RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 RFC2P35250 354 aa18.09■□□□□ 0.49
CLSTN3-213ENST00000541953 PTPN11Q06124 597 aaPredicted RBP18.09■□□□□ 0.49
CLSTN3-213ENST00000541953 ANKS1AQ92625 1134 aa18.09■□□□□ 0.49
CLSTN3-213ENST00000541953 ZSCAN10Q96SZ4 725 aaPredicted RBP18.09■□□□□ 0.49
CLSTN3-213ENST00000541953 FTOQ9C0B1 505 aaKnown RBP eCLIP18.09■□□□□ 0.49
CLSTN3-213ENST00000541953 VAT1LQ9HCJ6 419 aa18.09■□□□□ 0.49
CLSTN3-213ENST00000541953 ZSWIM5Q9P217 1185 aa18.09■□□□□ 0.49
CLSTN3-213ENST00000541953 KPNA6O60684 536 aa18.08■□□□□ 0.48
CLSTN3-213ENST00000541953 NBNO60934 754 aa18.08■□□□□ 0.48
CLSTN3-213ENST00000541953 RGS20O76081 388 aa18.08■□□□□ 0.48
CLSTN3-213ENST00000541953 GH1P01241 217 aa18.08■□□□□ 0.48
CLSTN3-213ENST00000541953 ZNF286BP0CG31 522 aa18.08■□□□□ 0.48
CLSTN3-213ENST00000541953 ACTN1P12814 892 aa18.08■□□□□ 0.48
CLSTN3-213ENST00000541953 WDR5P61964 334 aaKnown RBP18.08■□□□□ 0.48
CLSTN3-213ENST00000541953 BRDTQ58F21 947 aaPredicted RBP18.08■□□□□ 0.48
CLSTN3-213ENST00000541953 TRAF7Q6Q0C0 670 aa18.08■□□□□ 0.48
CLSTN3-213ENST00000541953 CHD1LQ86WJ1 897 aa18.08■□□□□ 0.48
CLSTN3-213ENST00000541953 TICAM2Q86XR7 235 aa18.08■□□□□ 0.48
CLSTN3-213ENST00000541953 IL31RAQ8NI17 732 aa18.08■□□□□ 0.48
CLSTN3-213ENST00000541953 ZFP91Q96JP5 570 aaPredicted RBP18.08■□□□□ 0.48
CLSTN3-213ENST00000541953 RMDN3Q96TC7 470 aa18.08■□□□□ 0.48
CLSTN3-213ENST00000541953 KAT14Q9H8E8 782 aa18.08■□□□□ 0.48
CLSTN3-213ENST00000541953 HDAC6Q9UBN7 1215 aa18.08■□□□□ 0.48
CLSTN3-213ENST00000541953 DDX41Q9UJV9 622 aaKnown RBP18.08■□□□□ 0.48
CLSTN3-213ENST00000541953 PNMA2Q9UL42 364 aa18.08■□□□□ 0.48
CLSTN3-213ENST00000541953 ZNF200P98182 395 aaPredicted RBP18.07■□□□□ 0.48
CLSTN3-213ENST00000541953 GRB10Q13322 594 aa18.07■□□□□ 0.48
CLSTN3-213ENST00000541953 BFSP2Q13515 415 aa18.07■□□□□ 0.48
CLSTN3-213ENST00000541953 MBTPS1Q14703 1052 aa18.07■□□□□ 0.48
CLSTN3-213ENST00000541953 SESTD1Q86VW0 696 aa18.07■□□□□ 0.48
CLSTN3-213ENST00000541953 RETREG2Q8NC44 543 aa18.07■□□□□ 0.48
CLSTN3-213ENST00000541953 NSUN6Q8TEA1 469 aaKnown RBP18.07■□□□□ 0.48
CLSTN3-213ENST00000541953 MPHOSPH6Q99547 160 aaKnown RBP18.07■□□□□ 0.48
CLSTN3-213ENST00000541953 OSBPL3Q9H4L5 887 aa18.07■□□□□ 0.48
CLSTN3-213ENST00000541953 PXMP2Q9NR77 195 aa18.07■□□□□ 0.48
CLSTN3-213ENST00000541953 NOD1Q9Y239 953 aa18.07■□□□□ 0.48
CLSTN3-213ENST00000541953 POU3F3P20264 500 aaPredicted RBP18.06■□□□□ 0.48
CLSTN3-213ENST00000541953 NUCB1Q02818 461 aa18.06■□□□□ 0.48
CLSTN3-213ENST00000541953 SKIV2LQ15477 1246 aaKnown RBP18.06■□□□□ 0.48
CLSTN3-213ENST00000541953 TRIM71Q2Q1W2 868 aaKnown RBP18.06■□□□□ 0.48
CLSTN3-213ENST00000541953 ASPRV1Q53RT3 343 aa18.06■□□□□ 0.48
CLSTN3-213ENST00000541953 CYB5R4Q7L1T6 521 aa18.06■□□□□ 0.48
CLSTN3-213ENST00000541953 LRRC8DQ7L1W4 858 aa18.06■□□□□ 0.48
CLSTN3-213ENST00000541953 IQCA1Q86XH1 822 aa18.06■□□□□ 0.48
CLSTN3-213ENST00000541953 FBXO11Q86XK2 927 aa18.06■□□□□ 0.48
CLSTN3-213ENST00000541953 PHOSPHO2Q8TCD6 241 aa18.06■□□□□ 0.48
CLSTN3-213ENST00000541953 GPKOWQ92917 476 aaPredicted RBP eCLIP18.06■□□□□ 0.484e-9■■■■■ 56.5
CLSTN3-213ENST00000541953 ALG1Q9BT22 464 aa18.06■□□□□ 0.48
CLSTN3-213ENST00000541953 GTF2IRD1Q9UHL9 959 aa18.06■□□□□ 0.48
CLSTN3-213ENST00000541953 DOCK5Q9H7D0 1870 aa18.05■□□□□ 0.48
CLSTN3-213ENST00000541953 BRWD1Q9NSI6 2320 aa18.05■□□□□ 0.48
CLSTN3-213ENST00000541953 DHX16O60231 1041 aaKnown RBP18.05■□□□□ 0.48
CLSTN3-213ENST00000541953 CFBP00751 764 aa18.05■□□□□ 0.48
CLSTN3-213ENST00000541953 PARP1P09874 1014 aaKnown RBP18.05■□□□□ 0.48
CLSTN3-213ENST00000541953 CKBP12277 381 aa18.05■□□□□ 0.48
CLSTN3-213ENST00000541953 PSEN2P49810 448 aa18.05■□□□□ 0.48
CLSTN3-213ENST00000541953 HSD17B4P51659 736 aa18.05■□□□□ 0.48
CLSTN3-213ENST00000541953 STXBP2Q15833 593 aa18.05■□□□□ 0.48
CLSTN3-213ENST00000541953 CAGE1Q8TC20 777 aa18.05■□□□□ 0.48
CLSTN3-213ENST00000541953 AFAP1L1Q8TED9 768 aa18.05■□□□□ 0.48
CLSTN3-213ENST00000541953 GDPD5Q8WTR4 605 aa18.05■□□□□ 0.48
CLSTN3-213ENST00000541953 BCAS3Q9H6U6 928 aa18.05■□□□□ 0.48
CLSTN3-213ENST00000541953 SENP2Q9HC62 589 aa18.05■□□□□ 0.48
CLSTN3-213ENST00000541953 TAF6LQ9Y6J9 622 aa18.05■□□□□ 0.48
CLSTN3-213ENST00000541953 BAZ2BQ9UIF8 2168 aaKnown RBP18.04■□□□□ 0.48
CLSTN3-213ENST00000541953 HAS3O00219 553 aa18.04■□□□□ 0.48
CLSTN3-213ENST00000541953 TLL1O43897 1013 aa18.04■□□□□ 0.48
CLSTN3-213ENST00000541953 BAIAP3O94812 1187 aa18.04■□□□□ 0.48
CLSTN3-213ENST00000541953 F2P00734 622 aa18.04■□□□□ 0.48
CLSTN3-213ENST00000541953 CXCL10P02778 98 aa18.04■□□□□ 0.48
CLSTN3-213ENST00000541953 NR3C2P08235 984 aa18.04■□□□□ 0.48
CLSTN3-213ENST00000541953 SELPP16109 830 aa18.04■□□□□ 0.48
CLSTN3-213ENST00000541953 HOXA13P31271 388 aaPredicted RBP18.04■□□□□ 0.48
CLSTN3-213ENST00000541953 MFAP1P55081 439 aaKnown RBP18.04■□□□□ 0.48
CLSTN3-213ENST00000541953 SP2Q02086 613 aa18.04■□□□□ 0.48
CLSTN3-213ENST00000541953 RBL2Q08999 1139 aa18.04■□□□□ 0.48
CLSTN3-213ENST00000541953 SEC23AQ15436 765 aa18.04■□□□□ 0.48
CLSTN3-213ENST00000541953 ARHGEF16Q5VV41 709 aa18.04■□□□□ 0.48
CLSTN3-213ENST00000541953 EXOC6Q8TAG9 804 aa18.04■□□□□ 0.48
CLSTN3-213ENST00000541953 EMID1Q96A84 441 aaPredicted RBP18.04■□□□□ 0.48
CLSTN3-213ENST00000541953 MTMR8Q96EF0 704 aa18.04■□□□□ 0.48
CLSTN3-213ENST00000541953 IWS1Q96ST2 819 aa18.04■□□□□ 0.48
CLSTN3-213ENST00000541953 DSCC1Q9BVC3 393 aa18.04■□□□□ 0.48
CLSTN3-213ENST00000541953 OSBPL7Q9BZF2 842 aa18.04■□□□□ 0.48
CLSTN3-213ENST00000541953 DIAPH3Q9NSV4 1193 aa18.04■□□□□ 0.48
CLSTN3-213ENST00000541953 MAD2L2Q9UI95 211 aa18.04■□□□□ 0.48
CLSTN3-213ENST00000541953 MRPL11Q9Y3B7 192 aaKnown RBP18.04■□□□□ 0.48
CLSTN3-213ENST00000541953 MRVI1Q9Y6F6 885 aa18.04■□□□□ 0.48
CLSTN3-213ENST00000541953 SIP14410 1827 aa18.04■□□□□ 0.48
CLSTN3-213ENST00000541953 B4DLN1 442 aa18.03■□□□□ 0.48
CLSTN3-213ENST00000541953 MRPL12P52815 198 aaKnown RBP18.03■□□□□ 0.48
CLSTN3-213ENST00000541953 GHRHRQ02643 423 aa18.03■□□□□ 0.48
CLSTN3-213ENST00000541953 MFSD10Q14728 455 aa18.03■□□□□ 0.48
CLSTN3-213ENST00000541953 DGKDQ16760 1214 aa18.03■□□□□ 0.48
CLSTN3-213ENST00000541953 KIAA0753Q2KHM9 967 aa18.03■□□□□ 0.48
CLSTN3-213ENST00000541953 HSDL1Q3SXM5 330 aa18.03■□□□□ 0.48
CLSTN3-213ENST00000541953 PDCD2LQ9BRP1 358 aa18.03■□□□□ 0.48
CLSTN3-213ENST00000541953 MTUS1Q9ULD2 1270 aa18.03■□□□□ 0.48
CLSTN3-213ENST00000541953 TELO2Q9Y4R8 837 aa18.03■□□□□ 0.48
CLSTN3-213ENST00000541953 MICAL3Q7RTP6 2002 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms