RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 PSMA5P28066 241 aa24.11■■□□□ 1.45
VPS28-203ENST00000524521 CCND2P30279 289 aa24.11■■□□□ 1.45
VPS28-203ENST00000524521 USP17L6PQ6QN14 398 aa24.11■■□□□ 1.45
VPS28-203ENST00000524521 SLC43A3Q8NBI5 491 aa24.11■■□□□ 1.45
VPS28-203ENST00000524521 IL31RAQ8NI17 732 aa24.11■■□□□ 1.45
VPS28-203ENST00000524521 SMARCC2Q8TAQ2 1214 aa24.11■■□□□ 1.45
VPS28-203ENST00000524521 ZFP91Q96JP5 570 aaPredicted RBP24.11■■□□□ 1.45
VPS28-203ENST00000524521 MRVI1Q9Y6F6 885 aa24.11■■□□□ 1.45
VPS28-203ENST00000524521 GRIN2DO15399 1336 aa24.1■■□□□ 1.45
VPS28-203ENST00000524521 A6NJR5 290 aa24.1■■□□□ 1.45
VPS28-203ENST00000524521 EPB41L2O43491 1005 aaKnown RBP24.1■■□□□ 1.45
VPS28-203ENST00000524521 PURAQ00577 322 aaKnown RBP24.1■■□□□ 1.45
VPS28-203ENST00000524521 APOBRQ0VD83 1088 aa24.1■■□□□ 1.45
VPS28-203ENST00000524521 FAM126BQ8IXS8 530 aa24.1■■□□□ 1.45
VPS28-203ENST00000524521 USP26Q9BXU7 913 aa24.1■■□□□ 1.45
VPS28-203ENST00000524521 DDX41Q9UJV9 622 aaKnown RBP24.1■■□□□ 1.45
VPS28-203ENST00000524521 KIAA1217Q5T5P2 1943 aa24.1■■□□□ 1.45
VPS28-203ENST00000524521 KPNA6O60684 536 aa24.09■■□□□ 1.45
VPS28-203ENST00000524521 CASTP20810 708 aaKnown RBP24.09■■□□□ 1.45
VPS28-203ENST00000524521 RPS6KB1P23443 525 aa24.09■■□□□ 1.45
VPS28-203ENST00000524521 AFG1LQ8WV93 481 aa24.09■■□□□ 1.45
VPS28-203ENST00000524521 BRF1Q92994 677 aa24.09■■□□□ 1.45
VPS28-203ENST00000524521 MTG1Q9BT17 334 aaPredicted RBP24.09■■□□□ 1.45
VPS28-203ENST00000524521 SEZ6LQ9BYH1 1024 aa24.09■■□□□ 1.45
VPS28-203ENST00000524521 PSTPIP2Q9H939 334 aa24.09■■□□□ 1.45
VPS28-203ENST00000524521 LTBP2Q14767 1821 aa24.09■■□□□ 1.45
VPS28-203ENST00000524521 SOX1O00570 391 aaPredicted RBP24.08■■□□□ 1.45
VPS28-203ENST00000524521 MEIS2O14770 477 aa24.08■■□□□ 1.45
VPS28-203ENST00000524521 RGS20O76081 388 aa24.08■■□□□ 1.45
VPS28-203ENST00000524521 ARHGAP1Q07960 439 aa24.08■■□□□ 1.45
VPS28-203ENST00000524521 HEATR3Q7Z4Q2 680 aa24.08■■□□□ 1.45
VPS28-203ENST00000524521 TBX21Q9UL17 535 aa24.08■■□□□ 1.45
VPS28-203ENST00000524521 V9GY48 417 aaPredicted RBP24.08■■□□□ 1.45
VPS28-203ENST00000524521 PIK3CDO00329 1044 aa24.07■■□□□ 1.44
VPS28-203ENST00000524521 TIMP1P01033 207 aa24.07■■□□□ 1.44
VPS28-203ENST00000524521 CD4P01730 458 aa24.07■■□□□ 1.44
VPS28-203ENST00000524521 CDC27P30260 824 aa24.07■■□□□ 1.44
VPS28-203ENST00000524521 KCNV1Q6PIU1 500 aa24.07■■□□□ 1.44
VPS28-203ENST00000524521 GPKOWQ92917 476 aaPredicted RBP eCLIP24.07■■□□□ 1.44
VPS28-203ENST00000524521 FAM217BQ9NTX9 383 aaPredicted RBP24.07■■□□□ 1.44
VPS28-203ENST00000524521 CNTNAP5Q8WYK1 1306 aa24.07■■□□□ 1.44
VPS28-203ENST00000524521 ADD1P35611 737 aaKnown RBP24.06■■□□□ 1.44
VPS28-203ENST00000524521 METAP2P50579 478 aaKnown RBP eCLIP24.06■■□□□ 1.44
VPS28-203ENST00000524521 RCAN1P53805 252 aa24.06■■□□□ 1.44
VPS28-203ENST00000524521 FUT2Q10981 343 aa24.06■■□□□ 1.44
VPS28-203ENST00000524521 DHX37Q8IY37 1157 aaKnown RBP24.06■■□□□ 1.44
VPS28-203ENST00000524521 LRCH3Q96II8 777 aa24.06■■□□□ 1.44
VPS28-203ENST00000524521 TRPV6Q9H1D0 765 aa24.06■■□□□ 1.44
VPS28-203ENST00000524521 MMP3P08254 477 aa24.05■■□□□ 1.44
VPS28-203ENST00000524521 CHMP4BP1P59074 171 aa24.05■■□□□ 1.44
VPS28-203ENST00000524521 LAMC2Q13753 1193 aa24.05■■□□□ 1.44
VPS28-203ENST00000524521 NBPF20Q3BBV1 942 aa24.05■■□□□ 1.44
VPS28-203ENST00000524521 LRIT3Q3SXY7 679 aa24.05■■□□□ 1.44
VPS28-203ENST00000524521 PPP1R12CQ9BZL4 782 aa24.05■■□□□ 1.44
VPS28-203ENST00000524521 RTEL1Q9NZ71 1219 aa24.05■■□□□ 1.44
VPS28-203ENST00000524521 RANBP2P49792 3224 aaKnown RBP24.05■■□□□ 1.44
VPS28-203ENST00000524521 CCDC196A0A1B0GTZ2 297 aa24.04■■□□□ 1.44
VPS28-203ENST00000524521 SORBS3O60504 671 aa24.04■■□□□ 1.44
VPS28-203ENST00000524521 B4GALT4O60513 344 aa24.04■■□□□ 1.44
VPS28-203ENST00000524521 TGFB3P10600 412 aa24.04■■□□□ 1.44
VPS28-203ENST00000524521 MRPS9P82933 396 aaKnown RBP24.04■■□□□ 1.44
VPS28-203ENST00000524521 FPGSQ05932 587 aa24.04■■□□□ 1.44
VPS28-203ENST00000524521 SHHQ15465 462 aa24.04■■□□□ 1.44
VPS28-203ENST00000524521 UBE2SQ16763 222 aa24.04■■□□□ 1.44
VPS28-203ENST00000524521 FAM47CQ5HY64 1035 aa24.04■■□□□ 1.44
VPS28-203ENST00000524521 WWC2Q6AWC2 1192 aa24.04■■□□□ 1.44
VPS28-203ENST00000524521 RUFY3Q7L099 469 aa24.04■■□□□ 1.44
VPS28-203ENST00000524521 FBXL16Q8N461 479 aa24.04■■□□□ 1.44
VPS28-203ENST00000524521 PPP1R13LQ8WUF5 828 aa24.04■■□□□ 1.44
VPS28-203ENST00000524521 ALDH8A1Q9H2A2 487 aaPredicted RBP24.04■■□□□ 1.44
VPS28-203ENST00000524521 FRMPD4Q14CM0 1322 aa24.04■■□□□ 1.44
VPS28-203ENST00000524521 STAM2O75886 525 aa24.03■■□□□ 1.44
VPS28-203ENST00000524521 NAPAP54920 295 aa24.03■■□□□ 1.44
VPS28-203ENST00000524521 SP2Q02086 613 aa24.03■■□□□ 1.44
VPS28-203ENST00000524521 DGKDQ16760 1214 aa24.03■■□□□ 1.44
VPS28-203ENST00000524521 GNPTABQ3T906 1256 aa24.03■■□□□ 1.44
VPS28-203ENST00000524521 C9orf50Q5SZB4 431 aa24.03■■□□□ 1.44
VPS28-203ENST00000524521 MFSD5Q6N075 450 aa24.03■■□□□ 1.44
VPS28-203ENST00000524521 EMID1Q96A84 441 aaPredicted RBP24.03■■□□□ 1.44
VPS28-203ENST00000524521 AGXT2Q9BYV1 514 aa24.03■■□□□ 1.44
VPS28-203ENST00000524521 ZSWIM6Q9HCJ5 1215 aa24.03■■□□□ 1.44
VPS28-203ENST00000524521 CYP46A1Q9Y6A2 500 aa24.03■■□□□ 1.44
VPS28-203ENST00000524521 GGPS1O95749 300 aa24.02■■□□□ 1.44
VPS28-203ENST00000524521 EPHB4P54760 987 aa24.02■■□□□ 1.44
VPS28-203ENST00000524521 CELF3Q5SZQ8 465 aaKnown RBP24.02■■□□□ 1.44
VPS28-203ENST00000524521 MYSM1Q5VVJ2 828 aa24.02■■□□□ 1.44
VPS28-203ENST00000524521 PCNX4Q63HM2 1172 aa24.02■■□□□ 1.44
VPS28-203ENST00000524521 MYH7BA7E2Y1 1941 aa24.02■■□□□ 1.44
VPS28-203ENST00000524521 SPDYE3A6NKU9 549 aa24.01■■□□□ 1.43
VPS28-203ENST00000524521 CYP2C18P33260 490 aa24.01■■□□□ 1.43
VPS28-203ENST00000524521 XRRA1Q6P2D8 792 aa24.01■■□□□ 1.43
VPS28-203ENST00000524521 TMEM199Q8N511 208 aa24.01■■□□□ 1.43
VPS28-203ENST00000524521 PPTC7Q8NI37 304 aa24.01■■□□□ 1.43
VPS28-203ENST00000524521 SPATA33Q96N06 139 aa24.01■■□□□ 1.43
VPS28-203ENST00000524521 INPP4AQ96PE3 977 aaPredicted RBP24.01■■□□□ 1.43
VPS28-203ENST00000524521 HIPK3Q9H422 1215 aa24.01■■□□□ 1.43
VPS28-203ENST00000524521 MLXIPQ9HAP2 919 aa24.01■■□□□ 1.43
VPS28-203ENST00000524521 TRMT13Q9NUP7 481 aaKnown RBP24.01■■□□□ 1.43
VPS28-203ENST00000524521 SUPT20HL2P0C7V6 817 aa24■■□□□ 1.43
VPS28-203ENST00000524521 UBA1P22314 1058 aaKnown RBP24■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms