RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 IL1RL1Q01638 556 aa11.57□□□□□ -0.56
CLIP1-209ENST00000537178 DMP1Q13316 513 aaPredicted RBP11.57□□□□□ -0.56
CLIP1-209ENST00000537178 PPP2R5AQ15172 486 aa11.57□□□□□ -0.56
CLIP1-209ENST00000537178 FANCBQ8NB91 859 aa11.57□□□□□ -0.56
CLIP1-209ENST00000537178 NRBP2Q9NSY0 501 aa11.57□□□□□ -0.56
CLIP1-209ENST00000537178 POC1B-GALNT4F8VUJ3 575 aa11.57□□□□□ -0.56
CLIP1-209ENST00000537178 FOSP01100 380 aaPredicted RBP11.57□□□□□ -0.56
CLIP1-209ENST00000537178 XPAP23025 273 aaPredicted RBP11.57□□□□□ -0.56
CLIP1-209ENST00000537178 PKP1Q13835 747 aa11.57□□□□□ -0.56
CLIP1-209ENST00000537178 PRKG1Q13976 671 aa11.57□□□□□ -0.56
CLIP1-209ENST00000537178 PPP1R2P3Q6NXS1 205 aa11.57□□□□□ -0.56
CLIP1-209ENST00000537178 FBXO41Q8TF61 875 aa11.57□□□□□ -0.56
CLIP1-209ENST00000537178 USP28Q96RU2 1077 aa11.57□□□□□ -0.56
CLIP1-209ENST00000537178 SUDS3Q9H7L9 328 aaPredicted RBP11.57□□□□□ -0.56
CLIP1-209ENST00000537178 USP40Q9NVE5 1235 aa11.57□□□□□ -0.56
CLIP1-209ENST00000537178 ALAS1P13196 640 aa11.57□□□□□ -0.56
CLIP1-209ENST00000537178 TSTA3Q13630 321 aaPredicted RBP11.57□□□□□ -0.56
CLIP1-209ENST00000537178 ADAT2Q7Z6V5 191 aaKnown RBP11.57□□□□□ -0.56
CLIP1-209ENST00000537178 NT5C1BQ96P26 610 aa11.57□□□□□ -0.56
CLIP1-209ENST00000537178 CDC23Q9UJX2 597 aa11.57□□□□□ -0.56
CLIP1-209ENST00000537178 FMN2Q9NZ56 1722 aa11.56□□□□□ -0.56
CLIP1-209ENST00000537178 ATP8B1O43520 1251 aa11.56□□□□□ -0.56
CLIP1-209ENST00000537178 PTPREP23469 700 aa11.56□□□□□ -0.56
CLIP1-209ENST00000537178 ALDH1B1P30837 517 aa11.56□□□□□ -0.56
CLIP1-209ENST00000537178 EHHADHQ08426 723 aa11.56□□□□□ -0.56
CLIP1-209ENST00000537178 DCLK2Q8N568 766 aa11.56□□□□□ -0.56
CLIP1-209ENST00000537178 SLC17A8Q8NDX2 589 aa11.56□□□□□ -0.56
CLIP1-209ENST00000537178 ZSCAN10Q96SZ4 725 aaPredicted RBP11.56□□□□□ -0.56
CLIP1-209ENST00000537178 KDRP35968 1356 aa11.56□□□□□ -0.56
CLIP1-209ENST00000537178 TYW5A2RUC4 315 aaKnown RBP11.56□□□□□ -0.56
CLIP1-209ENST00000537178 CHL1O00533 1208 aa11.56□□□□□ -0.56
CLIP1-209ENST00000537178 LONP1P36776 959 aaKnown RBP11.56□□□□□ -0.56
CLIP1-209ENST00000537178 PEX19P40855 299 aa11.56□□□□□ -0.56
CLIP1-209ENST00000537178 MFAP3P55082 362 aa11.56□□□□□ -0.56
CLIP1-209ENST00000537178 PABPC4Q13310 644 aaKnown RBP eCLIP11.56□□□□□ -0.56
CLIP1-209ENST00000537178 RAPH1Q70E73 1250 aa11.56□□□□□ -0.56
CLIP1-209ENST00000537178 PNMA1Q8ND90 353 aa11.56□□□□□ -0.56
CLIP1-209ENST00000537178 PGBD1Q96JS3 809 aa11.56□□□□□ -0.56
CLIP1-209ENST00000537178 FGD4Q96M96 766 aa11.56□□□□□ -0.56
CLIP1-209ENST00000537178 SUGCTQ9HAC7 445 aa11.56□□□□□ -0.56
CLIP1-209ENST00000537178 CPS1P31327 1500 aa11.56□□□□□ -0.56
CLIP1-209ENST00000537178 SCG2P13521 617 aa11.56□□□□□ -0.56
CLIP1-209ENST00000537178 RPS8P62241 208 aaKnown RBP11.56□□□□□ -0.56
CLIP1-209ENST00000537178 ME3Q16798 604 aa11.56□□□□□ -0.56
CLIP1-209ENST00000537178 FBXO11Q86XK2 927 aa11.56□□□□□ -0.56
CLIP1-209ENST00000537178 MYLK4Q86YV6 388 aaPredicted RBP11.56□□□□□ -0.56
CLIP1-209ENST00000537178 SMYD2Q9NRG4 433 aa11.56□□□□□ -0.56
CLIP1-209ENST00000537178 FANCLQ9NW38 375 aa11.56□□□□□ -0.56
CLIP1-209ENST00000537178 JRKLQ9Y4A0 524 aa11.56□□□□□ -0.56
CLIP1-209ENST00000537178 RIMS2Q9UQ26 1411 aa11.56□□□□□ -0.56
CLIP1-209ENST00000537178 CASP2P42575 452 aa11.56□□□□□ -0.56
CLIP1-209ENST00000537178 IFNAR2P48551 515 aa11.56□□□□□ -0.56
CLIP1-209ENST00000537178 CCT5P48643 541 aa11.56□□□□□ -0.56
CLIP1-209ENST00000537178 RCN2Q14257 317 aa11.56□□□□□ -0.56
CLIP1-209ENST00000537178 DCAF15Q66K64 600 aa11.56□□□□□ -0.56
CLIP1-209ENST00000537178 KAZNQ674X7 775 aa11.56□□□□□ -0.56
CLIP1-209ENST00000537178 ARMC9Q7Z3E5 817 aa11.56□□□□□ -0.56
CLIP1-209ENST00000537178 PDCD7Q8N8D1 485 aaKnown RBP11.56□□□□□ -0.56
CLIP1-209ENST00000537178 TTC1Q99614 292 aa11.56□□□□□ -0.56
CLIP1-209ENST00000537178 TUBB6Q9BUF5 446 aa11.56□□□□□ -0.56
CLIP1-209ENST00000537178 BTG4Q9NY30 223 aa11.56□□□□□ -0.56
CLIP1-209ENST00000537178 CCPG1Q9ULG6 757 aa11.56□□□□□ -0.56
CLIP1-209ENST00000537178 DAAM1Q9Y4D1 1078 aa11.56□□□□□ -0.56
CLIP1-209ENST00000537178 CACNA1FO60840 1977 aa11.56□□□□□ -0.56
CLIP1-209ENST00000537178 KLRF2D3W0D1 207 aa11.55□□□□□ -0.56
CLIP1-209ENST00000537178 A1BGP04217 495 aa11.55□□□□□ -0.56
CLIP1-209ENST00000537178 RPN1P04843 607 aaKnown RBP11.55□□□□□ -0.56
CLIP1-209ENST00000537178 ARHGEF18Q6ZSZ5 1173 aa11.55□□□□□ -0.56
CLIP1-209ENST00000537178 PLA2G4DQ86XP0 818 aa11.55□□□□□ -0.56
CLIP1-209ENST00000537178 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.55□□□□□ -0.563e-6■■■■■ 31.2
CLIP1-209ENST00000537178 USP54Q70EL1 1684 aa11.55□□□□□ -0.56
CLIP1-209ENST00000537178 LRRIQ4A6NIV6 560 aa11.55□□□□□ -0.56
CLIP1-209ENST00000537178 TLR3O15455 904 aaKnown RBP11.55□□□□□ -0.56
CLIP1-209ENST00000537178 PFKFB2O60825 505 aa11.55□□□□□ -0.56
CLIP1-209ENST00000537178 MFSD14BQ5SR56 506 aa11.55□□□□□ -0.56
CLIP1-209ENST00000537178 RSRC2Q7L4I2 434 aaKnown RBP11.55□□□□□ -0.56
CLIP1-209ENST00000537178 GPT2Q8TD30 523 aa11.55□□□□□ -0.56
CLIP1-209ENST00000537178 FAM81BQ96LP2 452 aa11.55□□□□□ -0.56
CLIP1-209ENST00000537178 CUEDC2Q9H467 287 aa11.55□□□□□ -0.56
CLIP1-209ENST00000537178 SPATS2LQ9NUQ6 558 aaKnown RBP11.55□□□□□ -0.56
CLIP1-209ENST00000537178 STK17AQ9UEE5 414 aa11.55□□□□□ -0.56
CLIP1-209ENST00000537178 NUB1Q9Y5A7 615 aa11.55□□□□□ -0.56
CLIP1-209ENST00000537178 SBNO1A3KN83 1393 aa11.55□□□□□ -0.56
CLIP1-209ENST00000537178 KIAA0232Q92628 1395 aa11.55□□□□□ -0.56
CLIP1-209ENST00000537178 HSPA6P17066 643 aa11.55□□□□□ -0.56
CLIP1-209ENST00000537178 PTPROQ16827 1216 aa11.55□□□□□ -0.56
CLIP1-209ENST00000537178 TCP11X2Q5H9J9 407 aa11.55□□□□□ -0.56
CLIP1-209ENST00000537178 NAA35Q5VZE5 725 aa11.55□□□□□ -0.56
CLIP1-209ENST00000537178 LRRC8AQ8IWT6 810 aa11.55□□□□□ -0.56
CLIP1-209ENST00000537178 PNMA6EA0A0J9YXQ4 647 aa11.55□□□□□ -0.56
CLIP1-209ENST00000537178 COPB1P53618 953 aaKnown RBP11.55□□□□□ -0.56
CLIP1-209ENST00000537178 POLGP54098 1239 aaPredicted RBP11.55□□□□□ -0.56
CLIP1-209ENST00000537178 EPHB4P54760 987 aa11.55□□□□□ -0.56
CLIP1-209ENST00000537178 MESDQ14696 234 aa11.55□□□□□ -0.56
CLIP1-209ENST00000537178 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.55□□□□□ -0.56
CLIP1-209ENST00000537178 JPH2Q9BR39 696 aaPredicted RBP11.55□□□□□ -0.56
CLIP1-209ENST00000537178 SLC39A2Q9NP94 309 aa11.55□□□□□ -0.56
CLIP1-209ENST00000537178 DDX25Q9UHL0 483 aaKnown RBP11.55□□□□□ -0.56
CLIP1-209ENST00000537178 MID2Q9UJV3 735 aa11.55□□□□□ -0.56
CLIP1-209ENST00000537178 KRT10P13645 584 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms