RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 CD4P01730 458 aa23.77■■□□□ 1.4
VPS28-206ENST00000526734 MYL3P08590 195 aa23.77■■□□□ 1.4
VPS28-206ENST00000526734 TGFB3P10600 412 aa23.77■■□□□ 1.4
VPS28-206ENST00000526734 XRRA1Q6P2D8 792 aa23.77■■□□□ 1.4
VPS28-206ENST00000526734 FCHSD1Q86WN1 690 aa23.77■■□□□ 1.4
VPS28-206ENST00000526734 FBXL16Q8N461 479 aa23.77■■□□□ 1.4
VPS28-206ENST00000526734 SMARCC2Q8TAQ2 1214 aa23.77■■□□□ 1.4
VPS28-206ENST00000526734 TCEANC2Q96MN5 208 aa23.77■■□□□ 1.4
VPS28-206ENST00000526734 RANBP2P49792 3224 aaKnown RBP23.76■■□□□ 1.39
VPS28-206ENST00000526734 KLF18A0A0U1RQI7 1052 aa23.76■■□□□ 1.39
VPS28-206ENST00000526734 CCDC196A0A1B0GTZ2 297 aa23.76■■□□□ 1.39
VPS28-206ENST00000526734 hCG_1984214I3L0E3 225 aa23.76■■□□□ 1.39
VPS28-206ENST00000526734 TIMP1P01033 207 aa23.76■■□□□ 1.39
VPS28-206ENST00000526734 MYCLP12524 364 aaPredicted RBP23.76■■□□□ 1.39
VPS28-206ENST00000526734 FPGSQ05932 587 aa23.76■■□□□ 1.39
VPS28-206ENST00000526734 ARHGAP1Q07960 439 aa23.76■■□□□ 1.39
VPS28-206ENST00000526734 GNPTABQ3T906 1256 aa23.76■■□□□ 1.39
VPS28-206ENST00000526734 ZNF713Q8N859 430 aaPredicted RBP23.76■■□□□ 1.39
VPS28-206ENST00000526734 COPS5Q92905 334 aa23.76■■□□□ 1.39
VPS28-206ENST00000526734 DDX41Q9UJV9 622 aaKnown RBP23.76■■□□□ 1.39
VPS28-206ENST00000526734 DNAH12Q6ZR08 3092 aa23.75■■□□□ 1.39
VPS28-206ENST00000526734 BAZ2BQ9UIF8 2168 aaKnown RBP23.75■■□□□ 1.39
VPS28-206ENST00000526734 GOLGA8AA7E2F4 631 aa23.75■■□□□ 1.39
VPS28-206ENST00000526734 GOLGA8BA8MQT2 603 aa23.75■■□□□ 1.39
VPS28-206ENST00000526734 SUPT20HL2P0C7V6 817 aa23.75■■□□□ 1.39
VPS28-206ENST00000526734 PTPN11Q06124 597 aaPredicted RBP23.75■■□□□ 1.39
VPS28-206ENST00000526734 LAMC2Q13753 1193 aa23.75■■□□□ 1.39
VPS28-206ENST00000526734 LY6KQ17RY6 165 aa23.75■■□□□ 1.39
VPS28-206ENST00000526734 PPP1R18Q6NYC8 613 aa23.75■■□□□ 1.39
VPS28-206ENST00000526734 RAB11FIP4Q86YS3 637 aa23.75■■□□□ 1.39
VPS28-206ENST00000526734 BRPF3Q9ULD4 1205 aa23.75■■□□□ 1.39
VPS28-206ENST00000526734 GRIN2DO15399 1336 aa23.75■■□□□ 1.39
VPS28-206ENST00000526734 CNTNAP5Q8WYK1 1306 aa23.75■■□□□ 1.39
VPS28-206ENST00000526734 MFSD5Q6N075 450 aa23.74■■□□□ 1.39
VPS28-206ENST00000526734 NFRKBQ6P4R8 1299 aa23.74■■□□□ 1.39
VPS28-206ENST00000526734 CMTR1Q8N1G2 835 aaKnown RBP23.74■■□□□ 1.39
VPS28-206ENST00000526734 PSTPIP2Q9H939 334 aa23.74■■□□□ 1.39
VPS28-206ENST00000526734 MMP3P08254 477 aa23.73■■□□□ 1.39
VPS28-206ENST00000526734 CASTP20810 708 aaKnown RBP23.73■■□□□ 1.39
VPS28-206ENST00000526734 RPS6KB1P23443 525 aa23.73■■□□□ 1.39
VPS28-206ENST00000526734 ITGB8P26012 769 aa23.73■■□□□ 1.39
VPS28-206ENST00000526734 PSMC6P62333 389 aa23.73■■□□□ 1.39
VPS28-206ENST00000526734 PPIGQ13427 754 aaKnown RBP eCLIP23.73■■□□□ 1.391e-7■□□□□ 10.9
VPS28-206ENST00000526734 DHX37Q8IY37 1157 aaKnown RBP23.73■■□□□ 1.39
VPS28-206ENST00000526734 TMEM199Q8N511 208 aa23.73■■□□□ 1.39
VPS28-206ENST00000526734 IL31RAQ8NI17 732 aa23.73■■□□□ 1.39
VPS28-206ENST00000526734 PPTC7Q8NI37 304 aa23.73■■□□□ 1.39
VPS28-206ENST00000526734 AFG1LQ8WV93 481 aa23.73■■□□□ 1.39
VPS28-206ENST00000526734 AGXT2Q9BYV1 514 aa23.73■■□□□ 1.39
VPS28-206ENST00000526734 ALDH8A1Q9H2A2 487 aaPredicted RBP23.73■■□□□ 1.39
VPS28-206ENST00000526734 NID2Q14112 1375 aa23.73■■□□□ 1.39
VPS28-206ENST00000526734 KIAA1217Q5T5P2 1943 aa23.72■■□□□ 1.39
VPS28-206ENST00000526734 SOX1O00570 391 aaPredicted RBP23.72■■□□□ 1.39
VPS28-206ENST00000526734 MEIS2O14770 477 aa23.72■■□□□ 1.39
VPS28-206ENST00000526734 EIF5BO60841 1220 aaKnown RBP23.72■■□□□ 1.39
VPS28-206ENST00000526734 RGS20O76081 388 aa23.72■■□□□ 1.39
VPS28-206ENST00000526734 DGKDQ16760 1214 aa23.72■■□□□ 1.39
VPS28-206ENST00000526734 Q6ZUG5 572 aa23.72■■□□□ 1.39
VPS28-206ENST00000526734 HEATR3Q7Z4Q2 680 aa23.72■■□□□ 1.39
VPS28-206ENST00000526734 CCDC82Q8N4S0 544 aa23.72■■□□□ 1.39
VPS28-206ENST00000526734 INPP4AQ96PE3 977 aaPredicted RBP23.72■■□□□ 1.39
VPS28-206ENST00000526734 ICAM3P32942 547 aa23.71■■□□□ 1.39
VPS28-206ENST00000526734 METAP2P50579 478 aaKnown RBP eCLIP23.71■■□□□ 1.39
VPS28-206ENST00000526734 FUT2Q10981 343 aa23.71■■□□□ 1.39
VPS28-206ENST00000526734 PCNX4Q63HM2 1172 aa23.71■■□□□ 1.39
VPS28-206ENST00000526734 USP17L6PQ6QN14 398 aa23.71■■□□□ 1.39
VPS28-206ENST00000526734 BRF1Q92994 677 aa23.71■■□□□ 1.39
VPS28-206ENST00000526734 KATNAL1Q9BW62 490 aa23.71■■□□□ 1.39
VPS28-206ENST00000526734 GLT8D2Q9H1C3 349 aa23.71■■□□□ 1.39
VPS28-206ENST00000526734 HIPK3Q9H422 1215 aa23.71■■□□□ 1.39
VPS28-206ENST00000526734 EHMT1Q9H9B1 1298 aa23.71■■□□□ 1.39
VPS28-206ENST00000526734 FIBPO43427 364 aa23.7■■□□□ 1.38
VPS28-206ENST00000526734 B4GALT4O60513 344 aa23.7■■□□□ 1.38
VPS28-206ENST00000526734 SHHQ15465 462 aa23.7■■□□□ 1.38
VPS28-206ENST00000526734 NBPF20Q3BBV1 942 aa23.7■■□□□ 1.38
VPS28-206ENST00000526734 CELF3Q5SZQ8 465 aaKnown RBP23.7■■□□□ 1.38
VPS28-206ENST00000526734 TM6SF1Q9BZW5 370 aa23.7■■□□□ 1.38
VPS28-206ENST00000526734 PCDH10Q9P2E7 1040 aa23.7■■□□□ 1.38
VPS28-206ENST00000526734 NAP1L2Q9ULW6 460 aaPredicted RBP23.7■■□□□ 1.38
VPS28-206ENST00000526734 SCN10AQ9Y5Y9 1956 aa23.7■■□□□ 1.38
VPS28-206ENST00000526734 SPDYE3A6NKU9 549 aa23.69■■□□□ 1.38
VPS28-206ENST00000526734 HOXD8P13378 290 aaPredicted RBP23.69■■□□□ 1.38
VPS28-206ENST00000526734 UBA1P22314 1058 aaKnown RBP23.69■■□□□ 1.38
VPS28-206ENST00000526734 MYSM1Q5VVJ2 828 aa23.69■■□□□ 1.38
VPS28-206ENST00000526734 NLRX1Q86UT6 975 aa23.69■■□□□ 1.38
VPS28-206ENST00000526734 LRCH3Q96II8 777 aa23.69■■□□□ 1.38
VPS28-206ENST00000526734 USP26Q9BXU7 913 aa23.69■■□□□ 1.38
VPS28-206ENST00000526734 hCG_1642624A0A1W2PR95 340 aa23.68■■□□□ 1.38
VPS28-206ENST00000526734 PPFIA4O75335 1185 aa23.68■■□□□ 1.38
VPS28-206ENST00000526734 GGPS1O95749 300 aa23.68■■□□□ 1.38
VPS28-206ENST00000526734 CPA1P15085 419 aa23.68■■□□□ 1.38
VPS28-206ENST00000526734 NAPAP54920 295 aa23.68■■□□□ 1.38
VPS28-206ENST00000526734 MRPS9P82933 396 aaKnown RBP23.68■■□□□ 1.38
VPS28-206ENST00000526734 APOBRQ0VD83 1088 aa23.68■■□□□ 1.38
VPS28-206ENST00000526734 NEDD9Q14511 834 aa23.68■■□□□ 1.38
VPS28-206ENST00000526734 FAM47CQ5HY64 1035 aa23.68■■□□□ 1.38
VPS28-206ENST00000526734 WWC2Q6AWC2 1192 aa23.68■■□□□ 1.38
VPS28-206ENST00000526734 RUFY3Q7L099 469 aa23.68■■□□□ 1.38
VPS28-206ENST00000526734 SESTD1Q86VW0 696 aa23.68■■□□□ 1.38
VPS28-206ENST00000526734 GPKOWQ92917 476 aaPredicted RBP eCLIP23.68■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 384.5 ms