1

CHMP1A-205, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-205ENST00000548650 PCDHA1Q9Y5I3 950 aa20.22■□□□□ 0.83
CHMP1A-205ENST00000548650 PITPNM1O00562 1244 aa20.21■□□□□ 0.83
CHMP1A-205ENST00000548650 CYTH3O43739 400 aa20.21■□□□□ 0.83
CHMP1A-205ENST00000548650 HOMER1Q86YM7 354 aa20.21■□□□□ 0.83
CHMP1A-205ENST00000548650 MB21D2Q8IYB1 491 aaPredicted RBP20.21■□□□□ 0.83
CHMP1A-205ENST00000548650 RPUSD2Q8IZ73 545 aaKnown RBP20.21■□□□□ 0.83
CHMP1A-205ENST00000548650 NCOA7Q8NI08 942 aa20.21■□□□□ 0.83
CHMP1A-205ENST00000548650 KAT2BQ92831 832 aa20.21■□□□□ 0.83
CHMP1A-205ENST00000548650 EMID1Q96A84 441 aaPredicted RBP20.21■□□□□ 0.83
CHMP1A-205ENST00000548650 CTAGE1Q96RT6 745 aa20.21■□□□□ 0.83
CHMP1A-205ENST00000548650 PIGSQ96S52 555 aa20.21■□□□□ 0.83
CHMP1A-205ENST00000548650 PDCD2LQ9BRP1 358 aa20.21■□□□□ 0.83
CHMP1A-205ENST00000548650 DDX41Q9UJV9 622 aaKnown RBP20.21■□□□□ 0.83
CHMP1A-205ENST00000548650 YBX2Q9Y2T7 364 aaKnown RBP20.21■□□□□ 0.83
CHMP1A-205ENST00000548650 VCANP13611 3396 aa20.21■□□□□ 0.83
CHMP1A-205ENST00000548650 CHD7Q9P2D1 2997 aa20.21■□□□□ 0.83
CHMP1A-205ENST00000548650 ERICH2A1L162 156 aa20.2■□□□□ 0.82
CHMP1A-205ENST00000548650 EIF3JO75822 258 aaKnown RBP20.2■□□□□ 0.82
CHMP1A-205ENST00000548650 RGS20O76081 388 aa20.2■□□□□ 0.82
CHMP1A-205ENST00000548650 HOXA13P31271 388 aaPredicted RBP20.2■□□□□ 0.82
CHMP1A-205ENST00000548650 WTAPQ15007 396 aa20.2■□□□□ 0.82
CHMP1A-205ENST00000548650 CHST3Q7LGC8 479 aa20.2■□□□□ 0.82
CHMP1A-205ENST00000548650 SESTD1Q86VW0 696 aa20.2■□□□□ 0.82
CHMP1A-205ENST00000548650 USP38Q8NB14 1042 aa20.2■□□□□ 0.82
CHMP1A-205ENST00000548650 IL31RAQ8NI17 732 aa20.2■□□□□ 0.82
CHMP1A-205ENST00000548650 MAP4K1Q92918 833 aa20.2■□□□□ 0.82
CHMP1A-205ENST00000548650 NKX2-4Q9H2Z4 354 aa20.2■□□□□ 0.82
CHMP1A-205ENST00000548650 MAP3K20Q9NYL2 800 aaKnown RBP20.2■□□□□ 0.82
CHMP1A-205ENST00000548650 MSRAQ9UJ68 235 aa20.2■□□□□ 0.82
CHMP1A-205ENST00000548650 MRVI1Q9Y6F6 885 aa20.2■□□□□ 0.82
CHMP1A-205ENST00000548650 RFC2P35250 354 aa20.19■□□□□ 0.82
CHMP1A-205ENST00000548650 SART3Q15020 963 aaKnown RBP20.19■□□□□ 0.82
CHMP1A-205ENST00000548650 DEFB128Q7Z7B8 93 aa20.19■□□□□ 0.82
CHMP1A-205ENST00000548650 PRDM12Q9H4Q4 367 aa20.19■□□□□ 0.82
CHMP1A-205ENST00000548650 RBM8AQ9Y5S9 174 aaKnown RBP20.19■□□□□ 0.82
CHMP1A-205ENST00000548650 SLC4A7Q9Y6M7 1214 aa20.19■□□□□ 0.82
CHMP1A-205ENST00000548650 DOCK5Q9H7D0 1870 aa20.18■□□□□ 0.82
CHMP1A-205ENST00000548650 ZBBXA8MT70 800 aa20.18■□□□□ 0.82
CHMP1A-205ENST00000548650 IQCF3P0C7M6 154 aa20.18■□□□□ 0.82
CHMP1A-205ENST00000548650 RABGGTBP53611 331 aa20.18■□□□□ 0.82
CHMP1A-205ENST00000548650 CHMP4BP1P59074 171 aa20.18■□□□□ 0.82
CHMP1A-205ENST00000548650 PGM5Q15124 567 aa20.18■□□□□ 0.82
CHMP1A-205ENST00000548650 TMEM67Q5HYA8 995 aa20.18■□□□□ 0.82
CHMP1A-205ENST00000548650 GDF6Q6KF10 455 aaPredicted RBP20.18■□□□□ 0.82
CHMP1A-205ENST00000548650 SAMD3Q8N6K7 520 aa20.18■□□□□ 0.82
CHMP1A-205ENST00000548650 PPTC7Q8NI37 304 aa20.18■□□□□ 0.82
CHMP1A-205ENST00000548650 NOD1Q9Y239 953 aa20.18■□□□□ 0.82
CHMP1A-205ENST00000548650 TTC28Q96AY4 2481 aa20.18■□□□□ 0.82
CHMP1A-205ENST00000548650 SPTBN5Q9NRC6 3674 aaKnown RBP20.17■□□□□ 0.82
CHMP1A-205ENST00000548650 F2P00734 622 aa20.17■□□□□ 0.82
CHMP1A-205ENST00000548650 ZNF286BP0CG31 522 aa20.17■□□□□ 0.82
CHMP1A-205ENST00000548650 HOXD8P13378 290 aaPredicted RBP20.17■□□□□ 0.82
CHMP1A-205ENST00000548650 CASTP20810 708 aaKnown RBP20.17■□□□□ 0.82
CHMP1A-205ENST00000548650 PTGISQ16647 500 aa20.17■□□□□ 0.82
CHMP1A-205ENST00000548650 DGKDQ16760 1214 aa20.17■□□□□ 0.82
CHMP1A-205ENST00000548650 IGDCC4Q8TDY8 1250 aa20.17■□□□□ 0.82
CHMP1A-205ENST00000548650 GAS2L1Q99501 681 aaPredicted RBP20.17■□□□□ 0.82
CHMP1A-205ENST00000548650 FRMPD4Q14CM0 1322 aa20.17■□□□□ 0.82
CHMP1A-205ENST00000548650 PNMA6FA0A0J9YX94 578 aa20.16■□□□□ 0.82
CHMP1A-205ENST00000548650 GCOM1H8Y6P7 765 aaPredicted RBP20.16■□□□□ 0.82
CHMP1A-205ENST00000548650 POLR2MP0CAP2 368 aa20.16■□□□□ 0.82
CHMP1A-205ENST00000548650 MYCLP12524 364 aaPredicted RBP20.16■□□□□ 0.82
CHMP1A-205ENST00000548650 ATP2A2P16615 1042 aaKnown RBP20.16■□□□□ 0.82
CHMP1A-205ENST00000548650 TRAF1Q13077 416 aa20.16■□□□□ 0.82
CHMP1A-205ENST00000548650 BFSP2Q13515 415 aa20.16■□□□□ 0.82
CHMP1A-205ENST00000548650 LAMC2Q13753 1193 aa20.16■□□□□ 0.82
CHMP1A-205ENST00000548650 ADGRE1Q14246 886 aa20.16■□□□□ 0.82
CHMP1A-205ENST00000548650 CATIPQ7Z7H3 387 aa20.16■□□□□ 0.82
CHMP1A-205ENST00000548650 VSIG10LQ86VR7 867 aa20.16■□□□□ 0.82
CHMP1A-205ENST00000548650 CAGE1Q8TC20 777 aa20.16■□□□□ 0.82
CHMP1A-205ENST00000548650 DHX38Q92620 1227 aaKnown RBP20.16■□□□□ 0.82
CHMP1A-205ENST00000548650 SLC28A3Q9HAS3 691 aa20.16■□□□□ 0.82
CHMP1A-205ENST00000548650 LY9Q9HBG7 655 aa20.16■□□□□ 0.82
CHMP1A-205ENST00000548650 GTF2IRD1Q9UHL9 959 aa20.16■□□□□ 0.82
CHMP1A-205ENST00000548650 PCDHA11Q9Y5I1 949 aa20.16■□□□□ 0.82
CHMP1A-205ENST00000548650 HAS3O00219 553 aa20.15■□□□□ 0.82
CHMP1A-205ENST00000548650 DDAH1O94760 285 aa20.15■□□□□ 0.82
CHMP1A-205ENST00000548650 MYOGP15173 224 aa20.15■□□□□ 0.82
CHMP1A-205ENST00000548650 UBA1P22314 1058 aaKnown RBP20.15■□□□□ 0.82
CHMP1A-205ENST00000548650 PSEN2P49810 448 aa20.15■□□□□ 0.82
CHMP1A-205ENST00000548650 RBL2Q08999 1139 aa20.15■□□□□ 0.82
CHMP1A-205ENST00000548650 COL9A3Q14050 684 aaPredicted RBP20.15■□□□□ 0.82
CHMP1A-205ENST00000548650 RETREG2Q8NC44 543 aa20.15■□□□□ 0.82
CHMP1A-205ENST00000548650 AFAP1L1Q8TED9 768 aa20.15■□□□□ 0.82
CHMP1A-205ENST00000548650 KATNAL1Q9BW62 490 aa20.15■□□□□ 0.82
CHMP1A-205ENST00000548650 LSG1Q9H089 658 aaKnown RBP20.15■□□□□ 0.82
CHMP1A-205ENST00000548650 COL4A4P53420 1690 aaPredicted RBP20.14■□□□□ 0.81
CHMP1A-205ENST00000548650 ACTN1P12814 892 aa20.14■□□□□ 0.81
CHMP1A-205ENST00000548650 CCND2P30279 289 aa20.14■□□□□ 0.81
CHMP1A-205ENST00000548650 MFSD10Q14728 455 aa20.14■□□□□ 0.81
CHMP1A-205ENST00000548650 MYSM1Q5VVJ2 828 aa20.14■□□□□ 0.81
CHMP1A-205ENST00000548650 PPP2R2DQ66LE6 453 aa20.14■□□□□ 0.81
CHMP1A-205ENST00000548650 KCNV1Q6PIU1 500 aa20.14■□□□□ 0.81
CHMP1A-205ENST00000548650 FCHSD1Q86WN1 690 aa20.14■□□□□ 0.81
CHMP1A-205ENST00000548650 DHX37Q8IY37 1157 aaKnown RBP20.14■□□□□ 0.81
CHMP1A-205ENST00000548650 ZNF654Q8IZM8 581 aa20.14■□□□□ 0.81
CHMP1A-205ENST00000548650 CCDC155Q8N6L0 562 aa20.14■□□□□ 0.81
CHMP1A-205ENST00000548650 GPKOWQ92917 476 aaPredicted RBP eCLIP20.14■□□□□ 0.81
CHMP1A-205ENST00000548650 SLC9A7Q96T83 725 aa20.14■□□□□ 0.81
CHMP1A-205ENST00000548650 MYL10Q9BUA6 226 aa20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms