RNA–Protein interactions for RNA: ENST00000537981.5

RTN3-208, Transcript of reticulon 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTN3, Length 2,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-208ENST00000537981 CEP131Q9UPN4 1083 aa11.76□□□□□ -0.53
RTN3-208ENST00000537981 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.76□□□□□ -0.53
RTN3-208ENST00000537981 MAST3O60307 1309 aa11.75□□□□□ -0.53
RTN3-208ENST00000537981 ROBO2Q9HCK4 1378 aa11.75□□□□□ -0.53
RTN3-208ENST00000537981 GCOM1H8Y6P7 765 aaPredicted RBP11.75□□□□□ -0.53
RTN3-208ENST00000537981 STXBP3O00186 592 aa11.75□□□□□ -0.53
RTN3-208ENST00000537981 WNT7AO00755 349 aa11.75□□□□□ -0.53
RTN3-208ENST00000537981 LIN7AO14910 233 aaPredicted RBP11.75□□□□□ -0.53
RTN3-208ENST00000537981 BUB1O43683 1085 aa11.75□□□□□ -0.53
RTN3-208ENST00000537981 SH3BP5O60239 455 aa11.75□□□□□ -0.53
RTN3-208ENST00000537981 MYZAPP0CAP1 466 aa11.75□□□□□ -0.53
RTN3-208ENST00000537981 ATP2A2P16615 1042 aaKnown RBP11.75□□□□□ -0.53
RTN3-208ENST00000537981 FUT4P22083 530 aa11.75□□□□□ -0.53
RTN3-208ENST00000537981 MLLT3P42568 568 aaPredicted RBP11.75□□□□□ -0.53
RTN3-208ENST00000537981 PMS1P54277 932 aaKnown RBP11.75□□□□□ -0.53
RTN3-208ENST00000537981 LRRC23Q53EV4 343 aaPredicted RBP11.75□□□□□ -0.53
RTN3-208ENST00000537981 ZNF572Q7Z3I7 529 aaPredicted RBP11.75□□□□□ -0.53
RTN3-208ENST00000537981 PAGE5Q96GU1 130 aa11.75□□□□□ -0.53
RTN3-208ENST00000537981 ELAC2Q9BQ52 826 aaKnown RBP11.75□□□□□ -0.53
RTN3-208ENST00000537981 UBA5Q9GZZ9 404 aa11.75□□□□□ -0.53
RTN3-208ENST00000537981 ABCF2Q9UG63 623 aa11.75□□□□□ -0.53
RTN3-208ENST00000537981 LUC7L2Q9Y383 392 aaKnown RBP11.75□□□□□ -0.53
RTN3-208ENST00000537981 CD2APQ9Y5K6 639 aa11.75□□□□□ -0.53
RTN3-208ENST00000537981 LRRC10BA6NIK2 292 aa11.75□□□□□ -0.53
RTN3-208ENST00000537981 PTPREP23469 700 aa11.75□□□□□ -0.53
RTN3-208ENST00000537981 TNFRSF8P28908 595 aa11.75□□□□□ -0.53
RTN3-208ENST00000537981 CUL3Q13618 768 aa11.75□□□□□ -0.53
RTN3-208ENST00000537981 SAFBQ15424 915 aaKnown RBP eCLIP11.75□□□□□ -0.53
RTN3-208ENST00000537981 AKNAD1Q5T1N1 836 aa11.75□□□□□ -0.53
RTN3-208ENST00000537981 IQCEQ6IPM2 695 aa11.75□□□□□ -0.53
RTN3-208ENST00000537981 MICU3Q86XE3 530 aa11.75□□□□□ -0.53
RTN3-208ENST00000537981 ELOA2Q8IYF1 753 aaPredicted RBP11.75□□□□□ -0.53
RTN3-208ENST00000537981 LRRC34Q8IZ02 419 aa11.75□□□□□ -0.53
RTN3-208ENST00000537981 CMTR1Q8N1G2 835 aaKnown RBP11.75□□□□□ -0.53
RTN3-208ENST00000537981 SDR16C5Q8N3Y7 309 aa11.75□□□□□ -0.53
RTN3-208ENST00000537981 CCDC197Q8NCU1 140 aa11.75□□□□□ -0.53
RTN3-208ENST00000537981 ANKRD24Q8TF21 1146 aa11.75□□□□□ -0.53
RTN3-208ENST00000537981 LBHD1Q9BQE6 289 aaPredicted RBP11.75□□□□□ -0.53
RTN3-208ENST00000537981 TLR10Q9BXR5 811 aa11.75□□□□□ -0.53
RTN3-208ENST00000537981 GNAT3A8MTJ3 354 aa11.74□□□□□ -0.53
RTN3-208ENST00000537981 RAD51CO43502 376 aa11.74□□□□□ -0.53
RTN3-208ENST00000537981 CTNND1O60716 968 aaKnown RBP11.74□□□□□ -0.53
RTN3-208ENST00000537981 STAT6P42226 847 aa11.74□□□□□ -0.53
RTN3-208ENST00000537981 PTPROQ16827 1216 aa11.74□□□□□ -0.53
RTN3-208ENST00000537981 TNNI3KQ59H18 835 aa11.74□□□□□ -0.53
RTN3-208ENST00000537981 TMEM154Q6P9G4 183 aa11.74□□□□□ -0.53
RTN3-208ENST00000537981 RBM12BQ8IXT5 1001 aaKnown RBP11.74□□□□□ -0.53
RTN3-208ENST00000537981 TRIML1Q8N9V2 468 aa11.74□□□□□ -0.53
RTN3-208ENST00000537981 ZNF317Q96PQ6 595 aaPredicted RBP11.74□□□□□ -0.53
RTN3-208ENST00000537981 MMTAG2Q9BU76 263 aaKnown RBP11.74□□□□□ -0.53
RTN3-208ENST00000537981 TMX4Q9H1E5 349 aaPredicted RBP11.74□□□□□ -0.53
RTN3-208ENST00000537981 ECT2Q9H8V3 914 aa11.74□□□□□ -0.53
RTN3-208ENST00000537981 AATFQ9NY61 560 aaKnown RBP eCLIP11.74□□□□□ -0.53
RTN3-208ENST00000537981 DLGAP2Q9P1A6 1054 aa11.74□□□□□ -0.53
RTN3-208ENST00000537981 GDAQ9Y2T3 454 aa11.74□□□□□ -0.53
RTN3-208ENST00000537981 FPGT-TNNI3KV9GXZ4 949 aa11.74□□□□□ -0.53
RTN3-208ENST00000537981 DLC1Q96QB1 1528 aa11.74□□□□□ -0.53
RTN3-208ENST00000537981 IFIT3O14879 490 aaKnown RBP11.74□□□□□ -0.53
RTN3-208ENST00000537981 SP100P23497 879 aaPredicted RBP11.74□□□□□ -0.53
RTN3-208ENST00000537981 ALDH3A1P30838 453 aa11.74□□□□□ -0.53
RTN3-208ENST00000537981 ERVK-9P63128 1117 aa11.74□□□□□ -0.53
RTN3-208ENST00000537981 GALNT17Q6IS24 598 aa11.74□□□□□ -0.53
RTN3-208ENST00000537981 MAMSTRQ6ZN01 415 aa11.74□□□□□ -0.53
RTN3-208ENST00000537981 KLHL7Q8IXQ5 586 aa11.74□□□□□ -0.53
RTN3-208ENST00000537981 IFT20Q8IY31 132 aa11.74□□□□□ -0.53
RTN3-208ENST00000537981 MREGQ8N565 214 aa11.74□□□□□ -0.53
RTN3-208ENST00000537981 OXER1Q8TDS5 423 aa11.74□□□□□ -0.53
RTN3-208ENST00000537981 CHMP6Q96FZ7 201 aa11.74□□□□□ -0.53
RTN3-208ENST00000537981 RMI1Q9H9A7 625 aa11.74□□□□□ -0.53
RTN3-208ENST00000537981 RYDENQ9NUL5 291 aaKnown RBP11.74□□□□□ -0.53
RTN3-208ENST00000537981 DBF4Q9UBU7 674 aaPredicted RBP11.74□□□□□ -0.53
RTN3-208ENST00000537981 USTQ9Y2C2 406 aa11.74□□□□□ -0.53
RTN3-208ENST00000537981 MON2Q7Z3U7 1717 aa11.73□□□□□ -0.53
RTN3-208ENST00000537981 LRRD1A4D1F6 860 aa11.73□□□□□ -0.53
RTN3-208ENST00000537981 CCND1P24385 295 aa11.73□□□□□ -0.53
RTN3-208ENST00000537981 CTNNA1P35221 906 aaKnown RBP11.73□□□□□ -0.53
RTN3-208ENST00000537981 APLP1P51693 650 aa11.73□□□□□ -0.53
RTN3-208ENST00000537981 INHBCP55103 352 aa11.73□□□□□ -0.53
RTN3-208ENST00000537981 AIMP1Q12904 312 aaKnown RBP11.73□□□□□ -0.53
RTN3-208ENST00000537981 HLTFQ14527 1009 aaKnown RBP eCLIP11.73□□□□□ -0.53
RTN3-208ENST00000537981 SETDB1Q15047 1291 aa11.73□□□□□ -0.53
RTN3-208ENST00000537981 ZC2HC1CQ53FD0 456 aaPredicted RBP11.73□□□□□ -0.53
RTN3-208ENST00000537981 UBAP2Q5T6F2 1119 aaKnown RBP11.73□□□□□ -0.53
RTN3-208ENST00000537981 RRAGBQ5VZM2 374 aa11.73□□□□□ -0.53
RTN3-208ENST00000537981 FAM47EQ6ZV65 393 aa11.73□□□□□ -0.53
RTN3-208ENST00000537981 TRPM8Q7Z2W7 1104 aa11.73□□□□□ -0.53
RTN3-208ENST00000537981 MB21D2Q8IYB1 491 aaPredicted RBP11.73□□□□□ -0.53
RTN3-208ENST00000537981 NUDT16Q96DE0 195 aaKnown RBP11.73□□□□□ -0.53
RTN3-208ENST00000537981 MTMR8Q96EF0 704 aa11.73□□□□□ -0.53
RTN3-208ENST00000537981 SLX1AQ9BQ83 275 aa11.73□□□□□ -0.53
RTN3-208ENST00000537981 INCENPQ9NQS7 918 aa11.73□□□□□ -0.53
RTN3-208ENST00000537981 AFF2P51816 1311 aa11.73□□□□□ -0.53
RTN3-208ENST00000537981 DDX60Q8IY21 1712 aaKnown RBP11.73□□□□□ -0.53
RTN3-208ENST00000537981 hCG_2014768A0A024R1R8 64 aa11.73□□□□□ -0.53
RTN3-208ENST00000537981 SRRM3A6NNA2 597 aaPredicted RBP11.73□□□□□ -0.53
RTN3-208ENST00000537981 TBC1D12O60347 775 aa11.73□□□□□ -0.53
RTN3-208ENST00000537981 KIF5AQ12840 1032 aa11.73□□□□□ -0.53
RTN3-208ENST00000537981 TRIM42Q8IWZ5 723 aa11.73□□□□□ -0.53
RTN3-208ENST00000537981 MB21D1Q8N884 522 aa11.73□□□□□ -0.53
RTN3-208ENST00000537981 KBTBD3Q8NAB2 608 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 90.7 ms