RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 SEMA3FQ13275 785 aa17.55■□□□□ 0.4
LDLR-204ENST00000545707 ACBD3Q9H3P7 528 aa17.55■□□□□ 0.4
LDLR-204ENST00000545707 MED4Q9NPJ6 270 aa17.55■□□□□ 0.4
LDLR-204ENST00000545707 NLRC4Q9NPP4 1024 aa17.55■□□□□ 0.4
LDLR-204ENST00000545707 NRAPQ86VF7 1730 aa17.54■□□□□ 0.4
LDLR-204ENST00000545707 BUB1O43683 1085 aa17.54■□□□□ 0.4
LDLR-204ENST00000545707 TMC4Q7Z404 712 aa17.54■□□□□ 0.4
LDLR-204ENST00000545707 CNBD1Q8NA66 436 aa17.54■□□□□ 0.4
LDLR-204ENST00000545707 RIOX1Q9H6W3 641 aa17.54■□□□□ 0.4
LDLR-204ENST00000545707 FEZ2Q9UHY8 353 aaPredicted RBP17.54■□□□□ 0.4
LDLR-204ENST00000545707 MAST2Q6P0Q8 1798 aa17.54■□□□□ 0.4
LDLR-204ENST00000545707 TARSL2A2RTX5 802 aaKnown RBP17.53■□□□□ 0.4
LDLR-204ENST00000545707 F8W031 263 aaPredicted RBP17.53■□□□□ 0.4
LDLR-204ENST00000545707 USO1O60763 962 aaKnown RBP17.53■□□□□ 0.4
LDLR-204ENST00000545707 TACC1O75410 805 aa17.53■□□□□ 0.4
LDLR-204ENST00000545707 SSBP05455 408 aaKnown RBP eCLIP17.53■□□□□ 0.4
LDLR-204ENST00000545707 CDK17Q00537 523 aa17.53■□□□□ 0.4
LDLR-204ENST00000545707 MAN2A1Q16706 1144 aa17.53■□□□□ 0.4
LDLR-204ENST00000545707 MAP9Q49MG5 647 aa17.53■□□□□ 0.4
LDLR-204ENST00000545707 RAD54LQ92698 747 aa17.53■□□□□ 0.4
LDLR-204ENST00000545707 FGFBP2Q9BYJ0 223 aa17.53■□□□□ 0.4
LDLR-204ENST00000545707 JRKLQ9Y4A0 524 aa17.53■□□□□ 0.4
LDLR-204ENST00000545707 TNRC6CQ9HCJ0 1690 aaKnown RBP17.53■□□□□ 0.4
LDLR-204ENST00000545707 ANKRD65E5RJM6 399 aa17.53■□□□□ 0.4
LDLR-204ENST00000545707 AGPSO00116 658 aa17.53■□□□□ 0.4
LDLR-204ENST00000545707 PRPF6O94906 941 aaKnown RBP17.53■□□□□ 0.4
LDLR-204ENST00000545707 AKR1B1P15121 316 aa17.53■□□□□ 0.4
LDLR-204ENST00000545707 HNRNPH3P31942 346 aaKnown RBP17.53■□□□□ 0.4
LDLR-204ENST00000545707 SLC16A2P36021 539 aa17.53■□□□□ 0.4
LDLR-204ENST00000545707 MAGEA1P43355 309 aa17.53■□□□□ 0.4
LDLR-204ENST00000545707 DNA2P51530 1060 aa17.53■□□□□ 0.4
LDLR-204ENST00000545707 ADCY7P51828 1080 aa17.53■□□□□ 0.4
LDLR-204ENST00000545707 CACNB1Q02641 598 aaPredicted RBP17.53■□□□□ 0.4
LDLR-204ENST00000545707 RASSF7Q02833 373 aa17.53■□□□□ 0.4
LDLR-204ENST00000545707 TTBK2Q6IQ55 1244 aa17.53■□□□□ 0.4
LDLR-204ENST00000545707 LRRC31Q6UY01 552 aa17.53■□□□□ 0.4
LDLR-204ENST00000545707 LRRC55Q6ZSA7 311 aa17.53■□□□□ 0.4
LDLR-204ENST00000545707 C10orf67Q8IYJ2 551 aa17.53■□□□□ 0.4
LDLR-204ENST00000545707 TRIM58Q8NG06 486 aa17.53■□□□□ 0.4
LDLR-204ENST00000545707 BAP1Q92560 729 aa17.53■□□□□ 0.4
LDLR-204ENST00000545707 RPGRIP1Q96KN7 1286 aa17.53■□□□□ 0.4
LDLR-204ENST00000545707 AARSP49588 968 aaKnown RBP eCLIP17.52■□□□□ 0.4
LDLR-204ENST00000545707 TMEM266Q2M3C6 531 aa17.52■□□□□ 0.4
LDLR-204ENST00000545707 GUF1Q8N442 669 aaKnown RBP17.52■□□□□ 0.4
LDLR-204ENST00000545707 C8orf37Q96NL8 207 aa17.52■□□□□ 0.4
LDLR-204ENST00000545707 CRACR2AQ9BSW2 395 aa17.52■□□□□ 0.4
LDLR-204ENST00000545707 VIPAS39Q9H9C1 493 aa17.52■□□□□ 0.4
LDLR-204ENST00000545707 CWC15Q9P013 229 aaKnown RBP17.52■□□□□ 0.4
LDLR-204ENST00000545707 PVALEFA0A1B0GWK0 134 aa17.52■□□□□ 0.4
LDLR-204ENST00000545707 PPP1R11O60927 126 aaPredicted RBP17.52■□□□□ 0.4
LDLR-204ENST00000545707 PPP1R2P41236 205 aa17.52■□□□□ 0.4
LDLR-204ENST00000545707 FXR2P51116 673 aaKnown RBP eCLIP17.52■□□□□ 0.41e-6■□□□□ 10.3
LDLR-204ENST00000545707 KCNMA1Q12791 1236 aa17.52■□□□□ 0.4
LDLR-204ENST00000545707 MAPK8IP2Q13387 824 aaPredicted RBP17.52■□□□□ 0.4
LDLR-204ENST00000545707 KRT79Q5XKE5 535 aa17.52■□□□□ 0.4
LDLR-204ENST00000545707 SPATA4Q8NEY3 305 aa17.52■□□□□ 0.4
LDLR-204ENST00000545707 MTMR8Q96EF0 704 aa17.52■□□□□ 0.4
LDLR-204ENST00000545707 OSBPL9Q96SU4 736 aa17.52■□□□□ 0.4
LDLR-204ENST00000545707 TRIM34Q9BYJ4 488 aa17.52■□□□□ 0.4
LDLR-204ENST00000545707 TSGA10Q9BZW7 698 aa17.52■□□□□ 0.4
LDLR-204ENST00000545707 MTMR4Q9NYA4 1195 aa17.52■□□□□ 0.4
LDLR-204ENST00000545707 STK17AQ9UEE5 414 aa17.52■□□□□ 0.4
LDLR-204ENST00000545707 MYO1CO00159 1063 aa17.51■□□□□ 0.39
LDLR-204ENST00000545707 MCM3P25205 808 aa17.51■□□□□ 0.39
LDLR-204ENST00000545707 SLC1A4P43007 532 aa17.51■□□□□ 0.39
LDLR-204ENST00000545707 ENOX2Q16206 610 aaKnown RBP17.51■□□□□ 0.39
LDLR-204ENST00000545707 COBLL1Q53SF7 1204 aa17.51■□□□□ 0.39
LDLR-204ENST00000545707 DPP8Q6V1X1 898 aaPredicted RBP17.51■□□□□ 0.39
LDLR-204ENST00000545707 CACNA2D4Q7Z3S7 1137 aa17.51■□□□□ 0.39
LDLR-204ENST00000545707 NELFCDQ8IXH7 590 aa17.51■□□□□ 0.39
LDLR-204ENST00000545707 AFAP1L1Q8TED9 768 aa17.51■□□□□ 0.39
LDLR-204ENST00000545707 RPGRQ92834 1020 aaKnown RBP17.51■□□□□ 0.39
LDLR-204ENST00000545707 MS4A14Q96JA4 679 aa17.51■□□□□ 0.39
LDLR-204ENST00000545707 MYH1P12882 1939 aa17.51■□□□□ 0.39
LDLR-204ENST00000545707 DDX60LQ5H9U9 1706 aaKnown RBP17.51■□□□□ 0.39
LDLR-204ENST00000545707 NPHP3-ACAD11A0A0J9YXS1 232 aa17.51■□□□□ 0.39
LDLR-204ENST00000545707 NT5C2P49902 561 aa17.51■□□□□ 0.39
LDLR-204ENST00000545707 NAP1L1P55209 391 aaKnown RBP17.51■□□□□ 0.39
LDLR-204ENST00000545707 TDRD12Q587J7 1177 aaKnown RBP17.51■□□□□ 0.39
LDLR-204ENST00000545707 TRAPPC3LQ5T215 181 aa17.51■□□□□ 0.39
LDLR-204ENST00000545707 SND1Q7KZF4 910 aaKnown RBP eCLIP17.51■□□□□ 0.392e-7■■■□□ 16.9
LDLR-204ENST00000545707 AHDC1Q5TGY3 1603 aaPredicted RBP17.51■□□□□ 0.39
LDLR-204ENST00000545707 NAV1Q8NEY1 1877 aa17.5■□□□□ 0.39
LDLR-204ENST00000545707 ESYT2A0FGR8 921 aa17.5■□□□□ 0.39
LDLR-204ENST00000545707 TRAF5O00463 557 aa17.5■□□□□ 0.39
LDLR-204ENST00000545707 ARID5AQ03989 594 aa17.5■□□□□ 0.39
LDLR-204ENST00000545707 PRR5LQ6MZQ0 368 aa17.5■□□□□ 0.39
LDLR-204ENST00000545707 FAM196AQ6ZSG2 479 aa17.5■□□□□ 0.39
LDLR-204ENST00000545707 CCDC84Q86UT8 332 aaPredicted RBP17.5■□□□□ 0.39
LDLR-204ENST00000545707 HAS1Q92839 578 aa17.5■□□□□ 0.39
LDLR-204ENST00000545707 JMJD4Q9H9V9 463 aa17.5■□□□□ 0.39
LDLR-204ENST00000545707 POLLQ9UGP5 575 aa17.5■□□□□ 0.39
LDLR-204ENST00000545707 RSPH14Q9UHP6 348 aa17.5■□□□□ 0.39
LDLR-204ENST00000545707 RRP15Q9Y3B9 282 aaKnown RBP17.5■□□□□ 0.39
LDLR-204ENST00000545707 RGL2O15211 777 aa17.5■□□□□ 0.39
LDLR-204ENST00000545707 MARCH6O60337 910 aa17.5■□□□□ 0.39
LDLR-204ENST00000545707 PDXDC1Q6P996 788 aa17.5■□□□□ 0.39
LDLR-204ENST00000545707 SRLQ86TD4 932 aa17.5■□□□□ 0.39
LDLR-204ENST00000545707 ADGRF4Q8IZF3 695 aa17.5■□□□□ 0.39
LDLR-204ENST00000545707 FNBP4Q8N3X1 1017 aaPredicted RBP17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms