RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-210	ENST00000541488	NPLOC4	Q8TAT6	608 aa		6.32	□□□□□ -1.4
PRKDC-210	ENST00000541488	PLEKHO2	Q8TD55	490 aa		6.32	□□□□□ -1.4
PRKDC-210	ENST00000541488	PEX11G	Q96HA9	241 aa		6.32	□□□□□ -1.4
PRKDC-210	ENST00000541488	CHAMP1	Q96JM3	812 aa		6.32	□□□□□ -1.4
PRKDC-210	ENST00000541488	MMP19	Q99542	508 aa		6.32	□□□□□ -1.4
PRKDC-210	ENST00000541488	MENT	Q9BUN1	341 aa		6.32	□□□□□ -1.4
PRKDC-210	ENST00000541488	IGF2BP1	Q9NZI8	577 aa	Known RBP eCLIP	6.32	□□□□□ -1.4
PRKDC-210	ENST00000541488		K7ESM1	405 aa		6.31	□□□□□ -1.4
PRKDC-210	ENST00000541488	ARNTL	O00327	626 aa		6.31	□□□□□ -1.4
PRKDC-210	ENST00000541488	FFAR3	O14843	346 aa		6.31	□□□□□ -1.4
PRKDC-210	ENST00000541488	LCP1	P13796	627 aa		6.31	□□□□□ -1.4
PRKDC-210	ENST00000541488	BCL6	P41182	706 aa		6.31	□□□□□ -1.4
PRKDC-210	ENST00000541488	GRIA2	P42262	883 aa		6.31	□□□□□ -1.4
PRKDC-210	ENST00000541488	CEP68	Q76N32	757 aa		6.31	□□□□□ -1.4
PRKDC-210	ENST00000541488	PPIL6	Q8IXY8	311 aa		6.31	□□□□□ -1.4
PRKDC-210	ENST00000541488	TP53I13	Q8NBR0	393 aa	Predicted RBP	6.31	□□□□□ -1.4
PRKDC-210	ENST00000541488	NETO2	Q8NC67	525 aa		6.31	□□□□□ -1.4
PRKDC-210	ENST00000541488	SMARCC2	Q8TAQ2	1214 aa		6.31	□□□□□ -1.4
PRKDC-210	ENST00000541488	DIO2	Q92813	273 aa		6.31	□□□□□ -1.4
PRKDC-210	ENST00000541488	FBXL7	Q9UJT9	491 aa		6.31	□□□□□ -1.4
PRKDC-210	ENST00000541488	MEFV	O15553	781 aa	Predicted RBP	6.3	□□□□□ -1.4
PRKDC-210	ENST00000541488	HMGA2	P52926	109 aa		6.3	□□□□□ -1.4
PRKDC-210	ENST00000541488	ZNF827	Q17R98	1081 aa		6.3	□□□□□ -1.4
PRKDC-210	ENST00000541488	EEPD1	Q7L9B9	569 aa		6.3	□□□□□ -1.4
PRKDC-210	ENST00000541488	STK32C	Q86UX6	486 aa		6.3	□□□□□ -1.4
PRKDC-210	ENST00000541488	TMEM145	Q8NBT3	493 aa		6.3	□□□□□ -1.4
PRKDC-210	ENST00000541488	FNIP1	Q8TF40	1166 aa		6.3	□□□□□ -1.4
PRKDC-210	ENST00000541488	ZNF526	Q8TF50	670 aa	Predicted RBP	6.3	□□□□□ -1.4
PRKDC-210	ENST00000541488	DDX11	Q96FC9	970 aa		6.3	□□□□□ -1.4
PRKDC-210	ENST00000541488	TSPAN17	Q96FV3	270 aa		6.3	□□□□□ -1.4
PRKDC-210	ENST00000541488	NOX5	Q96PH1	765 aa		6.3	□□□□□ -1.4
PRKDC-210	ENST00000541488	PCDHA2	Q9Y5H9	948 aa		6.3	□□□□□ -1.4
PRKDC-210	ENST00000541488	HOXC12	P31275	282 aa		6.29	□□□□□ -1.4
PRKDC-210	ENST00000541488	RPL11	P62913	178 aa	Known RBP	6.29	□□□□□ -1.4
PRKDC-210	ENST00000541488	SMAD4	Q13485	552 aa	Known RBP	6.29	□□□□□ -1.4
PRKDC-210	ENST00000541488	SLC10A6	Q3KNW5	377 aa		6.29	□□□□□ -1.4
PRKDC-210	ENST00000541488	NLGN1	Q8N2Q7	840 aa		6.29	□□□□□ -1.4
PRKDC-210	ENST00000541488	LINC01356	Q8N9X3	169 aa		6.29	□□□□□ -1.4
PRKDC-210	ENST00000541488	TRMT2B	Q96GJ1	504 aa	Known RBP	6.29	□□□□□ -1.4
PRKDC-210	ENST00000541488	CNOT11	Q9UKZ1	510 aa	Known RBP	6.29	□□□□□ -1.4
PRKDC-210	ENST00000541488	TIMM13	Q9Y5L4	95 aa	Predicted RBP	6.29	□□□□□ -1.4
PRKDC-210	ENST00000541488	SGSM2	O43147	1006 aa		6.28	□□□□□ -1.4
PRKDC-210	ENST00000541488	GFRA1	P56159	465 aa		6.28	□□□□□ -1.4
PRKDC-210	ENST00000541488	PPP2R2A	P63151	447 aa		6.28	□□□□□ -1.4
PRKDC-210	ENST00000541488	VWA3B	Q502W6	1294 aa		6.28	□□□□□ -1.4
PRKDC-210	ENST00000541488	DENND5A	Q6IQ26	1287 aa		6.28	□□□□□ -1.4
PRKDC-210	ENST00000541488	NLRP10	Q86W26	655 aa		6.28	□□□□□ -1.4
PRKDC-210	ENST00000541488	DCP2	Q8IU60	420 aa	Known RBP	6.28	□□□□□ -1.4
PRKDC-210	ENST00000541488	FAM26E	Q8N5C1	309 aa		6.28	□□□□□ -1.4
PRKDC-210	ENST00000541488	KREMEN2	Q8NCW0	462 aa		6.28	□□□□□ -1.4
PRKDC-210	ENST00000541488	RCBTB1	Q8NDN9	531 aa		6.28	□□□□□ -1.4
PRKDC-210	ENST00000541488	SPATA25	Q9BR10	227 aa		6.28	□□□□□ -1.4
PRKDC-210	ENST00000541488	RNF38	Q9H0F5	515 aa		6.28	□□□□□ -1.4
PRKDC-210	ENST00000541488	AP5M1	Q9H0R1	490 aa		6.28	□□□□□ -1.4
PRKDC-210	ENST00000541488		A0A1W2PQU0	124 aa		6.27	□□□□□ -1.41
PRKDC-210	ENST00000541488		E9PSI1	815 aa		6.27	□□□□□ -1.41
PRKDC-210	ENST00000541488	AGRP	O00253	132 aa		6.27	□□□□□ -1.41
PRKDC-210	ENST00000541488	MYO1B	O43795	1136 aa		6.27	□□□□□ -1.41
PRKDC-210	ENST00000541488	SLURP1	P55000	103 aa		6.27	□□□□□ -1.41
PRKDC-210	ENST00000541488	SLC9A5	Q14940	896 aa		6.27	□□□□□ -1.41
PRKDC-210	ENST00000541488	DDR2	Q16832	855 aa		6.27	□□□□□ -1.41
PRKDC-210	ENST00000541488	MILR1	Q7Z6M3	343 aa		6.27	□□□□□ -1.41
PRKDC-210	ENST00000541488	ZBTB8A	Q96BR9	441 aa		6.27	□□□□□ -1.41
PRKDC-210	ENST00000541488	TMEM169	Q96HH4	297 aa		6.27	□□□□□ -1.41
PRKDC-210	ENST00000541488	IER2	Q9BTL4	223 aa		6.27	□□□□□ -1.41
PRKDC-210	ENST00000541488	SCAND2P	Q9GZW5	306 aa	Predicted RBP	6.27	□□□□□ -1.41
PRKDC-210	ENST00000541488	ZBTB7A	O95365	584 aa		6.26	□□□□□ -1.41
PRKDC-210	ENST00000541488	CP	P00450	1065 aa		6.26	□□□□□ -1.41
PRKDC-210	ENST00000541488	C8B	P07358	591 aa		6.26	□□□□□ -1.41
PRKDC-210	ENST00000541488	STAT5A	P42229	794 aa		6.26	□□□□□ -1.41
PRKDC-210	ENST00000541488	MAGEA10	P43363	369 aa	Predicted RBP	6.26	□□□□□ -1.41
PRKDC-210	ENST00000541488	KCNC1	P48547	511 aa		6.26	□□□□□ -1.41
PRKDC-210	ENST00000541488	KCNAB2	Q13303	367 aa		6.26	□□□□□ -1.41
PRKDC-210	ENST00000541488	E4F1	Q66K89	784 aa	Predicted RBP	6.26	□□□□□ -1.41
PRKDC-210	ENST00000541488	IQCE	Q6IPM2	695 aa		6.26	□□□□□ -1.41
PRKDC-210	ENST00000541488	CD300LD	Q6UXZ3	194 aa		6.26	□□□□□ -1.41
PRKDC-210	ENST00000541488	B3GNT8	Q7Z7M8	397 aa		6.26	□□□□□ -1.41
PRKDC-210	ENST00000541488	PPP1R1B	Q9UD71	204 aa	Predicted RBP	6.26	□□□□□ -1.41
PRKDC-210	ENST00000541488	CCDC85C	A6NKD9	419 aa		6.25	□□□□□ -1.41
PRKDC-210	ENST00000541488	LTBR	P36941	435 aa		6.25	□□□□□ -1.41
PRKDC-210	ENST00000541488	ADAM17	P78536	824 aa		6.25	□□□□□ -1.41
PRKDC-210	ENST00000541488	HTRA3	P83110	453 aa		6.25	□□□□□ -1.41
PRKDC-210	ENST00000541488	CACNB2	Q08289	660 aa	Predicted RBP	6.25	□□□□□ -1.41
PRKDC-210	ENST00000541488	ETV3L	Q6ZN32	361 aa		6.25	□□□□□ -1.41
PRKDC-210	ENST00000541488	USP53	Q70EK8	1073 aa		6.25	□□□□□ -1.41
PRKDC-210	ENST00000541488	SLC43A3	Q8NBI5	491 aa		6.25	□□□□□ -1.41
PRKDC-210	ENST00000541488	CLDND1	Q9NY35	253 aa		6.25	□□□□□ -1.41
PRKDC-210	ENST00000541488	COA3	Q9Y2R0	106 aa	Predicted RBP	6.25	□□□□□ -1.41
PRKDC-210	ENST00000541488	BLACE	A4D250	179 aa		6.24	□□□□□ -1.41
PRKDC-210	ENST00000541488	KLF4	O43474	513 aa		6.24	□□□□□ -1.41
PRKDC-210	ENST00000541488	SCG5	P05408	212 aa		6.24	□□□□□ -1.41
PRKDC-210	ENST00000541488	CYP2C8	P10632	490 aa		6.24	□□□□□ -1.41
PRKDC-210	ENST00000541488	NAALADL2	Q58DX5	795 aa		6.24	□□□□□ -1.41
PRKDC-210	ENST00000541488	NT5DC1	Q5TFE4	455 aa		6.24	□□□□□ -1.41
PRKDC-210	ENST00000541488	LIPI	Q6XZB0	460 aa		6.24	□□□□□ -1.41
PRKDC-210	ENST00000541488	SAPCD2	Q86UD0	394 aa		6.24	□□□□□ -1.41
PRKDC-210	ENST00000541488	SEC14L1	Q92503	715 aa		6.24	□□□□□ -1.41
PRKDC-210	ENST00000541488	C1orf159	Q96HA4	380 aa		6.24	□□□□□ -1.41
PRKDC-210	ENST00000541488	GORASP1	Q9BQQ3	440 aa		6.24	□□□□□ -1.41
PRKDC-210	ENST00000541488	TRIM55	Q9BYV6	548 aa		6.24	□□□□□ -1.41

Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms