RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 CCDC39Q9UFE4 941 aa13.81□□□□□ -0.2
AP003559.1-201ENST00000540906 GLTPD2A6NH11 291 aa13.8□□□□□ -0.2
AP003559.1-201ENST00000540906 STX17P56962 302 aa13.8□□□□□ -0.2
AP003559.1-201ENST00000540906 MYL5Q02045 173 aa13.8□□□□□ -0.2
AP003559.1-201ENST00000540906 PCDHA12Q9UN75 941 aa13.8□□□□□ -0.2
AP003559.1-201ENST00000540906 CCDC144BQ3MJ40 725 aa13.8□□□□□ -0.2
AP003559.1-201ENST00000540906 KMT5BQ4FZB7 885 aa13.8□□□□□ -0.2
AP003559.1-201ENST00000540906 TREML2Q5T2D2 321 aa13.8□□□□□ -0.2
AP003559.1-201ENST00000540906 KLHL10Q6JEL2 608 aa13.8□□□□□ -0.2
AP003559.1-201ENST00000540906 MLKLQ8NB16 471 aa13.8□□□□□ -0.2
AP003559.1-201ENST00000540906 ELP3Q9H9T3 547 aa13.8□□□□□ -0.2
AP003559.1-201ENST00000540906 RTN4Q9NQC3 1192 aaKnown RBP13.8□□□□□ -0.2
AP003559.1-201ENST00000540906 VAV3Q9UKW4 847 aa13.8□□□□□ -0.2
AP003559.1-201ENST00000540906 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.8□□□□□ -0.2
AP003559.1-201ENST00000540906 POTEB3A0JP26 581 aa13.79□□□□□ -0.2
AP003559.1-201ENST00000540906 MYMKA6NI61 221 aa13.79□□□□□ -0.2
AP003559.1-201ENST00000540906 SMTNL1A8MU46 457 aa13.79□□□□□ -0.2
AP003559.1-201ENST00000540906 MARCH6O60337 910 aa13.79□□□□□ -0.2
AP003559.1-201ENST00000540906 MED24O75448 989 aa13.79□□□□□ -0.2
AP003559.1-201ENST00000540906 PTMAP06454 111 aaKnown RBP13.79□□□□□ -0.2
AP003559.1-201ENST00000540906 DSG3P32926 999 aa13.79□□□□□ -0.2
AP003559.1-201ENST00000540906 PTPN21Q16825 1174 aa13.79□□□□□ -0.2
AP003559.1-201ENST00000540906 EAPPQ56P03 285 aaPredicted RBP13.79□□□□□ -0.2
AP003559.1-201ENST00000540906 MCTP2Q6DN12 878 aa13.79□□□□□ -0.2
AP003559.1-201ENST00000540906 DPY19L2Q6NUT2 758 aa13.79□□□□□ -0.2
AP003559.1-201ENST00000540906 POTEBQ6S5H4 581 aa13.79□□□□□ -0.2
AP003559.1-201ENST00000540906 CATSPERGQ6ZRH7 1159 aa13.79□□□□□ -0.2
AP003559.1-201ENST00000540906 USP50Q70EL3 339 aaPredicted RBP13.79□□□□□ -0.2
AP003559.1-201ENST00000540906 SYTL5Q8TDW5 730 aaPredicted RBP13.79□□□□□ -0.2
AP003559.1-201ENST00000540906 HPS3Q969F9 1004 aa13.79□□□□□ -0.2
AP003559.1-201ENST00000540906 NAP1L4Q99733 375 aaKnown RBP13.79□□□□□ -0.2
AP003559.1-201ENST00000540906 TRIM9Q9C026 710 aa13.79□□□□□ -0.2
AP003559.1-201ENST00000540906 TAF1DQ9H5J8 278 aaPredicted RBP13.79□□□□□ -0.2
AP003559.1-201ENST00000540906 IFNKQ9P0W0 207 aa13.79□□□□□ -0.2
AP003559.1-201ENST00000540906 RPTORQ8N122 1335 aa13.79□□□□□ -0.2
AP003559.1-201ENST00000540906 ESPNB1AK53 854 aa13.78□□□□□ -0.2
AP003559.1-201ENST00000540906 C19orf81C9J6K1 198 aa13.78□□□□□ -0.2
AP003559.1-201ENST00000540906 EML1O00423 815 aa13.78□□□□□ -0.2
AP003559.1-201ENST00000540906 ARP10275 920 aa13.78□□□□□ -0.2
AP003559.1-201ENST00000540906 ZNF76P36508 570 aa13.78□□□□□ -0.2
AP003559.1-201ENST00000540906 GHRHRQ02643 423 aa13.78□□□□□ -0.2
AP003559.1-201ENST00000540906 TMEM132BQ14DG7 1078 aa13.78□□□□□ -0.2
AP003559.1-201ENST00000540906 SH3D19Q5HYK7 790 aa13.78□□□□□ -0.2
AP003559.1-201ENST00000540906 RAD54LQ92698 747 aa13.78□□□□□ -0.2
AP003559.1-201ENST00000540906 CALML4Q96GE6 196 aa13.78□□□□□ -0.2
AP003559.1-201ENST00000540906 CCDC34Q96HJ3 373 aa13.78□□□□□ -0.2
AP003559.1-201ENST00000540906 C7orf25Q9BPX7 421 aa13.78□□□□□ -0.2
AP003559.1-201ENST00000540906 XPO4Q9C0E2 1151 aaKnown RBP13.78□□□□□ -0.2
AP003559.1-201ENST00000540906 KCNF1Q9H3M0 494 aa13.78□□□□□ -0.2
AP003559.1-201ENST00000540906 SAMSN1Q9NSI8 373 aaKnown RBP13.78□□□□□ -0.2
AP003559.1-201ENST00000540906 ZNF214Q9UL59 606 aaPredicted RBP13.78□□□□□ -0.2
AP003559.1-201ENST00000540906 ADAMTS5Q9UNA0 930 aa13.78□□□□□ -0.2
AP003559.1-201ENST00000540906 CTNND2Q9UQB3 1225 aa13.78□□□□□ -0.2
AP003559.1-201ENST00000540906 MAPK8IP1Q9UQF2 711 aa13.78□□□□□ -0.2
AP003559.1-201ENST00000540906 SPDYE16A6NNV3 312 aaPredicted RBP13.78□□□□□ -0.2
AP003559.1-201ENST00000540906 E9PMD0 336 aa13.78□□□□□ -0.2
AP003559.1-201ENST00000540906 ZBED4O75132 1171 aa13.78□□□□□ -0.2
AP003559.1-201ENST00000540906 CCT6AP40227 531 aaKnown RBP13.78□□□□□ -0.2
AP003559.1-201ENST00000540906 FANCCQ00597 558 aa13.78□□□□□ -0.2
AP003559.1-201ENST00000540906 TRAF1Q13077 416 aa13.78□□□□□ -0.2
AP003559.1-201ENST00000540906 HYIQ5T013 277 aa13.78□□□□□ -0.2
AP003559.1-201ENST00000540906 KRT79Q5XKE5 535 aa13.78□□□□□ -0.2
AP003559.1-201ENST00000540906 NCAPH2Q6IBW4 605 aa13.78□□□□□ -0.2
AP003559.1-201ENST00000540906 ENOX1Q8TC92 643 aaKnown RBP13.78□□□□□ -0.2
AP003559.1-201ENST00000540906 TRERF1Q96PN7 1200 aa13.78□□□□□ -0.2
AP003559.1-201ENST00000540906 TAAR1Q96RJ0 339 aa13.78□□□□□ -0.2
AP003559.1-201ENST00000540906 CUEDC2Q9H467 287 aa13.78□□□□□ -0.2
AP003559.1-201ENST00000540906 NFE2L3Q9Y4A8 694 aa13.78□□□□□ -0.2
AP003559.1-201ENST00000540906 LOC285556D6RIA3 1793 aa13.78□□□□□ -0.2
AP003559.1-201ENST00000540906 SCN4AP35499 1836 aa13.77□□□□□ -0.2
AP003559.1-201ENST00000540906 LCTP09848 1927 aa13.77□□□□□ -0.2
AP003559.1-201ENST00000540906 POTEFA5A3E0 1075 aa13.77□□□□□ -0.21
AP003559.1-201ENST00000540906 SPATA31C1P0DKV0 1188 aa13.77□□□□□ -0.21
AP003559.1-201ENST00000540906 ZNF18P17022 549 aa13.77□□□□□ -0.21
AP003559.1-201ENST00000540906 ITGB5P18084 799 aa13.77□□□□□ -0.21
AP003559.1-201ENST00000540906 PTGS1P23219 599 aa13.77□□□□□ -0.21
AP003559.1-201ENST00000540906 RPS6P62753 249 aaKnown RBP13.77□□□□□ -0.21
AP003559.1-201ENST00000540906 ARID5BQ14865 1188 aa13.77□□□□□ -0.21
AP003559.1-201ENST00000540906 HS1BP3Q53T59 392 aa13.77□□□□□ -0.21
AP003559.1-201ENST00000540906 ZNF658Q5TYW1 1059 aaPredicted RBP13.77□□□□□ -0.21
AP003559.1-201ENST00000540906 POTEGQ6S5H5 508 aa13.77□□□□□ -0.21
AP003559.1-201ENST00000540906 LARP4BQ92615 738 aaKnown RBP13.77□□□□□ -0.21
AP003559.1-201ENST00000540906 MRFAP1L1Q96HT8 127 aa13.77□□□□□ -0.21
AP003559.1-201ENST00000540906 NAP1L5Q96NT1 182 aaPredicted RBP13.77□□□□□ -0.21
AP003559.1-201ENST00000540906 RNF146Q9NTX7 359 aa13.77□□□□□ -0.21
AP003559.1-201ENST00000540906 INTS13Q9NVM9 706 aa13.77□□□□□ -0.21
AP003559.1-201ENST00000540906 KIAA1024Q9UPX6 916 aa13.77□□□□□ -0.21
AP003559.1-201ENST00000540906 IRF6O14896 467 aa13.76□□□□□ -0.21
AP003559.1-201ENST00000540906 TBX3O15119 743 aa13.76□□□□□ -0.21
AP003559.1-201ENST00000540906 FCER1AP12319 257 aa13.76□□□□□ -0.21
AP003559.1-201ENST00000540906 PRCPP42785 496 aa13.76□□□□□ -0.21
AP003559.1-201ENST00000540906 PSMC6P62333 389 aa13.76□□□□□ -0.21
AP003559.1-201ENST00000540906 COG2Q14746 738 aa13.76□□□□□ -0.21
AP003559.1-201ENST00000540906 SNRNP48Q6IEG0 339 aaKnown RBP13.76□□□□□ -0.21
AP003559.1-201ENST00000540906 ZSCAN30Q86W11 494 aa13.76□□□□□ -0.21
AP003559.1-201ENST00000540906 SLFN12Q8IYM2 578 aa13.76□□□□□ -0.21
AP003559.1-201ENST00000540906 OTUD5Q96G74 571 aa13.76□□□□□ -0.21
AP003559.1-201ENST00000540906 RAB34Q9BZG1 259 aa13.76□□□□□ -0.21
AP003559.1-201ENST00000540906 MAGEF1Q9HAY2 307 aa13.76□□□□□ -0.21
AP003559.1-201ENST00000540906 TMOD4Q9NZQ9 345 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms