RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 SUGP1Q8IWZ8 645 aaKnown RBP8.52□□□□□ -1.05
VPS13D-211ENST00000543710 DIS3L2Q8IYB7 885 aaKnown RBP8.52□□□□□ -1.05
VPS13D-211ENST00000543710 KIRREL3Q8IZU9 778 aa8.52□□□□□ -1.05
VPS13D-211ENST00000543710 CCDC89Q8N998 374 aa8.52□□□□□ -1.05
VPS13D-211ENST00000543710 ZNF579Q8NAF0 562 aaKnown RBP8.52□□□□□ -1.05
VPS13D-211ENST00000543710 TEKT3Q9BXF9 490 aa8.52□□□□□ -1.05
VPS13D-211ENST00000543710 NUF2Q9BZD4 464 aa8.52□□□□□ -1.05
VPS13D-211ENST00000543710 TMX1Q9H3N1 280 aa8.52□□□□□ -1.05
VPS13D-211ENST00000543710 CLNS1AP54105 237 aaKnown RBP8.51□□□□□ -1.05
VPS13D-211ENST00000543710 ZBTB17Q13105 803 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 BFSP2Q13515 415 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 LONRF2Q1L5Z9 754 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 ARHGEF16Q5VV41 709 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 CC2D1AQ6P1N0 951 aaPredicted RBP8.51□□□□□ -1.05
VPS13D-211ENST00000543710 PIK3AP1Q6ZUJ8 805 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 BLIDQ8IZY5 108 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 OTUD5Q96G74 571 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 CCDC17Q96LX7 622 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 CARD14Q9BXL6 1004 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 RNF208Q9H0X6 261 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 NRBP2Q9NSY0 501 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 MED7O43513 233 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 KRT17Q04695 432 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 DMTNQ08495 405 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 CUL4AQ13619 759 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 DCAF17Q5H9S7 520 aaPredicted RBP8.51□□□□□ -1.05
VPS13D-211ENST00000543710 MICALL2Q8IY33 904 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 RNF34Q969K3 372 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 GFM2Q969S9 779 aaKnown RBP8.51□□□□□ -1.05
VPS13D-211ENST00000543710 KIFC2Q96AC6 838 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 SKA1Q96BD8 255 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 PLEKHF1Q96S99 279 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 MRGBPQ9NV56 204 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 MAP3K20Q9NYL2 800 aaKnown RBP8.51□□□□□ -1.05
VPS13D-211ENST00000543710 ANGPTL2Q9UKU9 493 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 COL4A3BPQ9Y5P4 624 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 CLRN2A0PK11 232 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 RGS16O15492 202 aaPredicted RBP8.51□□□□□ -1.05
VPS13D-211ENST00000543710 TNNC2P02585 160 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 OR52Z1P0C646 297 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 IL9RQ01113 521 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 GRAPQ13588 217 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 ZNF174Q15697 407 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 RC3H1Q5TC82 1133 aaKnown RBP8.51□□□□□ -1.05
VPS13D-211ENST00000543710 MYSM1Q5VVJ2 828 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 ARL6IP4Q66PJ3 421 aaKnown RBP8.51□□□□□ -1.05
VPS13D-211ENST00000543710 GRAPLQ8TC17 118 aaPredicted RBP8.51□□□□□ -1.05
VPS13D-211ENST00000543710 SNX29Q8TEQ0 813 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 CDKL2Q92772 493 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 CDHR1Q96JP9 859 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 LSM14BQ9BX40 385 aaKnown RBP8.51□□□□□ -1.05
VPS13D-211ENST00000543710 EDEM3Q9BZQ6 932 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 DBNDD1Q9H9R9 158 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 PPCSQ9HAB8 311 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 PCDHA4Q9UN74 947 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 CRB1P82279 1406 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 ZNF853P0CG23 659 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 STAG3L1P0CL83 205 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 PCK1P35558 622 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 TRMT1LQ7Z2T5 733 aaKnown RBP8.51□□□□□ -1.05
VPS13D-211ENST00000543710 ELOA2Q8IYF1 753 aaPredicted RBP8.51□□□□□ -1.05
VPS13D-211ENST00000543710 IQGAP1P46940 1657 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 SPATA31A5Q5VU36 1347 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 SPATA31A7Q8IWB4 1347 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 NEURL1BA8MQ27 555 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 GIPC1O14908 333 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 RPN1P04843 607 aaKnown RBP8.51□□□□□ -1.05
VPS13D-211ENST00000543710 XPAP23025 273 aaPredicted RBP8.51□□□□□ -1.05
VPS13D-211ENST00000543710 GBP7Q8N8V2 638 aaPredicted RBP8.51□□□□□ -1.05
VPS13D-211ENST00000543710 KIFC3Q9BVG8 833 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 KATNAL1Q9BW62 490 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 CTTNBP2NLQ9P2B4 639 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 CCPG1Q9ULG6 757 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 DEPDC5O75140 1603 aa8.51□□□□□ -1.05
VPS13D-211ENST00000543710 KYAT1Q16773 422 aa8.5□□□□□ -1.05
VPS13D-211ENST00000543710 SDE2Q6IQ49 451 aa8.5□□□□□ -1.05
VPS13D-211ENST00000543710 CLEC17AQ6ZS10 378 aa8.5□□□□□ -1.05
VPS13D-211ENST00000543710 ZBTB8OSQ8IWT0 167 aa8.5□□□□□ -1.05
VPS13D-211ENST00000543710 GADD45GIP1Q8TAE8 222 aaPredicted RBP8.5□□□□□ -1.05
VPS13D-211ENST00000543710 CABS1Q96KC9 395 aa8.5□□□□□ -1.05
VPS13D-211ENST00000543710 MYCBPQ99417 103 aaPredicted RBP8.5□□□□□ -1.05
VPS13D-211ENST00000543710 GCOM2Q9BZD3 368 aaPredicted RBP8.5□□□□□ -1.05
VPS13D-211ENST00000543710 POLR2DO15514 142 aaKnown RBP8.5□□□□□ -1.05
VPS13D-211ENST00000543710 XRCC5P13010 732 aaKnown RBP8.5□□□□□ -1.05
VPS13D-211ENST00000543710 PFKFB1P16118 471 aa8.5□□□□□ -1.05
VPS13D-211ENST00000543710 FKBP1BP68106 108 aa8.5□□□□□ -1.05
VPS13D-211ENST00000543710 PTPAQ15257 358 aa8.5□□□□□ -1.05
VPS13D-211ENST00000543710 CCDC24Q8N4L8 307 aa8.5□□□□□ -1.05
VPS13D-211ENST00000543710 ZBTB38Q8NAP3 1195 aaPredicted RBP8.5□□□□□ -1.05
VPS13D-211ENST00000543710 WRNIP1Q96S55 665 aa8.5□□□□□ -1.05
VPS13D-211ENST00000543710 MAP3K19Q56UN5 1328 aa8.5□□□□□ -1.05
VPS13D-211ENST00000543710 ASB14A6NK59 587 aa8.5□□□□□ -1.05
VPS13D-211ENST00000543710 IPO5O00410 1097 aaKnown RBP8.5□□□□□ -1.05
VPS13D-211ENST00000543710 RASGRF2O14827 1237 aa8.5□□□□□ -1.05
VPS13D-211ENST00000543710 ATF2P15336 505 aa8.5□□□□□ -1.05
VPS13D-211ENST00000543710 REXO1Q8N1G1 1221 aaKnown RBP8.5□□□□□ -1.05
VPS13D-211ENST00000543710 TTC39CQ8N584 583 aa8.5□□□□□ -1.05
VPS13D-211ENST00000543710 C7orf31Q8N865 590 aa8.5□□□□□ -1.05
VPS13D-211ENST00000543710 PCSK9Q8NBP7 692 aaKnown RBP8.5□□□□□ -1.05
VPS13D-211ENST00000543710 GBP5Q96PP8 586 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms