RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 ZBTB10Q96DT7 871 aa15.57■□□□□ 0.08
LIMS1-215ENST00000544547 EIF4ENIF1Q9NRA8 985 aaKnown RBP15.57■□□□□ 0.08
LIMS1-215ENST00000544547 INTS13Q9NVM9 706 aa15.57■□□□□ 0.08
LIMS1-215ENST00000544547 AMFRQ9UKV5 643 aa15.57■□□□□ 0.08
LIMS1-215ENST00000544547 ATP6V0A2Q9Y487 856 aa15.57■□□□□ 0.08
LIMS1-215ENST00000544547 USP17L12C9JPN9 530 aa15.57■□□□□ 0.08
LIMS1-215ENST00000544547 USP17L21D6R901 530 aa15.57■□□□□ 0.08
LIMS1-215ENST00000544547 PPP1R2P41236 205 aa15.57■□□□□ 0.08
LIMS1-215ENST00000544547 PPP2R2AP63151 447 aa15.57■□□□□ 0.08
LIMS1-215ENST00000544547 PTGISQ16647 500 aa15.57■□□□□ 0.08
LIMS1-215ENST00000544547 RABL6Q3YEC7 729 aaPredicted RBP15.57■□□□□ 0.08
LIMS1-215ENST00000544547 NUGGCQ68CJ6 796 aa15.57■□□□□ 0.08
LIMS1-215ENST00000544547 VPS52Q8N1B4 723 aa15.57■□□□□ 0.08
LIMS1-215ENST00000544547 GDAP1Q8TB36 358 aa15.57■□□□□ 0.08
LIMS1-215ENST00000544547 MYCBPAPQ8TBZ2 947 aa15.57■□□□□ 0.08
LIMS1-215ENST00000544547 SNX29Q8TEQ0 813 aa15.57■□□□□ 0.08
LIMS1-215ENST00000544547 LBHD1Q9BQE6 289 aaPredicted RBP15.57■□□□□ 0.08
LIMS1-215ENST00000544547 KIF9Q9HAQ2 790 aa15.57■□□□□ 0.08
LIMS1-215ENST00000544547 MTUS1Q9ULD2 1270 aa15.57■□□□□ 0.08
LIMS1-215ENST00000544547 PTPRUQ92729 1446 aa15.57■□□□□ 0.08
LIMS1-215ENST00000544547 CD44P16070 742 aaKnown RBP15.57■□□□□ 0.08
LIMS1-215ENST00000544547 TRAPPC11Q7Z392 1133 aa15.57■□□□□ 0.08
LIMS1-215ENST00000544547 ARMC9Q7Z3E5 817 aa15.57■□□□□ 0.08
LIMS1-215ENST00000544547 FAM133AQ8N9E0 248 aa15.57■□□□□ 0.08
LIMS1-215ENST00000544547 NSMCE1Q8WV22 266 aa15.57■□□□□ 0.08
LIMS1-215ENST00000544547 SGSM3Q96HU1 749 aa15.57■□□□□ 0.08
LIMS1-215ENST00000544547 NAP1L3Q99457 506 aaPredicted RBP15.57■□□□□ 0.08
LIMS1-215ENST00000544547 SEC31BQ9NQW1 1179 aa15.57■□□□□ 0.08
LIMS1-215ENST00000544547 BTG4Q9NY30 223 aa15.57■□□□□ 0.08
LIMS1-215ENST00000544547 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.57■□□□□ 0.08
LIMS1-215ENST00000544547 PREX1Q8TCU6 1659 aa15.57■□□□□ 0.08
LIMS1-215ENST00000544547 CYP2D7A0A087X1C5 515 aa15.57■□□□□ 0.08
LIMS1-215ENST00000544547 SPDYE3A6NKU9 549 aa15.57■□□□□ 0.08
LIMS1-215ENST00000544547 ERVV-2B6SEH9 535 aa15.57■□□□□ 0.08
LIMS1-215ENST00000544547 EVI5O60447 810 aa15.57■□□□□ 0.08
LIMS1-215ENST00000544547 PRPHP41219 470 aa15.57■□□□□ 0.08
LIMS1-215ENST00000544547 SEL1L2Q5TEA6 688 aa15.57■□□□□ 0.08
LIMS1-215ENST00000544547 CTTNBP2NLQ9P2B4 639 aa15.57■□□□□ 0.08
LIMS1-215ENST00000544547 PSMD14O00487 310 aa15.56■□□□□ 0.08
LIMS1-215ENST00000544547 MYBL1P10243 752 aa15.56■□□□□ 0.08
LIMS1-215ENST00000544547 CCDC174Q6PII3 467 aa15.56■□□□□ 0.08
LIMS1-215ENST00000544547 BLIDQ8IZY5 108 aa15.56■□□□□ 0.08
LIMS1-215ENST00000544547 TFCP2L1Q9NZI6 479 aa15.56■□□□□ 0.08
LIMS1-215ENST00000544547 CLTCQ00610 1675 aaKnown RBP15.56■□□□□ 0.08
LIMS1-215ENST00000544547 PXDNLA1KZ92 1463 aa15.56■□□□□ 0.08
LIMS1-215ENST00000544547 UBAP1LF5GYI3 381 aa15.56■□□□□ 0.08
LIMS1-215ENST00000544547 VWA3BQ502W6 1294 aa15.56■□□□□ 0.08
LIMS1-215ENST00000544547 LCORLQ8N3X6 602 aa15.56■□□□□ 0.08
LIMS1-215ENST00000544547 OGFOD1Q8N543 542 aa15.56■□□□□ 0.08
LIMS1-215ENST00000544547 SEC16BQ96JE7 1060 aa15.56■□□□□ 0.08
LIMS1-215ENST00000544547 NDST4Q9H3R1 872 aa15.56■□□□□ 0.08
LIMS1-215ENST00000544547 TNFAIP3P21580 790 aa15.56■□□□□ 0.08
LIMS1-215ENST00000544547 DDX42Q86XP3 938 aaKnown RBP eCLIP15.56■□□□□ 0.08
LIMS1-215ENST00000544547 RPUSD2Q8IZ73 545 aaKnown RBP15.56■□□□□ 0.08
LIMS1-215ENST00000544547 C8orf37Q96NL8 207 aa15.56■□□□□ 0.08
LIMS1-215ENST00000544547 PTPN22Q9Y2R2 807 aa15.56■□□□□ 0.08
LIMS1-215ENST00000544547 NEDD4P46934 1319 aa15.56■□□□□ 0.08
LIMS1-215ENST00000544547 LRRC53A6NM62 1247 aa15.55■□□□□ 0.08
LIMS1-215ENST00000544547 FAM107AO95990 144 aa15.55■□□□□ 0.08
LIMS1-215ENST00000544547 KLK7P49862 253 aa15.55■□□□□ 0.08
LIMS1-215ENST00000544547 IRX1P78414 480 aaPredicted RBP15.55■□□□□ 0.08
LIMS1-215ENST00000544547 HLFQ16534 295 aa15.55■□□□□ 0.08
LIMS1-215ENST00000544547 CAPN12Q6ZSI9 719 aa15.55■□□□□ 0.08
LIMS1-215ENST00000544547 HEG1Q9ULI3 1381 aa15.55■□□□□ 0.08
LIMS1-215ENST00000544547 PGRMC1O00264 195 aaKnown RBP15.55■□□□□ 0.08
LIMS1-215ENST00000544547 CDC25CP30307 473 aa15.55■□□□□ 0.08
LIMS1-215ENST00000544547 PLCB3Q01970 1234 aa15.55■□□□□ 0.08
LIMS1-215ENST00000544547 PLS1Q14651 629 aa15.55■□□□□ 0.08
LIMS1-215ENST00000544547 LRRC14Q15048 493 aa15.55■□□□□ 0.08
LIMS1-215ENST00000544547 SH3GL3Q99963 347 aa15.55■□□□□ 0.08
LIMS1-215ENST00000544547 FBXL5Q9UKA1 691 aa15.55■□□□□ 0.08
LIMS1-215ENST00000544547 ZBTB1Q9Y2K1 713 aa15.55■□□□□ 0.08
LIMS1-215ENST00000544547 SCG2P13521 617 aa15.55■□□□□ 0.08
LIMS1-215ENST00000544547 PTPAQ15257 358 aa15.55■□□□□ 0.08
LIMS1-215ENST00000544547 ZNF449Q6P9G9 518 aa15.55■□□□□ 0.08
LIMS1-215ENST00000544547 PLVAPQ9BX97 442 aa15.55■□□□□ 0.08
LIMS1-215ENST00000544547 TBK1Q9UHD2 729 aa15.55■□□□□ 0.08
LIMS1-215ENST00000544547 HPS5Q9UPZ3 1129 aa15.55■□□□□ 0.08
LIMS1-215ENST00000544547 PP2D1A8MPX8 630 aa15.55■□□□□ 0.08
LIMS1-215ENST00000544547 PPP1R12AO14974 1030 aaPredicted RBP15.55■□□□□ 0.08
LIMS1-215ENST00000544547 CCNE1P24864 410 aa15.55■□□□□ 0.08
LIMS1-215ENST00000544547 ANTXR2P58335 489 aa15.55■□□□□ 0.08
LIMS1-215ENST00000544547 ZNF579Q8NAF0 562 aaKnown RBP15.55■□□□□ 0.08
LIMS1-215ENST00000544547 PSMD1Q99460 953 aa15.55■□□□□ 0.08
LIMS1-215ENST00000544547 FMO2Q99518 471 aa15.55■□□□□ 0.08
LIMS1-215ENST00000544547 RNF26Q9BY78 433 aaPredicted RBP15.55■□□□□ 0.08
LIMS1-215ENST00000544547 DNAI2Q9GZS0 605 aa15.55■□□□□ 0.08
LIMS1-215ENST00000544547 DAAM1Q9Y4D1 1078 aa15.55■□□□□ 0.08
LIMS1-215ENST00000544547 TXNDC9O14530 226 aa15.54■□□□□ 0.08
LIMS1-215ENST00000544547 H2AFZP0C0S5 128 aa15.54■□□□□ 0.08
LIMS1-215ENST00000544547 MYBL2P10244 700 aa15.54■□□□□ 0.08
LIMS1-215ENST00000544547 KRT15P19012 456 aa15.54■□□□□ 0.08
LIMS1-215ENST00000544547 SMTNP53814 917 aa15.54■□□□□ 0.08
LIMS1-215ENST00000544547 UAP1Q16222 522 aaPredicted RBP15.54■□□□□ 0.08
LIMS1-215ENST00000544547 H2AFVQ71UI9 128 aa15.54■□□□□ 0.08
LIMS1-215ENST00000544547 RAB3IPQ96QF0 476 aaPredicted RBP15.54■□□□□ 0.08
LIMS1-215ENST00000544547 ZSCAN10Q96SZ4 725 aaPredicted RBP15.54■□□□□ 0.08
LIMS1-215ENST00000544547 FAM114A2Q9NRY5 505 aa15.54■□□□□ 0.08
LIMS1-215ENST00000544547 HPSEQ9Y251 543 aa15.54■□□□□ 0.08
LIMS1-215ENST00000544547 TOM1O60784 492 aa15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms