RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 KRT25Q7Z3Z0 450 aa23.71■■□□□ 1.39
CD44-222ENST00000526025 FBXO16Q8IX29 292 aaPredicted RBP23.71■■□□□ 1.39
CD44-222ENST00000526025 GJB4Q9NTQ9 266 aa23.71■■□□□ 1.39
CD44-222ENST00000526025 TMEM260Q9NX78 707 aa23.71■■□□□ 1.39
CD44-222ENST00000526025 DDX20Q9UHI6 824 aaKnown RBP23.71■■□□□ 1.39
CD44-222ENST00000526025 ADAMTS3O15072 1205 aa23.7■■□□□ 1.38
CD44-222ENST00000526025 CYP3A4P08684 503 aa23.7■■□□□ 1.38
CD44-222ENST00000526025 MRPS9P82933 396 aaKnown RBP23.7■■□□□ 1.38
CD44-222ENST00000526025 SAFBQ15424 915 aaKnown RBP eCLIP23.7■■□□□ 1.38
CD44-222ENST00000526025 CCDC144BQ3MJ40 725 aa23.7■■□□□ 1.38
CD44-222ENST00000526025 GNPTABQ3T906 1256 aa23.7■■□□□ 1.38
CD44-222ENST00000526025 KCNV1Q6PIU1 500 aa23.7■■□□□ 1.38
CD44-222ENST00000526025 SCFD2Q8WU76 684 aa23.7■■□□□ 1.38
CD44-222ENST00000526025 INPP4AQ96PE3 977 aaPredicted RBP23.7■■□□□ 1.38
CD44-222ENST00000526025 TMEM106CQ9BVX2 250 aa23.7■■□□□ 1.38
CD44-222ENST00000526025 DDX49Q9Y6V7 483 aaKnown RBP23.7■■□□□ 1.38
CD44-222ENST00000526025 MYCLP12524 364 aaPredicted RBP23.69■■□□□ 1.38
CD44-222ENST00000526025 RASGRP4Q8TDF6 673 aa23.69■■□□□ 1.38
CD44-222ENST00000526025 TNFRSF25Q93038 417 aa23.69■■□□□ 1.38
CD44-222ENST00000526025 NKRFO15226 690 aaKnown RBP eCLIP23.68■■□□□ 1.38
CD44-222ENST00000526025 TGFB3P10600 412 aa23.68■■□□□ 1.38
CD44-222ENST00000526025 CNGA1P29973 690 aa23.68■■□□□ 1.38
CD44-222ENST00000526025 ICAM3P32942 547 aa23.68■■□□□ 1.38
CD44-222ENST00000526025 USP11P51784 963 aa23.68■■□□□ 1.38
CD44-222ENST00000526025 ARHGAP4P98171 946 aa23.68■■□□□ 1.38
CD44-222ENST00000526025 TTLL4Q14679 1199 aa23.68■■□□□ 1.38
CD44-222ENST00000526025 EEPD1Q7L9B9 569 aa23.68■■□□□ 1.38
CD44-222ENST00000526025 DIS3L2Q8IYB7 885 aaKnown RBP23.68■■□□□ 1.38
CD44-222ENST00000526025 CRISPLD2Q9H0B8 497 aa23.68■■□□□ 1.38
CD44-222ENST00000526025 Q9Y3F1 56 aa23.68■■□□□ 1.38
CD44-222ENST00000526025 DUSP11O75319 330 aaKnown RBP23.67■■□□□ 1.38
CD44-222ENST00000526025 RGS20O76081 388 aa23.67■■□□□ 1.38
CD44-222ENST00000526025 PDCP20941 246 aa23.67■■□□□ 1.38
CD44-222ENST00000526025 GJA8P48165 433 aa23.67■■□□□ 1.38
CD44-222ENST00000526025 NONOQ15233 471 aaKnown RBP eCLIP23.67■■□□□ 1.38
CD44-222ENST00000526025 DUSP28Q4G0W2 176 aa23.67■■□□□ 1.38
CD44-222ENST00000526025 LHX8Q68G74 356 aa23.67■■□□□ 1.38
CD44-222ENST00000526025 NIPA1Q7RTP0 329 aa23.67■■□□□ 1.38
CD44-222ENST00000526025 GPRASP2Q96D09 838 aa23.67■■□□□ 1.38
CD44-222ENST00000526025 CDHR1Q96JP9 859 aa23.67■■□□□ 1.38
CD44-222ENST00000526025 PGBD1Q96JS3 809 aa23.67■■□□□ 1.38
CD44-222ENST00000526025 FOXP1Q9H334 677 aaPredicted RBP23.67■■□□□ 1.38
CD44-222ENST00000526025 UBIAD1Q9Y5Z9 338 aa23.67■■□□□ 1.38
CD44-222ENST00000526025 CCDC194A0A1B0GVG4 234 aa23.66■■□□□ 1.38
CD44-222ENST00000526025 MAFGO15525 162 aa23.66■■□□□ 1.38
CD44-222ENST00000526025 SGPL1O95470 568 aa23.66■■□□□ 1.38
CD44-222ENST00000526025 RARBP10826 455 aa23.66■■□□□ 1.38
CD44-222ENST00000526025 CIITAP33076 1130 aa23.66■■□□□ 1.38
CD44-222ENST00000526025 NKX3-2P78367 333 aa23.66■■□□□ 1.38
CD44-222ENST00000526025 TNFAIP2Q03169 654 aa23.66■■□□□ 1.38
CD44-222ENST00000526025 BECN1Q14457 450 aa23.66■■□□□ 1.38
CD44-222ENST00000526025 CCDC62Q6P9F0 684 aa23.66■■□□□ 1.38
CD44-222ENST00000526025 NLRX1Q86UT6 975 aa23.66■■□□□ 1.38
CD44-222ENST00000526025 OXER1Q8TDS5 423 aa23.66■■□□□ 1.38
CD44-222ENST00000526025 WDR11Q9BZH6 1224 aa23.66■■□□□ 1.38
CD44-222ENST00000526025 PDGFCQ9NRA1 345 aa23.66■■□□□ 1.38
CD44-222ENST00000526025 GNEQ9Y223 722 aaKnown RBP23.66■■□□□ 1.38
CD44-222ENST00000526025 FIBPO43427 364 aa23.65■■□□□ 1.38
CD44-222ENST00000526025 ADCYAP1R1P41586 468 aa23.65■■□□□ 1.38
CD44-222ENST00000526025 CEP55Q53EZ4 464 aa23.65■■□□□ 1.38
CD44-222ENST00000526025 MOXD1Q6UVY6 613 aa23.65■■□□□ 1.38
CD44-222ENST00000526025 U2AF1L4Q8WU68 220 aaKnown RBP23.65■■□□□ 1.38
CD44-222ENST00000526025 DEFB118Q96PH6 123 aa23.65■■□□□ 1.38
CD44-222ENST00000526025 JADE2Q9NQC1 790 aa23.65■■□□□ 1.38
CD44-222ENST00000526025 OGDHLQ9ULD0 1010 aa23.65■■□□□ 1.38
CD44-222ENST00000526025 BTBD18B2RXH4 712 aa23.64■■□□□ 1.37
CD44-222ENST00000526025 SPATA31C2B4DYI2 1134 aa23.64■■□□□ 1.37
CD44-222ENST00000526025 SMPD1P17405 629 aa23.64■■□□□ 1.37
CD44-222ENST00000526025 FOSBP53539 338 aa23.64■■□□□ 1.37
CD44-222ENST00000526025 LARP1BQ659C4 914 aaKnown RBP23.64■■□□□ 1.37
CD44-222ENST00000526025 SEPT14Q6ZU15 432 aa23.64■■□□□ 1.37
CD44-222ENST00000526025 TBCKQ8TEA7 893 aa23.64■■□□□ 1.37
CD44-222ENST00000526025 MXRA8Q9BRK3 442 aa23.64■■□□□ 1.37
CD44-222ENST00000526025 UPF3AQ9H1J1 476 aaKnown RBP23.64■■□□□ 1.37
CD44-222ENST00000526025 MRVI1Q9Y6F6 885 aa23.64■■□□□ 1.37
CD44-222ENST00000526025 C11orf97A0A1B0GVM6 126 aaPredicted RBP23.63■■□□□ 1.37
CD44-222ENST00000526025 MEIS1O00470 390 aa23.63■■□□□ 1.37
CD44-222ENST00000526025 ADCY6O43306 1168 aa23.63■■□□□ 1.37
CD44-222ENST00000526025 MYCP01106 439 aaPredicted RBP23.63■■□□□ 1.37
CD44-222ENST00000526025 PDIA4P13667 645 aaKnown RBP23.63■■□□□ 1.37
CD44-222ENST00000526025 ITGB5P18084 799 aa23.63■■□□□ 1.37
CD44-222ENST00000526025 U2AF2P26368 475 aaKnown RBP eCLIP23.63■■□□□ 1.37
CD44-222ENST00000526025 GUCY1B3Q02153 619 aa23.63■■□□□ 1.37
CD44-222ENST00000526025 NR5A1Q13285 461 aa23.63■■□□□ 1.37
CD44-222ENST00000526025 ANKLE1Q8NAG6 615 aa23.63■■□□□ 1.37
CD44-222ENST00000526025 NAP1L4Q99733 375 aaKnown RBP23.63■■□□□ 1.37
CD44-222ENST00000526025 SENP7Q9BQF6 1050 aa23.63■■□□□ 1.37
CD44-222ENST00000526025 DDX41Q9UJV9 622 aaKnown RBP23.63■■□□□ 1.37
CD44-222ENST00000526025 CYP3A7-CYP3A51PA0A087WV96 503 aa23.62■■□□□ 1.37
CD44-222ENST00000526025 H3BQV1 296 aa23.62■■□□□ 1.37
CD44-222ENST00000526025 HSP90AA1P07900 732 aaKnown RBP23.62■■□□□ 1.37
CD44-222ENST00000526025 TXNP10599 105 aaKnown RBP23.62■■□□□ 1.37
CD44-222ENST00000526025 CYP3A7P24462 503 aa23.62■■□□□ 1.37
CD44-222ENST00000526025 ZNF76P36508 570 aa23.62■■□□□ 1.37
CD44-222ENST00000526025 GJA9P57773 515 aa23.62■■□□□ 1.37
CD44-222ENST00000526025 SETQ01105 290 aaPredicted RBP23.62■■□□□ 1.37
CD44-222ENST00000526025 IFFO2Q5TF58 517 aa23.62■■□□□ 1.37
CD44-222ENST00000526025 PIK3AP1Q6ZUJ8 805 aa23.62■■□□□ 1.37
CD44-222ENST00000526025 EMID1Q96A84 441 aaPredicted RBP23.62■■□□□ 1.37
CD44-222ENST00000526025 XPNPEP3Q9NQH7 507 aa23.62■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms