RNA–Protein interactions for RNA: ENST00000542310.1

VPS33A-206, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 756 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-206ENST00000542310 FAM47CQ5HY64 1035 aa18.12■□□□□ 0.49
VPS33A-206ENST00000542310 KCNV1Q6PIU1 500 aa18.12■□□□□ 0.49
VPS33A-206ENST00000542310 AFG1LQ8WV93 481 aa18.12■□□□□ 0.49
VPS33A-206ENST00000542310 PIGSQ96S52 555 aa18.12■□□□□ 0.49
VPS33A-206ENST00000542310 ESYT1Q9BSJ8 1104 aa18.12■□□□□ 0.49
VPS33A-206ENST00000542310 SPZ1Q9BXG8 430 aa18.12■□□□□ 0.49
VPS33A-206ENST00000542310 LSG1Q9H089 658 aaKnown RBP18.12■□□□□ 0.49
VPS33A-206ENST00000542310 LY9Q9HBG7 655 aa18.12■□□□□ 0.49
VPS33A-206ENST00000542310 DDX41Q9UJV9 622 aaKnown RBP18.12■□□□□ 0.49
VPS33A-206ENST00000542310 MRVI1Q9Y6F6 885 aa18.12■□□□□ 0.49
VPS33A-206ENST00000542310 FRMPD4Q14CM0 1322 aa18.12■□□□□ 0.49
VPS33A-206ENST00000542310 GCOM1H8Y6P7 765 aaPredicted RBP18.11■□□□□ 0.49
VPS33A-206ENST00000542310 POLR2MP0CAP2 368 aa18.11■□□□□ 0.49
VPS33A-206ENST00000542310 SMARCA1P28370 1054 aa18.11■□□□□ 0.49
VPS33A-206ENST00000542310 KIF5BP33176 963 aa18.11■□□□□ 0.49
VPS33A-206ENST00000542310 PGM5Q15124 567 aa18.11■□□□□ 0.49
VPS33A-206ENST00000542310 DGKDQ16760 1214 aa18.11■□□□□ 0.49
VPS33A-206ENST00000542310 BMP2KLQ5H9B9 411 aa18.11■□□□□ 0.49
VPS33A-206ENST00000542310 CASC1Q6TDU7 716 aa18.11■□□□□ 0.49
VPS33A-206ENST00000542310 ZNF654Q8IZM8 581 aa18.11■□□□□ 0.49
VPS33A-206ENST00000542310 PPTC7Q8NI37 304 aa18.11■□□□□ 0.49
VPS33A-206ENST00000542310 TMEM87BQ96K49 555 aa18.11■□□□□ 0.49
VPS33A-206ENST00000542310 KATNAL1Q9BW62 490 aa18.11■□□□□ 0.49
VPS33A-206ENST00000542310 PBX4Q9BYU1 374 aa18.11■□□□□ 0.49
VPS33A-206ENST00000542310 TRIP12Q14669 1992 aaPredicted RBP18.11■□□□□ 0.49
VPS33A-206ENST00000542310 CYP2C9P11712 490 aa18.1■□□□□ 0.49
VPS33A-206ENST00000542310 HOXD8P13378 290 aaPredicted RBP18.1■□□□□ 0.49
VPS33A-206ENST00000542310 FOSL2P15408 326 aa18.1■□□□□ 0.49
VPS33A-206ENST00000542310 CASTP20810 708 aaKnown RBP18.1■□□□□ 0.49
VPS33A-206ENST00000542310 MCM5P33992 734 aa18.1■□□□□ 0.49
VPS33A-206ENST00000542310 BFSP2Q13515 415 aa18.1■□□□□ 0.49
VPS33A-206ENST00000542310 LAMC2Q13753 1193 aa18.1■□□□□ 0.49
VPS33A-206ENST00000542310 CENPQQ7L2Z9 268 aaPredicted RBP18.1■□□□□ 0.49
VPS33A-206ENST00000542310 CHST3Q7LGC8 479 aa18.1■□□□□ 0.49
VPS33A-206ENST00000542310 TMTC2Q8N394 836 aa18.1■□□□□ 0.49
VPS33A-206ENST00000542310 CCDC155Q8N6L0 562 aa18.1■□□□□ 0.49
VPS33A-206ENST00000542310 MAFAQ8NHW3 353 aaPredicted RBP18.1■□□□□ 0.49
VPS33A-206ENST00000542310 CTCFLQ8NI51 663 aaPredicted RBP18.1■□□□□ 0.49
VPS33A-206ENST00000542310 MYLIPQ8WY64 445 aa18.1■□□□□ 0.49
VPS33A-206ENST00000542310 LZTS2Q9BRK4 669 aa18.1■□□□□ 0.49
VPS33A-206ENST00000542310 ZNF576Q9H609 170 aa18.1■□□□□ 0.49
VPS33A-206ENST00000542310 SH2B2O14492 632 aaPredicted RBP18.09■□□□□ 0.49
VPS33A-206ENST00000542310 PRC1O43663 620 aa18.09■□□□□ 0.49
VPS33A-206ENST00000542310 STAM2O75886 525 aa18.09■□□□□ 0.49
VPS33A-206ENST00000542310 F2P00734 622 aa18.09■□□□□ 0.49
VPS33A-206ENST00000542310 TGFB3P10600 412 aa18.09■□□□□ 0.49
VPS33A-206ENST00000542310 CCND2P30279 289 aa18.09■□□□□ 0.49
VPS33A-206ENST00000542310 VSIG10LQ86VR7 867 aa18.09■□□□□ 0.49
VPS33A-206ENST00000542310 CAGE1Q8TC20 777 aa18.09■□□□□ 0.49
VPS33A-206ENST00000542310 SCLYQ96I15 445 aa18.09■□□□□ 0.49
VPS33A-206ENST00000542310 CXXC1Q9P0U4 656 aaPredicted RBP18.09■□□□□ 0.49
VPS33A-206ENST00000542310 SLC27A2O14975 620 aa18.08■□□□□ 0.48
VPS33A-206ENST00000542310 RGS20O76081 388 aa18.08■□□□□ 0.48
VPS33A-206ENST00000542310 HOXA13P31271 388 aaPredicted RBP18.08■□□□□ 0.48
VPS33A-206ENST00000542310 LIFRP42702 1097 aa18.08■□□□□ 0.48
VPS33A-206ENST00000542310 GNAQP50148 359 aa18.08■□□□□ 0.48
VPS33A-206ENST00000542310 RBL2Q08999 1139 aa18.08■□□□□ 0.48
VPS33A-206ENST00000542310 OTOP2Q7RTS6 562 aa18.08■□□□□ 0.48
VPS33A-206ENST00000542310 PHF6Q8IWS0 365 aaKnown RBP eCLIP18.08■□□□□ 0.48
VPS33A-206ENST00000542310 KAT2BQ92831 832 aa18.08■□□□□ 0.48
VPS33A-206ENST00000542310 VWCEQ96DN2 955 aa18.08■□□□□ 0.48
VPS33A-206ENST00000542310 MSRAQ9UJ68 235 aa18.08■□□□□ 0.48
VPS33A-206ENST00000542310 NOD1Q9Y239 953 aa18.08■□□□□ 0.48
VPS33A-206ENST00000542310 A0A0C4DFX4 3053 aa18.07■□□□□ 0.48
VPS33A-206ENST00000542310 CALM1P0DP23 149 aa18.07■□□□□ 0.48
VPS33A-206ENST00000542310 CALM2P0DP24 149 aa18.07■□□□□ 0.48
VPS33A-206ENST00000542310 CALM3P0DP25 149 aa18.07■□□□□ 0.48
VPS33A-206ENST00000542310 MYCLP12524 364 aaPredicted RBP18.07■□□□□ 0.48
VPS33A-206ENST00000542310 PBX2P40425 430 aa18.07■□□□□ 0.48
VPS33A-206ENST00000542310 GRIN2CQ14957 1233 aa18.07■□□□□ 0.48
VPS33A-206ENST00000542310 NECTIN1Q15223 517 aa18.07■□□□□ 0.48
VPS33A-206ENST00000542310 PTGISQ16647 500 aa18.07■□□□□ 0.48
VPS33A-206ENST00000542310 CREB3L3Q68CJ9 461 aa18.07■□□□□ 0.48
VPS33A-206ENST00000542310 DHX37Q8IY37 1157 aaKnown RBP18.07■□□□□ 0.48
VPS33A-206ENST00000542310 RETREG2Q8NC44 543 aa18.07■□□□□ 0.48
VPS33A-206ENST00000542310 IL31RAQ8NI17 732 aa18.07■□□□□ 0.48
VPS33A-206ENST00000542310 AFAP1L1Q8TED9 768 aa18.07■□□□□ 0.48
VPS33A-206ENST00000542310 RRP36Q96EU6 259 aaKnown RBP18.07■□□□□ 0.48
VPS33A-206ENST00000542310 SEC63Q9UGP8 760 aaKnown RBP18.07■□□□□ 0.48
VPS33A-206ENST00000542310 GTF2IRD1Q9UHL9 959 aa18.07■□□□□ 0.48
VPS33A-206ENST00000542310 TET1Q8NFU7 2136 aa18.07■□□□□ 0.48
VPS33A-206ENST00000542310 PRUNE2Q8WUY3 3088 aa18.06■□□□□ 0.48
VPS33A-206ENST00000542310 MYO9BQ13459 2157 aa18.06■□□□□ 0.48
VPS33A-206ENST00000542310 DOCK5Q9H7D0 1870 aa18.06■□□□□ 0.48
VPS33A-206ENST00000542310 CCDC69A6NI79 296 aa18.06■□□□□ 0.48
VPS33A-206ENST00000542310 GRXCR1A8MXD5 290 aa18.06■□□□□ 0.48
VPS33A-206ENST00000542310 HAS3O00219 553 aa18.06■□□□□ 0.48
VPS33A-206ENST00000542310 PIK3CDO00329 1044 aa18.06■□□□□ 0.48
VPS33A-206ENST00000542310 PARNO95453 639 aaKnown RBP18.06■□□□□ 0.48
VPS33A-206ENST00000542310 IQCF3P0C7M6 154 aa18.06■□□□□ 0.48
VPS33A-206ENST00000542310 ACTN1P12814 892 aa18.06■□□□□ 0.48
VPS33A-206ENST00000542310 UBA1P22314 1058 aaKnown RBP18.06■□□□□ 0.48
VPS33A-206ENST00000542310 GNPTABQ3T906 1256 aa18.06■□□□□ 0.48
VPS33A-206ENST00000542310 CELF3Q5SZQ8 465 aaKnown RBP18.06■□□□□ 0.48
VPS33A-206ENST00000542310 MYSM1Q5VVJ2 828 aa18.06■□□□□ 0.48
VPS33A-206ENST00000542310 ANO2Q9NQ90 1003 aa18.06■□□□□ 0.48
VPS33A-206ENST00000542310 SLC4A7Q9Y6M7 1214 aa18.06■□□□□ 0.48
VPS33A-206ENST00000542310 DLL1O00548 723 aa18.05■□□□□ 0.48
VPS33A-206ENST00000542310 ICAM3P32942 547 aa18.05■□□□□ 0.48
VPS33A-206ENST00000542310 PSEN2P49810 448 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms