RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 FBXO11Q86XK2 927 aa15.4■□□□□ 0.06
RTN3-210ENST00000540798 ZBED3Q96IU2 234 aaPredicted RBP15.4■□□□□ 0.06
RTN3-210ENST00000540798 CDK5RAP3Q96JB5 506 aa15.4■□□□□ 0.06
RTN3-210ENST00000540798 TMOD2Q9NZR1 351 aa15.4■□□□□ 0.06
RTN3-210ENST00000540798 PCDHA12Q9UN75 941 aa15.4■□□□□ 0.06
RTN3-210ENST00000540798 KDM3AQ9Y4C1 1321 aa15.4■□□□□ 0.06
RTN3-210ENST00000540798 TBC1D12O60347 775 aa15.4■□□□□ 0.06
RTN3-210ENST00000540798 ETNPPLQ8TBG4 499 aa15.4■□□□□ 0.06
RTN3-210ENST00000540798 UPF1Q92900 1129 aaKnown RBP eCLIP15.4■□□□□ 0.06
RTN3-210ENST00000540798 ERO1AQ96HE7 468 aa15.4■□□□□ 0.06
RTN3-210ENST00000540798 SEMA6BQ9H3T3 888 aa15.4■□□□□ 0.06
RTN3-210ENST00000540798 PGAP2Q9UHJ9 254 aa15.4■□□□□ 0.06
RTN3-210ENST00000540798 HDAC9Q9UKV0 1011 aa15.4■□□□□ 0.06
RTN3-210ENST00000540798 ZNF215Q9UL58 517 aaPredicted RBP15.4■□□□□ 0.06
RTN3-210ENST00000540798 TMX2Q9Y320 296 aa15.4■□□□□ 0.06
RTN3-210ENST00000540798 ADGRG1Q9Y653 693 aa15.4■□□□□ 0.06
RTN3-210ENST00000540798 SLU7O95391 586 aaKnown RBP15.39■□□□□ 0.05
RTN3-210ENST00000540798 DPEP1P16444 411 aa15.39■□□□□ 0.05
RTN3-210ENST00000540798 SREBF1P36956 1147 aa15.39■□□□□ 0.05
RTN3-210ENST00000540798 PSMD2Q13200 908 aa15.39■□□□□ 0.05
RTN3-210ENST00000540798 CSGALNACT2Q8N6G5 542 aa15.39■□□□□ 0.05
RTN3-210ENST00000540798 DNAJC19Q96DA6 116 aa15.39■□□□□ 0.05
RTN3-210ENST00000540798 ATAD5Q96QE3 1844 aa15.39■□□□□ 0.05
RTN3-210ENST00000540798 TCP10L2B9ZVM9 353 aa15.39■□□□□ 0.05
RTN3-210ENST00000540798 PIK3CDO00329 1044 aa15.39■□□□□ 0.05
RTN3-210ENST00000540798 TBX3O15119 743 aa15.39■□□□□ 0.05
RTN3-210ENST00000540798 FOSP01100 380 aaPredicted RBP15.39■□□□□ 0.05
RTN3-210ENST00000540798 UBXN1Q04323 297 aa15.39■□□□□ 0.05
RTN3-210ENST00000540798 SPIRE1Q08AE8 756 aa15.39■□□□□ 0.05
RTN3-210ENST00000540798 DLGAP5Q15398 846 aa15.39■□□□□ 0.05
RTN3-210ENST00000540798 GUF1Q8N442 669 aaKnown RBP15.39■□□□□ 0.05
RTN3-210ENST00000540798 SLC16A10Q8TF71 515 aa15.39■□□□□ 0.05
RTN3-210ENST00000540798 LENG9Q96B70 501 aa15.39■□□□□ 0.05
RTN3-210ENST00000540798 NT5C3AQ9H0P0 336 aa15.39■□□□□ 0.05
RTN3-210ENST00000540798 ZNF277Q9NRM2 450 aaPredicted RBP15.39■□□□□ 0.05
RTN3-210ENST00000540798 RBBP6Q7Z6E9 1792 aaKnown RBP15.39■□□□□ 0.05
RTN3-210ENST00000540798 RAD17O75943 681 aa15.39■□□□□ 0.05
RTN3-210ENST00000540798 TPM1P09493 284 aa15.39■□□□□ 0.05
RTN3-210ENST00000540798 CIITAP33076 1130 aa15.39■□□□□ 0.05
RTN3-210ENST00000540798 ARHGAP4P98171 946 aa15.39■□□□□ 0.05
RTN3-210ENST00000540798 KIAA1755Q5JYT7 1200 aa15.39■□□□□ 0.05
RTN3-210ENST00000540798 FAM114A1Q8IWE2 563 aa15.39■□□□□ 0.05
RTN3-210ENST00000540798 SLFN12Q8IYM2 578 aa15.39■□□□□ 0.05
RTN3-210ENST00000540798 LARGE2Q8N3Y3 721 aa15.39■□□□□ 0.05
RTN3-210ENST00000540798 AGBL3Q8NEM8 1001 aa15.39■□□□□ 0.05
RTN3-210ENST00000540798 CPLX3Q8WVH0 158 aa15.39■□□□□ 0.05
RTN3-210ENST00000540798 GJA10Q969M2 543 aa15.39■□□□□ 0.05
RTN3-210ENST00000540798 RAD21O60216 631 aa15.38■□□□□ 0.05
RTN3-210ENST00000540798 CCDC175P0C221 793 aa15.38■□□□□ 0.05
RTN3-210ENST00000540798 DNM2P50570 870 aa15.38■□□□□ 0.05
RTN3-210ENST00000540798 MAP3K10Q02779 954 aa15.38■□□□□ 0.05
RTN3-210ENST00000540798 TMTC1Q8IUR5 882 aa15.38■□□□□ 0.05
RTN3-210ENST00000540798 DDX12PQ92771 950 aa15.38■□□□□ 0.05
RTN3-210ENST00000540798 HPS3Q969F9 1004 aa15.38■□□□□ 0.05
RTN3-210ENST00000540798 TTYH3Q9C0H2 523 aa15.38■□□□□ 0.05
RTN3-210ENST00000540798 MRPL44Q9H9J2 332 aaKnown RBP15.38■□□□□ 0.05
RTN3-210ENST00000540798 DNAI1Q9UI46 699 aa15.38■□□□□ 0.05
RTN3-210ENST00000540798 PRR12Q9ULL5 1215 aa15.38■□□□□ 0.05
RTN3-210ENST00000540798 ABCB11O95342 1321 aa15.38■□□□□ 0.05
RTN3-210ENST00000540798 ERVK-24P63145 666 aa15.38■□□□□ 0.05
RTN3-210ENST00000540798 DMTNQ08495 405 aa15.38■□□□□ 0.05
RTN3-210ENST00000540798 MIIPQ5JXC2 388 aa15.38■□□□□ 0.05
RTN3-210ENST00000540798 DNAJC7Q99615 494 aa15.38■□□□□ 0.05
RTN3-210ENST00000540798 DESI2Q9BSY9 194 aa15.38■□□□□ 0.05
RTN3-210ENST00000540798 ARHGEF10LQ9HCE6 1279 aa15.38■□□□□ 0.05
RTN3-210ENST00000540798 MAGEC2Q9UBF1 373 aaPredicted RBP15.38■□□□□ 0.05
RTN3-210ENST00000540798 ZBTB21Q9ULJ3 1066 aa15.38■□□□□ 0.05
RTN3-210ENST00000540798 SMCHD1A6NHR9 2005 aa15.38■□□□□ 0.05
RTN3-210ENST00000540798 CLRN2A0PK11 232 aa15.37■□□□□ 0.05
RTN3-210ENST00000540798 PLA2G6O60733 806 aa15.37■□□□□ 0.05
RTN3-210ENST00000540798 CYP3A4P08684 503 aa15.37■□□□□ 0.05
RTN3-210ENST00000540798 SNAP25P60880 206 aa15.37■□□□□ 0.05
RTN3-210ENST00000540798 FAM83AQ86UY5 434 aa15.37■□□□□ 0.05
RTN3-210ENST00000540798 KIFC2Q96AC6 838 aa15.37■□□□□ 0.05
RTN3-210ENST00000540798 CNOT6LQ96LI5 555 aaKnown RBP15.37■□□□□ 0.05
RTN3-210ENST00000540798 TUBGCP2Q9BSJ2 902 aa15.37■□□□□ 0.05
RTN3-210ENST00000540798 SLC39A2Q9NP94 309 aa15.37■□□□□ 0.05
RTN3-210ENST00000540798 ZNRF3Q9ULT6 936 aa15.37■□□□□ 0.05
RTN3-210ENST00000540798 ZSCAN20P17040 1043 aaPredicted RBP15.37■□□□□ 0.05
RTN3-210ENST00000540798 ECE1P42892 770 aa15.37■□□□□ 0.05
RTN3-210ENST00000540798 CAPN11Q9UMQ6 739 aa15.37■□□□□ 0.05
RTN3-210ENST00000540798 NAA30Q147X3 362 aaPredicted RBP15.37■□□□□ 0.05
RTN3-210ENST00000540798 RASSF10A6NK89 507 aa15.36■□□□□ 0.05
RTN3-210ENST00000540798 CYP26C1Q6V0L0 522 aa15.36■□□□□ 0.05
RTN3-210ENST00000540798 DYMQ7RTS9 669 aa15.36■□□□□ 0.05
RTN3-210ENST00000540798 OGFOD1Q8N543 542 aa15.36■□□□□ 0.05
RTN3-210ENST00000540798 ACER1Q8TDN7 264 aa15.36■□□□□ 0.05
RTN3-210ENST00000540798 ZBTB12Q9Y330 459 aaPredicted RBP15.36■□□□□ 0.05
RTN3-210ENST00000540798 STAT2P52630 851 aa15.36■□□□□ 0.05
RTN3-210ENST00000540798 LRRC63Q05C16 580 aa15.36■□□□□ 0.05
RTN3-210ENST00000540798 DHX37Q8IY37 1157 aaKnown RBP15.36■□□□□ 0.05
RTN3-210ENST00000540798 WDR24Q96S15 920 aa15.36■□□□□ 0.05
RTN3-210ENST00000540798 RANBP17Q9H2T7 1088 aaKnown RBP15.36■□□□□ 0.05
RTN3-210ENST00000540798 GOPCQ9HD26 462 aa15.36■□□□□ 0.05
RTN3-210ENST00000540798 PCDHA2Q9Y5H9 948 aa15.36■□□□□ 0.05
RTN3-210ENST00000540798 TTC26A0AVF1 554 aa15.35■□□□□ 0.05
RTN3-210ENST00000540798 USH1GQ495M9 461 aa15.35■□□□□ 0.05
RTN3-210ENST00000540798 RETREG2Q8NC44 543 aa15.35■□□□□ 0.05
RTN3-210ENST00000540798 ZFP91Q96JP5 570 aaPredicted RBP15.35■□□□□ 0.05
RTN3-210ENST00000540798 ERGIC2Q96RQ1 377 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms