RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 ATP2B4P23634 1241 aa13.97□□□□□ -0.17
SFSWAP-208ENST00000539506 PICALMQ13492 652 aa13.97□□□□□ -0.17
SFSWAP-208ENST00000539506 ICE2Q659A1 982 aa13.97□□□□□ -0.17
SFSWAP-208ENST00000539506 COG1Q8WTW3 980 aa13.97□□□□□ -0.17
SFSWAP-208ENST00000539506 GJA10Q969M2 543 aa13.97□□□□□ -0.17
SFSWAP-208ENST00000539506 PNMA5Q96PV4 448 aa13.97□□□□□ -0.17
SFSWAP-208ENST00000539506 LRRC1Q9BTT6 524 aa13.97□□□□□ -0.17
SFSWAP-208ENST00000539506 ESYT3A0FGR9 886 aa13.97□□□□□ -0.17
SFSWAP-208ENST00000539506 PPP1R11O60927 126 aaPredicted RBP13.97□□□□□ -0.17
SFSWAP-208ENST00000539506 ASIC1P78348 528 aa13.97□□□□□ -0.17
SFSWAP-208ENST00000539506 DDR1Q08345 913 aa13.97□□□□□ -0.17
SFSWAP-208ENST00000539506 TRAPPC11Q7Z392 1133 aa13.97□□□□□ -0.17
SFSWAP-208ENST00000539506 BCAS4Q8TDM0 211 aa13.97□□□□□ -0.17
SFSWAP-208ENST00000539506 P2RX5Q93086 422 aa13.97□□□□□ -0.17
SFSWAP-208ENST00000539506 AK8Q96MA6 479 aa13.97□□□□□ -0.17
SFSWAP-208ENST00000539506 MTMR4Q9NYA4 1195 aa13.97□□□□□ -0.17
SFSWAP-208ENST00000539506 GOLGA6CA6NDK9 693 aa13.96□□□□□ -0.17
SFSWAP-208ENST00000539506 F8W031 263 aaPredicted RBP13.96□□□□□ -0.17
SFSWAP-208ENST00000539506 GOLGA6DP0CG33 693 aa13.96□□□□□ -0.17
SFSWAP-208ENST00000539506 GABPAQ06546 454 aa13.96□□□□□ -0.17
SFSWAP-208ENST00000539506 REXO1Q8N1G1 1221 aaKnown RBP13.96□□□□□ -0.17
SFSWAP-208ENST00000539506 CERS5Q8N5B7 392 aa13.96□□□□□ -0.17
SFSWAP-208ENST00000539506 DHTKD1Q96HY7 919 aaPredicted RBP13.96□□□□□ -0.17
SFSWAP-208ENST00000539506 GBP3Q9H0R5 595 aa13.96□□□□□ -0.17
SFSWAP-208ENST00000539506 SLC39A2Q9NP94 309 aa13.96□□□□□ -0.17
SFSWAP-208ENST00000539506 GOLGA6AQ9NYA3 693 aa13.96□□□□□ -0.17
SFSWAP-208ENST00000539506 LRWD1Q9UFC0 647 aa13.96□□□□□ -0.17
SFSWAP-208ENST00000539506 PRPF6O94906 941 aaKnown RBP13.96□□□□□ -0.18
SFSWAP-208ENST00000539506 CCNE1P24864 410 aa13.96□□□□□ -0.18
SFSWAP-208ENST00000539506 GNA11P29992 359 aa13.96□□□□□ -0.18
SFSWAP-208ENST00000539506 GTF2IP78347 998 aa13.96□□□□□ -0.18
SFSWAP-208ENST00000539506 CCDC96Q2M329 555 aa13.96□□□□□ -0.18
SFSWAP-208ENST00000539506 GLIS3Q8NEA6 775 aa13.96□□□□□ -0.18
SFSWAP-208ENST00000539506 KAT2BQ92831 832 aa13.96□□□□□ -0.18
SFSWAP-208ENST00000539506 CNOT6LQ96LI5 555 aaKnown RBP13.96□□□□□ -0.18
SFSWAP-208ENST00000539506 ZNF287Q9HBT7 754 aa13.96□□□□□ -0.18
SFSWAP-208ENST00000539506 SEC63Q9UGP8 760 aaKnown RBP13.96□□□□□ -0.18
SFSWAP-208ENST00000539506 POTEMA6NI47 508 aa13.95□□□□□ -0.18
SFSWAP-208ENST00000539506 MYMKA6NI61 221 aa13.95□□□□□ -0.18
SFSWAP-208ENST00000539506 RIMBP2O15034 1052 aa13.95□□□□□ -0.18
SFSWAP-208ENST00000539506 NAP1L1P55209 391 aaKnown RBP13.95□□□□□ -0.18
SFSWAP-208ENST00000539506 CORO7P57737 925 aa13.95□□□□□ -0.18
SFSWAP-208ENST00000539506 ECM1Q16610 540 aa13.95□□□□□ -0.18
SFSWAP-208ENST00000539506 TMC4Q7Z404 712 aa13.95□□□□□ -0.18
SFSWAP-208ENST00000539506 KCNK18Q7Z418 384 aa13.95□□□□□ -0.18
SFSWAP-208ENST00000539506 ARL8AQ96BM9 186 aa13.95□□□□□ -0.18
SFSWAP-208ENST00000539506 GOLGA6BA6NDN3 693 aa13.95□□□□□ -0.18
SFSWAP-208ENST00000539506 ZSCAN5CA6NGD5 496 aaPredicted RBP13.95□□□□□ -0.18
SFSWAP-208ENST00000539506 MOCS3O95396 460 aa13.95□□□□□ -0.18
SFSWAP-208ENST00000539506 GNGT1P63211 74 aa13.95□□□□□ -0.18
SFSWAP-208ENST00000539506 MEA1Q16626 185 aa13.95□□□□□ -0.18
SFSWAP-208ENST00000539506 MAP9Q49MG5 647 aa13.95□□□□□ -0.18
SFSWAP-208ENST00000539506 TTBK2Q6IQ55 1244 aa13.95□□□□□ -0.18
SFSWAP-208ENST00000539506 ACBD3Q9H3P7 528 aa13.95□□□□□ -0.18
SFSWAP-208ENST00000539506 CUEDC2Q9H467 287 aa13.95□□□□□ -0.18
SFSWAP-208ENST00000539506 GPCPD1Q9NPB8 672 aa13.95□□□□□ -0.18
SFSWAP-208ENST00000539506 EXOC1Q9NV70 894 aa13.95□□□□□ -0.18
SFSWAP-208ENST00000539506 IGKV6D-41A0A0C4DH26 115 aa13.95□□□□□ -0.18
SFSWAP-208ENST00000539506 C6orf229H3BNL8 230 aa13.95□□□□□ -0.18
SFSWAP-208ENST00000539506 EPHB6O15197 1021 aa13.95□□□□□ -0.18
SFSWAP-208ENST00000539506 PPFIA4O75335 1185 aa13.95□□□□□ -0.18
SFSWAP-208ENST00000539506 PDCLQ13371 301 aa13.95□□□□□ -0.18
SFSWAP-208ENST00000539506 NFRKBQ6P4R8 1299 aa13.95□□□□□ -0.18
SFSWAP-208ENST00000539506 FAM76AQ8TAV0 307 aa13.95□□□□□ -0.18
SFSWAP-208ENST00000539506 RBM17Q96I25 401 aaKnown RBP13.95□□□□□ -0.18
SFSWAP-208ENST00000539506 MS4A14Q96JA4 679 aa13.95□□□□□ -0.18
SFSWAP-208ENST00000539506 BUB1O43683 1085 aa13.94□□□□□ -0.18
SFSWAP-208ENST00000539506 SNHG28P0DPA3 235 aa13.94□□□□□ -0.18
SFSWAP-208ENST00000539506 SMARCA1P28370 1054 aa13.94□□□□□ -0.18
SFSWAP-208ENST00000539506 DNM2P50570 870 aa13.94□□□□□ -0.18
SFSWAP-208ENST00000539506 IRAK1P51617 712 aa13.94□□□□□ -0.18
SFSWAP-208ENST00000539506 SOGA3Q5TF21 947 aa13.94□□□□□ -0.18
SFSWAP-208ENST00000539506 DPP8Q6V1X1 898 aaPredicted RBP13.94□□□□□ -0.18
SFSWAP-208ENST00000539506 CNKSR2Q8WXI2 1034 aa13.94□□□□□ -0.18
SFSWAP-208ENST00000539506 CENPHQ9H3R5 247 aa13.94□□□□□ -0.18
SFSWAP-208ENST00000539506 NHEJ1Q9H9Q4 299 aaPredicted RBP13.94□□□□□ -0.18
SFSWAP-208ENST00000539506 FAM207AQ9NSI2 230 aaPredicted RBP13.94□□□□□ -0.18
SFSWAP-208ENST00000539506 TBC1D8BQ0IIM8 1120 aa13.94□□□□□ -0.18
SFSWAP-208ENST00000539506 UBE2SQ16763 222 aa13.94□□□□□ -0.18
SFSWAP-208ENST00000539506 DYMQ7RTS9 669 aa13.94□□□□□ -0.18
SFSWAP-208ENST00000539506 IFT81Q8WYA0 676 aa13.94□□□□□ -0.18
SFSWAP-208ENST00000539506 CAPN6Q9Y6Q1 641 aa13.94□□□□□ -0.18
SFSWAP-208ENST00000539506 ESYT2A0FGR8 921 aa13.93□□□□□ -0.18
SFSWAP-208ENST00000539506 ZNF263O14978 683 aa13.93□□□□□ -0.18
SFSWAP-208ENST00000539506 KRT14P02533 472 aa13.93□□□□□ -0.18
SFSWAP-208ENST00000539506 PLCG2P16885 1265 aa13.93□□□□□ -0.18
SFSWAP-208ENST00000539506 CALCRLQ16602 461 aa13.93□□□□□ -0.18
SFSWAP-208ENST00000539506 CCNI2Q6ZMN8 369 aaPredicted RBP13.93□□□□□ -0.18
SFSWAP-208ENST00000539506 ZSCAN29Q8IWY8 852 aaPredicted RBP13.93□□□□□ -0.18
SFSWAP-208ENST00000539506 TSEN2Q8NCE0 465 aaKnown RBP13.93□□□□□ -0.18
SFSWAP-208ENST00000539506 GJD4Q96KN9 370 aaPredicted RBP13.93□□□□□ -0.18
SFSWAP-208ENST00000539506 JMJD4Q9H9V9 463 aa13.93□□□□□ -0.18
SFSWAP-208ENST00000539506 EFCC1Q9HA90 598 aa13.93□□□□□ -0.18
SFSWAP-208ENST00000539506 MAGEF1Q9HAY2 307 aa13.93□□□□□ -0.18
SFSWAP-208ENST00000539506 MED4Q9NPJ6 270 aa13.93□□□□□ -0.18
SFSWAP-208ENST00000539506 MAGEC2Q9UBF1 373 aaPredicted RBP13.93□□□□□ -0.18
SFSWAP-208ENST00000539506 BBOX1O75936 387 aa13.93□□□□□ -0.18
SFSWAP-208ENST00000539506 HOXA10P31260 410 aaPredicted RBP13.93□□□□□ -0.18
SFSWAP-208ENST00000539506 SLC16A2P36021 539 aa13.93□□□□□ -0.18
SFSWAP-208ENST00000539506 APBA1Q02410 837 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms