RNA–Protein interactions for RNA: ENST00000540998.5

CDC42SE1-207, Transcript of CDC42 small effector 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CDC42SE1, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1-207ENST00000540998 SHOX2O60902 331 aaPredicted RBP11.48□□□□□ -0.57
CDC42SE1-207ENST00000540998 HEXIM1O94992 359 aaKnown RBP11.48□□□□□ -0.57
CDC42SE1-207ENST00000540998 HPDP32754 393 aaPredicted RBP11.48□□□□□ -0.57
CDC42SE1-207ENST00000540998 GRM4Q14833 912 aa11.48□□□□□ -0.57
CDC42SE1-207ENST00000540998 C12orf60Q5U649 245 aa11.48□□□□□ -0.57
CDC42SE1-207ENST00000540998 FBXO33Q7Z6M2 555 aa11.48□□□□□ -0.57
CDC42SE1-207ENST00000540998 PPM1EQ8WY54 764 aa11.48□□□□□ -0.57
CDC42SE1-207ENST00000540998 PNMA5Q96PV4 448 aa11.48□□□□□ -0.57
CDC42SE1-207ENST00000540998 BSDC1Q9NW68 430 aaPredicted RBP11.48□□□□□ -0.57
CDC42SE1-207ENST00000540998 MYH1P12882 1939 aa11.48□□□□□ -0.57
CDC42SE1-207ENST00000540998 ANO9A1A5B4 782 aa11.47□□□□□ -0.57
CDC42SE1-207ENST00000540998 USO1O60763 962 aaKnown RBP11.47□□□□□ -0.57
CDC42SE1-207ENST00000540998 KCNMA1Q12791 1236 aa11.47□□□□□ -0.57
CDC42SE1-207ENST00000540998 NNTQ13423 1086 aa11.47□□□□□ -0.57
CDC42SE1-207ENST00000540998 UBE2SQ16763 222 aa11.47□□□□□ -0.57
CDC42SE1-207ENST00000540998 ERGIC2Q96RQ1 377 aa11.47□□□□□ -0.57
CDC42SE1-207ENST00000540998 BCAS3Q9H6U6 928 aa11.47□□□□□ -0.57
CDC42SE1-207ENST00000540998 LRRC4CQ9HCJ2 640 aa11.47□□□□□ -0.57
CDC42SE1-207ENST00000540998 DCCP43146 1447 aa11.47□□□□□ -0.57
CDC42SE1-207ENST00000540998 EBAG9O00559 213 aa11.47□□□□□ -0.57
CDC42SE1-207ENST00000540998 NDUFAB1O14561 156 aa11.47□□□□□ -0.57
CDC42SE1-207ENST00000540998 TUBBP07437 444 aa11.47□□□□□ -0.57
CDC42SE1-207ENST00000540998 KLRC1P26715 233 aa11.47□□□□□ -0.57
CDC42SE1-207ENST00000540998 POLR2FP61218 127 aaKnown RBP11.47□□□□□ -0.57
CDC42SE1-207ENST00000540998 TUBB4BP68371 445 aa11.47□□□□□ -0.57
CDC42SE1-207ENST00000540998 PARP10Q53GL7 1025 aa11.47□□□□□ -0.57
CDC42SE1-207ENST00000540998 KCNV1Q6PIU1 500 aa11.47□□□□□ -0.57
CDC42SE1-207ENST00000540998 ZSCAN29Q8IWY8 852 aaPredicted RBP11.47□□□□□ -0.57
CDC42SE1-207ENST00000540998 MMGT1Q8N4V1 131 aa11.47□□□□□ -0.57
CDC42SE1-207ENST00000540998 RUFY1Q96T51 708 aa11.47□□□□□ -0.57
CDC42SE1-207ENST00000540998 ARPP21Q9UBL0 812 aaPredicted RBP11.47□□□□□ -0.57
CDC42SE1-207ENST00000540998 HYOU1Q9Y4L1 999 aa11.47□□□□□ -0.57
CDC42SE1-207ENST00000540998 USP17L5A8MUK1 530 aa11.47□□□□□ -0.57
CDC42SE1-207ENST00000540998 EDIL3O43854 480 aa11.47□□□□□ -0.57
CDC42SE1-207ENST00000540998 ERLIN2O94905 339 aa11.47□□□□□ -0.57
CDC42SE1-207ENST00000540998 ACTN1P12814 892 aa11.47□□□□□ -0.57
CDC42SE1-207ENST00000540998 PPFIA1Q13136 1202 aa11.47□□□□□ -0.57
CDC42SE1-207ENST00000540998 NONOQ15233 471 aaKnown RBP eCLIP11.47□□□□□ -0.57
CDC42SE1-207ENST00000540998 AMIGO3Q86WK7 504 aa11.47□□□□□ -0.57
CDC42SE1-207ENST00000540998 PYM1Q9BRP8 204 aaKnown RBP11.47□□□□□ -0.57
CDC42SE1-207ENST00000540998 UTRNP46939 3433 aa11.46□□□□□ -0.57
CDC42SE1-207ENST00000540998 BICDL2A1A5D9 508 aa11.46□□□□□ -0.57
CDC42SE1-207ENST00000540998 HGSNATQ68CP4 663 aa11.46□□□□□ -0.57
CDC42SE1-207ENST00000540998 DHX37Q8IY37 1157 aaKnown RBP11.46□□□□□ -0.57
CDC42SE1-207ENST00000540998 ZNF444Q8N0Y2 327 aaPredicted RBP11.46□□□□□ -0.57
CDC42SE1-207ENST00000540998 LRRC47Q8N1G4 583 aaKnown RBP11.46□□□□□ -0.57
CDC42SE1-207ENST00000540998 CASKIN2Q8WXE0 1202 aa11.46□□□□□ -0.57
CDC42SE1-207ENST00000540998 TBC1D5Q92609 795 aa11.46□□□□□ -0.57
CDC42SE1-207ENST00000540998 NUP58Q9BVL2 599 aa11.46□□□□□ -0.57
CDC42SE1-207ENST00000540998 ZHX3Q9H4I2 956 aa11.46□□□□□ -0.57
CDC42SE1-207ENST00000540998 ATP8A2Q9NTI2 1148 aa11.46□□□□□ -0.57
CDC42SE1-207ENST00000540998 ADAMTS1Q9UHI8 967 aa11.46□□□□□ -0.57
CDC42SE1-207ENST00000540998 PHLPP1O60346 1717 aa11.46□□□□□ -0.58
CDC42SE1-207ENST00000540998 RASA1P20936 1047 aa11.46□□□□□ -0.58
CDC42SE1-207ENST00000540998 MCM3P25205 808 aa11.46□□□□□ -0.58
CDC42SE1-207ENST00000540998 RPS8P62241 208 aaKnown RBP11.46□□□□□ -0.58
CDC42SE1-207ENST00000540998 CENPPQ6IPU0 288 aa11.46□□□□□ -0.58
CDC42SE1-207ENST00000540998 LRRC55Q6ZSA7 311 aa11.46□□□□□ -0.58
CDC42SE1-207ENST00000540998 NEK8Q86SG6 692 aa11.46□□□□□ -0.58
CDC42SE1-207ENST00000540998 FNBP4Q8N3X1 1017 aaPredicted RBP11.46□□□□□ -0.58
CDC42SE1-207ENST00000540998 GPATCH11Q8N954 259 aa11.46□□□□□ -0.58
CDC42SE1-207ENST00000540998 FAM133AQ8N9E0 248 aa11.46□□□□□ -0.58
CDC42SE1-207ENST00000540998 MARCH10Q8NA82 808 aaPredicted RBP11.46□□□□□ -0.58
CDC42SE1-207ENST00000540998 DDX12PQ92771 950 aa11.46□□□□□ -0.58
CDC42SE1-207ENST00000540998 C7orf25Q9BPX7 421 aa11.46□□□□□ -0.58
CDC42SE1-207ENST00000540998 LSM14BQ9BX40 385 aaKnown RBP11.46□□□□□ -0.58
CDC42SE1-207ENST00000540998 EFCC1Q9HA90 598 aa11.46□□□□□ -0.58
CDC42SE1-207ENST00000540998 DLEC1Q9Y238 1755 aa11.45□□□□□ -0.58
CDC42SE1-207ENST00000540998 A0A087X0T9 212 aa11.45□□□□□ -0.58
CDC42SE1-207ENST00000540998 HSF2BPO75031 334 aa11.45□□□□□ -0.58
CDC42SE1-207ENST00000540998 FAM228BP0C875 321 aa11.45□□□□□ -0.58
CDC42SE1-207ENST00000540998 TNNI2P48788 182 aa11.45□□□□□ -0.58
CDC42SE1-207ENST00000540998 RAPGEF1Q13905 1077 aa11.45□□□□□ -0.58
CDC42SE1-207ENST00000540998 CCDC70Q6NSX1 233 aa11.45□□□□□ -0.58
CDC42SE1-207ENST00000540998 AMOTL1Q8IY63 956 aa11.45□□□□□ -0.58
CDC42SE1-207ENST00000540998 EFCAB13Q8IY85 973 aa11.45□□□□□ -0.58
CDC42SE1-207ENST00000540998 PIK3R5Q8WYR1 880 aa11.45□□□□□ -0.58
CDC42SE1-207ENST00000540998 RPGRIP1Q96KN7 1286 aa11.45□□□□□ -0.58
CDC42SE1-207ENST00000540998 AP1M1Q9BXS5 423 aa11.45□□□□□ -0.58
CDC42SE1-207ENST00000540998 XIRP1Q702N8 1843 aaKnown RBP11.45□□□□□ -0.58
CDC42SE1-207ENST00000540998 TRAF5O00463 557 aa11.45□□□□□ -0.58
CDC42SE1-207ENST00000540998 NOL4O94818 638 aa11.45□□□□□ -0.58
CDC42SE1-207ENST00000540998 NFIXQ14938 502 aa11.45□□□□□ -0.58
CDC42SE1-207ENST00000540998 PDXDC1Q6P996 788 aa11.45□□□□□ -0.58
CDC42SE1-207ENST00000540998 SV2BQ7L1I2 683 aa11.45□□□□□ -0.58
CDC42SE1-207ENST00000540998 LINC00116Q8NCU8 138 aa11.45□□□□□ -0.58
CDC42SE1-207ENST00000540998 SNX29Q8TEQ0 813 aa11.45□□□□□ -0.58
CDC42SE1-207ENST00000540998 ALS2CR12Q96Q35 445 aa11.45□□□□□ -0.58
CDC42SE1-207ENST00000540998 SH3GL2Q99962 352 aa11.45□□□□□ -0.58
CDC42SE1-207ENST00000540998 IKZF4Q9H2S9 585 aa11.45□□□□□ -0.58
CDC42SE1-207ENST00000540998 CAPN7Q9Y6W3 813 aa11.45□□□□□ -0.58
CDC42SE1-207ENST00000540998 CASZ1Q86V15 1759 aa11.45□□□□□ -0.58
CDC42SE1-207ENST00000540998 PALM3A6NDB9 673 aaPredicted RBP11.44□□□□□ -0.58
CDC42SE1-207ENST00000540998 RAD51CO43502 376 aa11.44□□□□□ -0.58
CDC42SE1-207ENST00000540998 PAFAH1B1P43034 410 aa11.44□□□□□ -0.58
CDC42SE1-207ENST00000540998 EPHB4P54760 987 aa11.44□□□□□ -0.58
CDC42SE1-207ENST00000540998 HDLBPQ00341 1268 aaKnown RBP11.44□□□□□ -0.58
CDC42SE1-207ENST00000540998 FAM182BQ5T319 152 aa11.44□□□□□ -0.58
CDC42SE1-207ENST00000540998 CNNM4Q6P4Q7 775 aa11.44□□□□□ -0.58
CDC42SE1-207ENST00000540998 MAATS1Q7Z4T9 603 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms