RNA–Protein interactions for RNA: ENST00000541351.3

YBX3-211, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-211ENST00000541351 SSH1Q8WYL5 1049 aa11.3□□□□□ -0.6
YBX3-211ENST00000541351 APBB2Q92870 758 aa11.3□□□□□ -0.6
YBX3-211ENST00000541351 RTP3Q9BQQ7 232 aa11.3□□□□□ -0.6
YBX3-211ENST00000541351 ZNF287Q9HBT7 754 aa11.3□□□□□ -0.6
YBX3-211ENST00000541351 CYP39A1Q9NYL5 469 aa11.3□□□□□ -0.6
YBX3-211ENST00000541351 GTF2IRD1Q9UHL9 959 aa11.3□□□□□ -0.6
YBX3-211ENST00000541351 PCDHGC5Q9Y5F6 944 aa11.3□□□□□ -0.6
YBX3-211ENST00000541351 TRIP12Q14669 1992 aaPredicted RBP11.3□□□□□ -0.6
YBX3-211ENST00000541351 MICAL3Q7RTP6 2002 aa11.3□□□□□ -0.6
YBX3-211ENST00000541351 RALGAPA2Q2PPJ7 1873 aa11.29□□□□□ -0.6
YBX3-211ENST00000541351 RSPH10B2B2RC85 870 aa11.29□□□□□ -0.6
YBX3-211ENST00000541351 E9PSI1 815 aa11.29□□□□□ -0.6
YBX3-211ENST00000541351 GRM6O15303 877 aa11.29□□□□□ -0.6
YBX3-211ENST00000541351 PDGFBP01127 241 aaPredicted RBP11.29□□□□□ -0.6
YBX3-211ENST00000541351 RSPH10BP0C881 870 aa11.29□□□□□ -0.6
YBX3-211ENST00000541351 PDE4DQ08499 809 aa11.29□□□□□ -0.6
YBX3-211ENST00000541351 ANGPT1Q15389 498 aa11.29□□□□□ -0.6
YBX3-211ENST00000541351 SLC9C2Q5TAH2 1124 aa11.29□□□□□ -0.6
YBX3-211ENST00000541351 C12orf60Q5U649 245 aa11.29□□□□□ -0.6
YBX3-211ENST00000541351 NSMFQ6X4W1 530 aa11.29□□□□□ -0.6
YBX3-211ENST00000541351 KREMEN2Q8NCW0 462 aa11.29□□□□□ -0.6
YBX3-211ENST00000541351 P2RX5Q93086 422 aa11.29□□□□□ -0.6
YBX3-211ENST00000541351 NEK1Q96PY6 1258 aa11.29□□□□□ -0.6
YBX3-211ENST00000541351 CDCA3Q99618 268 aaPredicted RBP11.29□□□□□ -0.6
YBX3-211ENST00000541351 MEIS3Q99687 375 aa11.29□□□□□ -0.6
YBX3-211ENST00000541351 MYO7AQ13402 2215 aa11.28□□□□□ -0.6
YBX3-211ENST00000541351 LINC01565O15544 149 aa11.28□□□□□ -0.6
YBX3-211ENST00000541351 TXNP10599 105 aaKnown RBP11.28□□□□□ -0.6
YBX3-211ENST00000541351 BMP3P12645 472 aa11.28□□□□□ -0.6
YBX3-211ENST00000541351 PTGS1P23219 599 aa11.28□□□□□ -0.6
YBX3-211ENST00000541351 ALDH5A1P51649 535 aaPredicted RBP11.28□□□□□ -0.6
YBX3-211ENST00000541351 DGKDQ16760 1214 aa11.28□□□□□ -0.6
YBX3-211ENST00000541351 PLEKHG4Q58EX7 1191 aa11.28□□□□□ -0.6
YBX3-211ENST00000541351 ZNF618Q5T7W0 954 aa11.28□□□□□ -0.6
YBX3-211ENST00000541351 DHX37Q8IY37 1157 aaKnown RBP11.28□□□□□ -0.6
YBX3-211ENST00000541351 DHX38Q92620 1227 aaKnown RBP11.28□□□□□ -0.6
YBX3-211ENST00000541351 CLP1Q92989 425 aaKnown RBP11.28□□□□□ -0.6
YBX3-211ENST00000541351 BORCS6Q96GS4 357 aa11.28□□□□□ -0.6
YBX3-211ENST00000541351 MKNK2Q9HBH9 465 aa11.28□□□□□ -0.6
YBX3-211ENST00000541351 CLEC1BQ9P126 229 aa11.28□□□□□ -0.6
YBX3-211ENST00000541351 PNMA2Q9UL42 364 aa11.28□□□□□ -0.6
YBX3-211ENST00000541351 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.28□□□□□ -0.6
YBX3-211ENST00000541351 ZNF292O60281 2723 aa11.28□□□□□ -0.6
YBX3-211ENST00000541351 CHD6Q8TD26 2715 aa11.27□□□□□ -0.61
YBX3-211ENST00000541351 CAND2O75155 1236 aa11.27□□□□□ -0.61
YBX3-211ENST00000541351 GNAI2P04899 355 aa11.27□□□□□ -0.61
YBX3-211ENST00000541351 CYP2D6P10635 497 aa11.27□□□□□ -0.61
YBX3-211ENST00000541351 GTF2F1P35269 517 aaKnown RBP eCLIP11.27□□□□□ -0.61
YBX3-211ENST00000541351 RSPO4Q2I0M5 234 aaPredicted RBP11.27□□□□□ -0.61
YBX3-211ENST00000541351 PPP4R3BQ5MIZ7 849 aa11.27□□□□□ -0.61
YBX3-211ENST00000541351 CCDC105Q8IYK2 499 aa11.27□□□□□ -0.61
YBX3-211ENST00000541351 GMCL1P1Q8NEA9 526 aa11.27□□□□□ -0.61
YBX3-211ENST00000541351 CYP2W1Q8TAV3 490 aa11.27□□□□□ -0.61
YBX3-211ENST00000541351 SUSD6Q92537 303 aa11.27□□□□□ -0.61
YBX3-211ENST00000541351 SECISBP2LQ93073 1101 aaKnown RBP11.27□□□□□ -0.61
YBX3-211ENST00000541351 CLIP2Q9UDT6 1046 aa11.27□□□□□ -0.61
YBX3-211ENST00000541351 ADGRA3Q8IWK6 1321 aa11.27□□□□□ -0.61
YBX3-211ENST00000541351 FAM208BQ5VWN6 2430 aa11.27□□□□□ -0.61
YBX3-211ENST00000541351 PRR5-ARHGAP8B1AHC4 643 aa11.26□□□□□ -0.61
YBX3-211ENST00000541351 TMEM232C9JQI7 657 aa11.26□□□□□ -0.61
YBX3-211ENST00000541351 GH1P01241 217 aa11.26□□□□□ -0.61
YBX3-211ENST00000541351 PDE6AP16499 860 aa11.26□□□□□ -0.61
YBX3-211ENST00000541351 THPOP40225 353 aa11.26□□□□□ -0.61
YBX3-211ENST00000541351 NRIP1P48552 1158 aa11.26□□□□□ -0.61
YBX3-211ENST00000541351 ARHGAP8P85298 464 aa11.26□□□□□ -0.61
YBX3-211ENST00000541351 BTG3Q14201 252 aaPredicted RBP11.26□□□□□ -0.61
YBX3-211ENST00000541351 TMEM63BQ5T3F8 832 aa11.26□□□□□ -0.61
YBX3-211ENST00000541351 TLE6Q9H808 572 aa11.26□□□□□ -0.61
YBX3-211ENST00000541351 ARPP21Q9UBL0 812 aaPredicted RBP11.26□□□□□ -0.61
YBX3-211ENST00000541351 CDV3Q9UKY7 258 aaKnown RBP11.26□□□□□ -0.61
YBX3-211ENST00000541351 CCPG1Q9ULG6 757 aa11.26□□□□□ -0.61
YBX3-211ENST00000541351 BARX2Q9UMQ3 279 aaPredicted RBP11.26□□□□□ -0.61
YBX3-211ENST00000541351 PLAGL2Q9UPG8 496 aa11.26□□□□□ -0.61
YBX3-211ENST00000541351 NLRC5Q86WI3 1866 aa11.25□□□□□ -0.61
YBX3-211ENST00000541351 ZFHX4Q86UP3 3567 aa11.25□□□□□ -0.61
YBX3-211ENST00000541351 CEP250Q9BV73 2442 aa11.25□□□□□ -0.61
YBX3-211ENST00000541351 PLA2G6O60733 806 aa11.25□□□□□ -0.61
YBX3-211ENST00000541351 TTLL1O95922 423 aa11.25□□□□□ -0.61
YBX3-211ENST00000541351 MMP3P08254 477 aa11.25□□□□□ -0.61
YBX3-211ENST00000541351 AOC1P19801 751 aa11.25□□□□□ -0.61
YBX3-211ENST00000541351 TCTN1Q2MV58 587 aa11.25□□□□□ -0.61
YBX3-211ENST00000541351 STAG1Q8WVM7 1258 aa11.25□□□□□ -0.61
YBX3-211ENST00000541351 MKL1Q969V6 931 aa11.25□□□□□ -0.61
YBX3-211ENST00000541351 NECTIN4Q96NY8 510 aa11.25□□□□□ -0.61
YBX3-211ENST00000541351 CTAGE1Q96RT6 745 aa11.25□□□□□ -0.61
YBX3-211ENST00000541351 SH2B1Q9NRF2 756 aaPredicted RBP11.25□□□□□ -0.61
YBX3-211ENST00000541351 HDAC6Q9UBN7 1215 aa11.25□□□□□ -0.61
YBX3-211ENST00000541351 DBNLQ9UJU6 430 aaKnown RBP11.25□□□□□ -0.61
YBX3-211ENST00000541351 ZNF532Q9HCE3 1301 aa11.25□□□□□ -0.61
YBX3-211ENST00000541351 VPS13AQ96RL7 3174 aa11.24□□□□□ -0.61
YBX3-211ENST00000541351 PTPDC1A2A3K4 754 aa11.24□□□□□ -0.61
YBX3-211ENST00000541351 CSPG5O95196 566 aa11.24□□□□□ -0.61
YBX3-211ENST00000541351 HOXB8P17481 243 aaPredicted RBP11.24□□□□□ -0.61
YBX3-211ENST00000541351 SLC1A4P43007 532 aa11.24□□□□□ -0.61
YBX3-211ENST00000541351 PSEN2P49810 448 aa11.24□□□□□ -0.61
YBX3-211ENST00000541351 EVX2Q03828 476 aa11.24□□□□□ -0.61
YBX3-211ENST00000541351 SLFN13Q68D06 897 aa11.24□□□□□ -0.61
YBX3-211ENST00000541351 PDE12Q6L8Q7 609 aaKnown RBP11.24□□□□□ -0.61
YBX3-211ENST00000541351 LCORLQ8N3X6 602 aa11.24□□□□□ -0.61
YBX3-211ENST00000541351 DTWD2Q8NBA8 298 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms