RNA–Protein interactions for RNA: ENST00000540475.5

SEMA4D-223, Transcript of semaphorin 4D, humanhuman

TSL 3

Gene SEMA4D, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-223ENST00000540475 ACRP10323 421 aa15.21■□□□□ 0.03
SEMA4D-223ENST00000540475 HOXD8P13378 290 aaPredicted RBP15.21■□□□□ 0.03
SEMA4D-223ENST00000540475 LIFRP42702 1097 aa15.21■□□□□ 0.03
SEMA4D-223ENST00000540475 BMP2KLQ5H9B9 411 aa15.21■□□□□ 0.03
SEMA4D-223ENST00000540475 KCNV1Q6PIU1 500 aa15.21■□□□□ 0.03
SEMA4D-223ENST00000540475 SEPT14Q6ZU15 432 aa15.21■□□□□ 0.03
SEMA4D-223ENST00000540475 CENPQQ7L2Z9 268 aaPredicted RBP15.21■□□□□ 0.03
SEMA4D-223ENST00000540475 RPUSD2Q8IZ73 545 aaKnown RBP15.21■□□□□ 0.03
SEMA4D-223ENST00000540475 TMTC2Q8N394 836 aa15.21■□□□□ 0.03
SEMA4D-223ENST00000540475 KAT2BQ92831 832 aa15.21■□□□□ 0.03
SEMA4D-223ENST00000540475 SPZ1Q9BXG8 430 aa15.21■□□□□ 0.03
SEMA4D-223ENST00000540475 TRMT13Q9NUP7 481 aaKnown RBP15.21■□□□□ 0.03
SEMA4D-223ENST00000540475 TRANK1O15050 2925 aa15.2■□□□□ 0.02
SEMA4D-223ENST00000540475 FRMPD4Q14CM0 1322 aa15.2■□□□□ 0.02
SEMA4D-223ENST00000540475 PITPNM1O00562 1244 aa15.2■□□□□ 0.02
SEMA4D-223ENST00000540475 SLC27A2O14975 620 aa15.2■□□□□ 0.02
SEMA4D-223ENST00000540475 DDAH1O94760 285 aa15.2■□□□□ 0.02
SEMA4D-223ENST00000540475 FGBP02675 491 aa15.2■□□□□ 0.02
SEMA4D-223ENST00000540475 TGFB3P10600 412 aa15.2■□□□□ 0.02
SEMA4D-223ENST00000540475 EIF2AK2P19525 551 aaKnown RBP15.2■□□□□ 0.02
SEMA4D-223ENST00000540475 DNAJB2P25686 324 aa15.2■□□□□ 0.02
SEMA4D-223ENST00000540475 MCM5P33992 734 aa15.2■□□□□ 0.02
SEMA4D-223ENST00000540475 LAMC2Q13753 1193 aa15.2■□□□□ 0.02
SEMA4D-223ENST00000540475 PGM5Q15124 567 aa15.2■□□□□ 0.02
SEMA4D-223ENST00000540475 AFG1LQ8WV93 481 aa15.2■□□□□ 0.02
SEMA4D-223ENST00000540475 TMEM87BQ96K49 555 aa15.2■□□□□ 0.02
SEMA4D-223ENST00000540475 FAM161BQ96MY7 647 aa15.2■□□□□ 0.02
SEMA4D-223ENST00000540475 TET1Q8NFU7 2136 aa15.2■□□□□ 0.02
SEMA4D-223ENST00000540475 GCOM1H8Y6P7 765 aaPredicted RBP15.19■□□□□ 0.02
SEMA4D-223ENST00000540475 SH2B2O14492 632 aaPredicted RBP15.19■□□□□ 0.02
SEMA4D-223ENST00000540475 PFKMP08237 780 aa15.19■□□□□ 0.02
SEMA4D-223ENST00000540475 POLR2MP0CAP2 368 aa15.19■□□□□ 0.02
SEMA4D-223ENST00000540475 CASTP20810 708 aaKnown RBP15.19■□□□□ 0.02
SEMA4D-223ENST00000540475 CCL23P55773 120 aa15.19■□□□□ 0.02
SEMA4D-223ENST00000540475 COL9A3Q14050 684 aaPredicted RBP15.19■□□□□ 0.02
SEMA4D-223ENST00000540475 MYSM1Q5VVJ2 828 aa15.19■□□□□ 0.02
SEMA4D-223ENST00000540475 CREB3L3Q68CJ9 461 aa15.19■□□□□ 0.02
SEMA4D-223ENST00000540475 HOMER1Q86YM7 354 aa15.19■□□□□ 0.02
SEMA4D-223ENST00000540475 ZNF654Q8IZM8 581 aa15.19■□□□□ 0.02
SEMA4D-223ENST00000540475 PPTC7Q8NI37 304 aa15.19■□□□□ 0.02
SEMA4D-223ENST00000540475 CTAGE1Q96RT6 745 aa15.19■□□□□ 0.02
SEMA4D-223ENST00000540475 LZTS2Q9BRK4 669 aa15.19■□□□□ 0.02
SEMA4D-223ENST00000540475 SPTBN5Q9NRC6 3674 aaKnown RBP15.18■□□□□ 0.02
SEMA4D-223ENST00000540475 REV3LO60673 3130 aa15.18■□□□□ 0.02
SEMA4D-223ENST00000540475 HAS3O00219 553 aa15.18■□□□□ 0.02
SEMA4D-223ENST00000540475 PIK3CDO00329 1044 aa15.18■□□□□ 0.02
SEMA4D-223ENST00000540475 PRC1O43663 620 aa15.18■□□□□ 0.02
SEMA4D-223ENST00000540475 CYP2C9P11712 490 aa15.18■□□□□ 0.02
SEMA4D-223ENST00000540475 HOXA13P31271 388 aaPredicted RBP15.18■□□□□ 0.02
SEMA4D-223ENST00000540475 RFC2P35250 354 aa15.18■□□□□ 0.02
SEMA4D-223ENST00000540475 DGKDQ16760 1214 aa15.18■□□□□ 0.02
SEMA4D-223ENST00000540475 TSGA10IPQ3SY00 556 aa15.18■□□□□ 0.02
SEMA4D-223ENST00000540475 PBX4Q9BYU1 374 aa15.18■□□□□ 0.02
SEMA4D-223ENST00000540475 CXXC1Q9P0U4 656 aaPredicted RBP15.18■□□□□ 0.02
SEMA4D-223ENST00000540475 MRVI1Q9Y6F6 885 aa15.18■□□□□ 0.02
SEMA4D-223ENST00000540475 MYO9BQ13459 2157 aa15.18■□□□□ 0.02
SEMA4D-223ENST00000540475 DOCK5Q9H7D0 1870 aa15.17■□□□□ 0.02
SEMA4D-223ENST00000540475 PPFIA4O75335 1185 aa15.17■□□□□ 0.02
SEMA4D-223ENST00000540475 STAM2O75886 525 aa15.17■□□□□ 0.02
SEMA4D-223ENST00000540475 F2P00734 622 aa15.17■□□□□ 0.02
SEMA4D-223ENST00000540475 IQCF3P0C7M6 154 aa15.17■□□□□ 0.02
SEMA4D-223ENST00000540475 ICAM3P32942 547 aa15.17■□□□□ 0.02
SEMA4D-223ENST00000540475 KIF5BP33176 963 aa15.17■□□□□ 0.02
SEMA4D-223ENST00000540475 GNAQP50148 359 aa15.17■□□□□ 0.02
SEMA4D-223ENST00000540475 RBL2Q08999 1139 aa15.17■□□□□ 0.02
SEMA4D-223ENST00000540475 CELF3Q5SZQ8 465 aaKnown RBP15.17■□□□□ 0.02
SEMA4D-223ENST00000540475 CASC1Q6TDU7 716 aa15.17■□□□□ 0.02
SEMA4D-223ENST00000540475 SGMS1Q86VZ5 419 aa15.17■□□□□ 0.02
SEMA4D-223ENST00000540475 IL31RAQ8NI17 732 aa15.17■□□□□ 0.02
SEMA4D-223ENST00000540475 CTCFLQ8NI51 663 aaPredicted RBP15.17■□□□□ 0.02
SEMA4D-223ENST00000540475 TIFAQ96CG3 184 aa15.17■□□□□ 0.02
SEMA4D-223ENST00000540475 SCLYQ96I15 445 aa15.17■□□□□ 0.02
SEMA4D-223ENST00000540475 MTIF3Q9H2K0 278 aaKnown RBP15.17■□□□□ 0.02
SEMA4D-223ENST00000540475 ZNF576Q9H609 170 aa15.17■□□□□ 0.02
SEMA4D-223ENST00000540475 PTPRSQ13332 1948 aa15.16■□□□□ 0.02
SEMA4D-223ENST00000540475 GRXCR1A8MXD5 290 aa15.16■□□□□ 0.02
SEMA4D-223ENST00000540475 CALM1P0DP23 149 aa15.16■□□□□ 0.02
SEMA4D-223ENST00000540475 CALM2P0DP24 149 aa15.16■□□□□ 0.02
SEMA4D-223ENST00000540475 CALM3P0DP25 149 aa15.16■□□□□ 0.02
SEMA4D-223ENST00000540475 CCND2P30279 289 aa15.16■□□□□ 0.02
SEMA4D-223ENST00000540475 PBX2P40425 430 aa15.16■□□□□ 0.02
SEMA4D-223ENST00000540475 MRPS9P82933 396 aaKnown RBP15.16■□□□□ 0.02
SEMA4D-223ENST00000540475 SP2Q02086 613 aa15.16■□□□□ 0.02
SEMA4D-223ENST00000540475 GRIN2CQ14957 1233 aa15.16■□□□□ 0.02
SEMA4D-223ENST00000540475 FAM47CQ5HY64 1035 aa15.16■□□□□ 0.02
SEMA4D-223ENST00000540475 DHX37Q8IY37 1157 aaKnown RBP15.16■□□□□ 0.02
SEMA4D-223ENST00000540475 SRBD1Q8N5C6 995 aaKnown RBP15.16■□□□□ 0.02
SEMA4D-223ENST00000540475 MYLIPQ8WY64 445 aa15.16■□□□□ 0.02
SEMA4D-223ENST00000540475 GTF2IRD1Q9UHL9 959 aa15.16■□□□□ 0.02
SEMA4D-223ENST00000540475 MEIS2O14770 477 aa15.15■□□□□ 0.02
SEMA4D-223ENST00000540475 MYCLP12524 364 aaPredicted RBP15.15■□□□□ 0.02
SEMA4D-223ENST00000540475 BFSP2Q13515 415 aa15.15■□□□□ 0.02
SEMA4D-223ENST00000540475 RAB30Q15771 203 aa15.15■□□□□ 0.02
SEMA4D-223ENST00000540475 PTGISQ16647 500 aa15.15■□□□□ 0.02
SEMA4D-223ENST00000540475 HSDL1Q3SXM5 330 aa15.15■□□□□ 0.02
SEMA4D-223ENST00000540475 GDF6Q6KF10 455 aaPredicted RBP15.15■□□□□ 0.02
SEMA4D-223ENST00000540475 OTOP2Q7RTS6 562 aa15.15■□□□□ 0.02
SEMA4D-223ENST00000540475 CAGE1Q8TC20 777 aa15.15■□□□□ 0.02
SEMA4D-223ENST00000540475 RRP36Q96EU6 259 aaKnown RBP15.15■□□□□ 0.02
SEMA4D-223ENST00000540475 INPP4AQ96PE3 977 aaPredicted RBP15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms