RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 GATAD2BQ8WXI9 593 aa4.95□□□□□ -1.62
CD44-226ENST00000527889 APPBP2Q92624 585 aa4.95□□□□□ -1.62
CD44-226ENST00000527889 NXPE3Q969Y0 559 aa4.95□□□□□ -1.62
CD44-226ENST00000527889 TRERF1Q96PN7 1200 aa4.95□□□□□ -1.62
CD44-226ENST00000527889 KIF2CQ99661 725 aa4.95□□□□□ -1.62
CD44-226ENST00000527889 ANTXR1Q9H6X2 564 aa4.95□□□□□ -1.62
CD44-226ENST00000527889 ST7Q9NRC1 585 aa4.95□□□□□ -1.62
CD44-226ENST00000527889 STK32BQ9NY57 414 aa4.95□□□□□ -1.62
CD44-226ENST00000527889 ACTR10Q9NZ32 417 aa4.95□□□□□ -1.62
CD44-226ENST00000527889 PCDHB5Q9Y5E4 795 aa4.95□□□□□ -1.62
CD44-226ENST00000527889 DDX60LQ5H9U9 1706 aaKnown RBP4.94□□□□□ -1.62
CD44-226ENST00000527889 MED23Q9ULK4 1368 aa4.94□□□□□ -1.62
CD44-226ENST00000527889 ATXN7O15265 892 aaPredicted RBP4.94□□□□□ -1.62
CD44-226ENST00000527889 PDPK1O15530 556 aa4.94□□□□□ -1.62
CD44-226ENST00000527889 MMP10P09238 476 aa4.94□□□□□ -1.62
CD44-226ENST00000527889 MAPTP10636 758 aaKnown RBP4.94□□□□□ -1.62
CD44-226ENST00000527889 HMGB2P26583 209 aaKnown RBP4.94□□□□□ -1.62
CD44-226ENST00000527889 KLRK1P26718 216 aa4.94□□□□□ -1.62
CD44-226ENST00000527889 GYG1P46976 350 aa4.94□□□□□ -1.62
CD44-226ENST00000527889 INSM1Q01101 510 aaPredicted RBP4.94□□□□□ -1.62
CD44-226ENST00000527889 AMPD3Q01432 767 aa4.94□□□□□ -1.62
CD44-226ENST00000527889 CTBSQ01459 385 aa4.94□□□□□ -1.62
CD44-226ENST00000527889 PLAURQ03405 335 aa4.94□□□□□ -1.62
CD44-226ENST00000527889 PTH1RQ03431 593 aa4.94□□□□□ -1.62
CD44-226ENST00000527889 TNP2Q05952 138 aa4.94□□□□□ -1.62
CD44-226ENST00000527889 IFRD2Q12894 506 aaPredicted RBP4.94□□□□□ -1.62
CD44-226ENST00000527889 SQSTM1Q13501 440 aa4.94□□□□□ -1.62
CD44-226ENST00000527889 GRAPQ13588 217 aa4.94□□□□□ -1.62
CD44-226ENST00000527889 LAMC2Q13753 1193 aa4.94□□□□□ -1.62
CD44-226ENST00000527889 MPP2Q14168 576 aa4.94□□□□□ -1.62
CD44-226ENST00000527889 ARSHQ5FYA8 562 aa4.94□□□□□ -1.62
CD44-226ENST00000527889 FOXR1Q6PIV2 292 aa4.94□□□□□ -1.62
CD44-226ENST00000527889 ZNF589Q86UQ0 364 aaPredicted RBP4.94□□□□□ -1.62
CD44-226ENST00000527889 HOMER1Q86YM7 354 aa4.94□□□□□ -1.62
CD44-226ENST00000527889 KBTBD3Q8NAB2 608 aa4.94□□□□□ -1.62
CD44-226ENST00000527889 ZSCAN1Q8NBB4 408 aa4.94□□□□□ -1.62
CD44-226ENST00000527889 FLAD1Q8NFF5 587 aa4.94□□□□□ -1.62
CD44-226ENST00000527889 OR6P1Q8NGX9 317 aa4.94□□□□□ -1.62
CD44-226ENST00000527889 GRAPLQ8TC17 118 aaPredicted RBP4.94□□□□□ -1.62
CD44-226ENST00000527889 PPIL4Q8WUA2 492 aaKnown RBP eCLIP4.94□□□□□ -1.62
CD44-226ENST00000527889 RUFY2Q8WXA3 655 aa4.94□□□□□ -1.62
CD44-226ENST00000527889 LPIN2Q92539 896 aa4.94□□□□□ -1.62
CD44-226ENST00000527889 RPGRQ92834 1020 aaKnown RBP4.94□□□□□ -1.62
CD44-226ENST00000527889 FERD3LQ96RJ6 166 aa4.94□□□□□ -1.62
CD44-226ENST00000527889 SEC62Q99442 399 aaKnown RBP4.94□□□□□ -1.62
CD44-226ENST00000527889 LSG1Q9H089 658 aaKnown RBP4.94□□□□□ -1.62
CD44-226ENST00000527889 SLKQ9H2G2 1235 aaPredicted RBP4.94□□□□□ -1.62
CD44-226ENST00000527889 TMX1Q9H3N1 280 aa4.94□□□□□ -1.62
CD44-226ENST00000527889 BSDC1Q9NW68 430 aaPredicted RBP4.94□□□□□ -1.62
CD44-226ENST00000527889 TMEM260Q9NX78 707 aa4.94□□□□□ -1.62
CD44-226ENST00000527889 PALD1Q9ULE6 856 aa4.94□□□□□ -1.62
CD44-226ENST00000527889 ATXN7L1Q9ULK2 861 aaPredicted RBP4.94□□□□□ -1.62
CD44-226ENST00000527889 ZNRF3Q9ULT6 936 aa4.94□□□□□ -1.62
CD44-226ENST00000527889 MINPP1Q9UNW1 487 aa4.94□□□□□ -1.62
CD44-226ENST00000527889 MAPK8IP1Q9UQF2 711 aa4.94□□□□□ -1.62
CD44-226ENST00000527889 PCDHGC4Q9Y5F7 938 aa4.94□□□□□ -1.62
CD44-226ENST00000527889 SZT2Q5T011 3432 aa4.94□□□□□ -1.62
CD44-226ENST00000527889 SIPA1L1O43166 1804 aa4.94□□□□□ -1.62
CD44-226ENST00000527889 RAD50Q92878 1312 aa4.94□□□□□ -1.62
CD44-226ENST00000527889 RFX7Q2KHR2 1363 aa4.93□□□□□ -1.62
CD44-226ENST00000527889 M0R2C6 588 aa4.93□□□□□ -1.62
CD44-226ENST00000527889 HIP1O00291 1037 aa4.93□□□□□ -1.62
CD44-226ENST00000527889 KHNYNO15037 678 aaKnown RBP4.93□□□□□ -1.62
CD44-226ENST00000527889 CILPO75339 1184 aa4.93□□□□□ -1.62
CD44-226ENST00000527889 UQCRFS1P1P0C7P4 283 aa4.93□□□□□ -1.62
CD44-226ENST00000527889 CD33P20138 364 aa4.93□□□□□ -1.62
CD44-226ENST00000527889 MX2P20592 715 aa4.93□□□□□ -1.62
CD44-226ENST00000527889 BMP6P22004 513 aa4.93□□□□□ -1.62
CD44-226ENST00000527889 FGFR3P22607 806 aa4.93□□□□□ -1.62
CD44-226ENST00000527889 MCM4P33991 863 aa4.93□□□□□ -1.62
CD44-226ENST00000527889 KCNJ4P48050 445 aa4.93□□□□□ -1.62
CD44-226ENST00000527889 ZNF165P49910 485 aa4.93□□□□□ -1.62
CD44-226ENST00000527889 GYS2P54840 703 aa4.93□□□□□ -1.62
CD44-226ENST00000527889 SRSF11Q05519 484 aaKnown RBP4.93□□□□□ -1.62
CD44-226ENST00000527889 FSTL1Q12841 308 aa4.93□□□□□ -1.62
CD44-226ENST00000527889 UBE4AQ14139 1066 aa4.93□□□□□ -1.62
CD44-226ENST00000527889 PLEKHG6Q3KR16 790 aa4.93□□□□□ -1.62
CD44-226ENST00000527889 CRY2Q49AN0 593 aa4.93□□□□□ -1.62
CD44-226ENST00000527889 FIGNL1Q6PIW4 674 aa4.93□□□□□ -1.62
CD44-226ENST00000527889 LYPD4Q6UWN0 246 aa4.93□□□□□ -1.62
CD44-226ENST00000527889 DHX32Q7L7V1 743 aaKnown RBP4.93□□□□□ -1.62
CD44-226ENST00000527889 TIAM2Q8IVF5 1701 aa4.93□□□□□ -1.62
CD44-226ENST00000527889 REXO1Q8N1G1 1221 aaKnown RBP4.93□□□□□ -1.62
CD44-226ENST00000527889 RBBP8NLQ8NC74 664 aaPredicted RBP4.93□□□□□ -1.62
CD44-226ENST00000527889 RBM17Q96I25 401 aaKnown RBP4.93□□□□□ -1.62
CD44-226ENST00000527889 NSUN5Q96P11 429 aaKnown RBP4.93□□□□□ -1.62
CD44-226ENST00000527889 GPR101Q96P66 508 aaPredicted RBP4.93□□□□□ -1.62
CD44-226ENST00000527889 PNMA5Q96PV4 448 aa4.93□□□□□ -1.62
CD44-226ENST00000527889 MIR1-1HGQ9H1L0 117 aa4.93□□□□□ -1.62
CD44-226ENST00000527889 TNKS2Q9H2K2 1166 aa4.93□□□□□ -1.62
CD44-226ENST00000527889 EFCC1Q9HA90 598 aa4.93□□□□□ -1.62
CD44-226ENST00000527889 BRMS1Q9HCU9 246 aa4.93□□□□□ -1.62
CD44-226ENST00000527889 NMRK2Q9NPI5 230 aa4.93□□□□□ -1.62
CD44-226ENST00000527889 PIH1D3Q9NQM4 214 aaKnown RBP4.93□□□□□ -1.62
CD44-226ENST00000527889 TMEM39AQ9NV64 488 aa4.93□□□□□ -1.62
CD44-226ENST00000527889 HMG20BQ9P0W2 317 aa4.93□□□□□ -1.62
CD44-226ENST00000527889 GPN3Q9UHW5 284 aaPredicted RBP4.93□□□□□ -1.62
CD44-226ENST00000527889 CCDC171Q6TFL3 1326 aa4.93□□□□□ -1.62
CD44-226ENST00000527889 WDR81Q562E7 1941 aa4.92□□□□□ -1.62
CD44-226ENST00000527889 PDE2AO00408 941 aaPredicted RBP4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms