RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 LRIT3Q3SXY7 679 aa18.75■□□□□ 0.59
LSM1-205ENST00000523511 CCDC62Q6P9F0 684 aa18.75■□□□□ 0.59
LSM1-205ENST00000523511 Q6ZUG5 572 aa18.75■□□□□ 0.59
LSM1-205ENST00000523511 CMTR1Q8N1G2 835 aaKnown RBP18.75■□□□□ 0.59
LSM1-205ENST00000523511 FBXL16Q8N461 479 aa18.75■□□□□ 0.59
LSM1-205ENST00000523511 TMEM199Q8N511 208 aa18.75■□□□□ 0.59
LSM1-205ENST00000523511 ZNF713Q8N859 430 aaPredicted RBP18.75■□□□□ 0.59
LSM1-205ENST00000523511 SLC43A3Q8NBI5 491 aa18.75■□□□□ 0.59
LSM1-205ENST00000523511 TRIM43Q96BQ3 446 aaPredicted RBP18.75■□□□□ 0.59
LSM1-205ENST00000523511 TCEANC2Q96MN5 208 aa18.75■□□□□ 0.59
LSM1-205ENST00000523511 DDX41Q9UJV9 622 aaKnown RBP18.75■□□□□ 0.59
LSM1-205ENST00000523511 SPDYE3A6NKU9 549 aa18.74■□□□□ 0.59
LSM1-205ENST00000523511 RPS6KB1P23443 525 aa18.74■□□□□ 0.59
LSM1-205ENST00000523511 METAP2P50579 478 aaKnown RBP eCLIP18.74■□□□□ 0.59
LSM1-205ENST00000523511 AKAP17AQ02040 695 aaKnown RBP18.74■□□□□ 0.59
LSM1-205ENST00000523511 DGKDQ16760 1214 aa18.74■□□□□ 0.59
LSM1-205ENST00000523511 TMEM63BQ5T3F8 832 aa18.74■□□□□ 0.59
LSM1-205ENST00000523511 HEATR3Q7Z4Q2 680 aa18.74■□□□□ 0.59
LSM1-205ENST00000523511 SH3RF1Q7Z6J0 888 aa18.74■□□□□ 0.59
LSM1-205ENST00000523511 RAB11FIP4Q86YS3 637 aa18.74■□□□□ 0.59
LSM1-205ENST00000523511 CYP46A1Q9Y6A2 500 aa18.74■□□□□ 0.59
LSM1-205ENST00000523511 FRMPD3Q5JV73 1810 aa18.74■□□□□ 0.59
LSM1-205ENST00000523511 FPGSQ05932 587 aa18.73■□□□□ 0.59
LSM1-205ENST00000523511 PTPN11Q06124 597 aaPredicted RBP18.73■□□□□ 0.59
LSM1-205ENST00000523511 NLRX1Q86UT6 975 aa18.73■□□□□ 0.59
LSM1-205ENST00000523511 FAM126BQ8IXS8 530 aa18.73■□□□□ 0.59
LSM1-205ENST00000523511 BRF1Q92994 677 aa18.73■□□□□ 0.59
LSM1-205ENST00000523511 EMID1Q96A84 441 aaPredicted RBP18.73■□□□□ 0.59
LSM1-205ENST00000523511 KATNAL1Q9BW62 490 aa18.73■□□□□ 0.59
LSM1-205ENST00000523511 USP26Q9BXU7 913 aa18.73■□□□□ 0.59
LSM1-205ENST00000523511 MLXIPQ9HAP2 919 aa18.73■□□□□ 0.59
LSM1-205ENST00000523511 BRPF3Q9ULD4 1205 aa18.73■□□□□ 0.59
LSM1-205ENST00000523511 V9GY48 417 aaPredicted RBP18.73■□□□□ 0.59
LSM1-205ENST00000523511 SMCHD1A6NHR9 2005 aa18.73■□□□□ 0.59
LSM1-205ENST00000523511 PPFIA4O75335 1185 aa18.72■□□□□ 0.59
LSM1-205ENST00000523511 ARIH2O95376 493 aa18.72■□□□□ 0.59
LSM1-205ENST00000523511 PPIGQ13427 754 aaKnown RBP eCLIP18.72■□□□□ 0.59
LSM1-205ENST00000523511 NEDD9Q14511 834 aa18.72■□□□□ 0.59
LSM1-205ENST00000523511 MFSD5Q6N075 450 aa18.72■□□□□ 0.59
LSM1-205ENST00000523511 GPR153Q6NV75 609 aa18.72■□□□□ 0.59
LSM1-205ENST00000523511 PPP1R18Q6NYC8 613 aa18.72■□□□□ 0.59
LSM1-205ENST00000523511 NFRKBQ6P4R8 1299 aa18.72■□□□□ 0.59
LSM1-205ENST00000523511 USP17L6PQ6QN14 398 aa18.72■□□□□ 0.59
LSM1-205ENST00000523511 RUFY3Q7L099 469 aa18.72■□□□□ 0.59
LSM1-205ENST00000523511 GIMAP8Q8ND71 665 aaPredicted RBP18.72■□□□□ 0.59
LSM1-205ENST00000523511 AFG1LQ8WV93 481 aa18.72■□□□□ 0.59
LSM1-205ENST00000523511 COPS5Q92905 334 aa18.72■□□□□ 0.59
LSM1-205ENST00000523511 CDHR1Q96JP9 859 aa18.72■□□□□ 0.59
LSM1-205ENST00000523511 CD4P01730 458 aa18.71■□□□□ 0.59
LSM1-205ENST00000523511 NAPAP54920 295 aa18.71■□□□□ 0.59
LSM1-205ENST00000523511 COL9A3Q14050 684 aaPredicted RBP18.71■□□□□ 0.59
LSM1-205ENST00000523511 FAM47CQ5HY64 1035 aa18.71■□□□□ 0.59
LSM1-205ENST00000523511 PCNX4Q63HM2 1172 aa18.71■□□□□ 0.59
LSM1-205ENST00000523511 PPTC7Q8NI37 304 aa18.71■□□□□ 0.59
LSM1-205ENST00000523511 CCDC12Q8WUD4 166 aaPredicted RBP18.71■□□□□ 0.59
LSM1-205ENST00000523511 TM6SF1Q9BZW5 370 aa18.71■□□□□ 0.59
LSM1-205ENST00000523511 ALDH8A1Q9H2A2 487 aaPredicted RBP18.71■□□□□ 0.59
LSM1-205ENST00000523511 TBX21Q9UL17 535 aa18.71■□□□□ 0.59
LSM1-205ENST00000523511 NOD1Q9Y239 953 aa18.71■□□□□ 0.59
LSM1-205ENST00000523511 MEIS2O14770 477 aa18.7■□□□□ 0.58
LSM1-205ENST00000523511 MAFGO15525 162 aa18.7■□□□□ 0.58
LSM1-205ENST00000523511 FIBPO43427 364 aa18.7■□□□□ 0.58
LSM1-205ENST00000523511 FOSP01100 380 aaPredicted RBP18.7■□□□□ 0.58
LSM1-205ENST00000523511 MMP3P08254 477 aa18.7■□□□□ 0.58
LSM1-205ENST00000523511 PSMC6P62333 389 aa18.7■□□□□ 0.58
LSM1-205ENST00000523511 ARHGAP1Q07960 439 aa18.7■□□□□ 0.58
LSM1-205ENST00000523511 APOBRQ0VD83 1088 aa18.7■□□□□ 0.58
LSM1-205ENST00000523511 CELF3Q5SZQ8 465 aaKnown RBP18.7■□□□□ 0.58
LSM1-205ENST00000523511 MCTP2Q6DN12 878 aa18.7■□□□□ 0.58
LSM1-205ENST00000523511 SPATA33Q96N06 139 aa18.7■□□□□ 0.58
LSM1-205ENST00000523511 HIPK3Q9H422 1215 aa18.7■□□□□ 0.58
LSM1-205ENST00000523511 ZSWIM6Q9HCJ5 1215 aa18.7■□□□□ 0.58
LSM1-205ENST00000523511 hCG_1642624A0A1W2PR95 340 aa18.69■□□□□ 0.58
LSM1-205ENST00000523511 CPA1P15085 419 aa18.69■□□□□ 0.58
LSM1-205ENST00000523511 PTGS1P23219 599 aa18.69■□□□□ 0.58
LSM1-205ENST00000523511 ICAM3P32942 547 aa18.69■□□□□ 0.58
LSM1-205ENST00000523511 CHMP4BP1P59074 171 aa18.69■□□□□ 0.58
LSM1-205ENST00000523511 NBPF20Q3BBV1 942 aa18.69■□□□□ 0.58
LSM1-205ENST00000523511 CPLX2Q6PUV4 134 aaKnown RBP18.69■□□□□ 0.58
LSM1-205ENST00000523511 RPUSD2Q8IZ73 545 aaKnown RBP18.69■□□□□ 0.58
LSM1-205ENST00000523511 RTEL1Q9NZ71 1219 aa18.69■□□□□ 0.58
LSM1-205ENST00000523511 SMCO2A6NFE2 343 aa18.68■□□□□ 0.58
LSM1-205ENST00000523511 SPATA31C2B4DYI2 1134 aa18.68■□□□□ 0.58
LSM1-205ENST00000523511 NOP56O00567 594 aaKnown RBP18.68■□□□□ 0.58
LSM1-205ENST00000523511 GGPS1O95749 300 aa18.68■□□□□ 0.58
LSM1-205ENST00000523511 ADD1P35611 737 aaKnown RBP18.68■□□□□ 0.58
LSM1-205ENST00000523511 ADCY7P51828 1080 aa18.68■□□□□ 0.58
LSM1-205ENST00000523511 MYSM1Q5VVJ2 828 aa18.68■□□□□ 0.58
LSM1-205ENST00000523511 CCDC155Q8N6L0 562 aa18.68■□□□□ 0.58
LSM1-205ENST00000523511 C7orf31Q8N865 590 aa18.68■□□□□ 0.58
LSM1-205ENST00000523511 RETREG2Q8NC44 543 aa18.68■□□□□ 0.58
LSM1-205ENST00000523511 INPP4AQ96PE3 977 aaPredicted RBP18.68■□□□□ 0.58
LSM1-205ENST00000523511 SENP7Q9BQF6 1050 aa18.68■□□□□ 0.58
LSM1-205ENST00000523511 AGXT2Q9BYV1 514 aa18.68■□□□□ 0.58
LSM1-205ENST00000523511 TRPV6Q9H1D0 765 aa18.68■□□□□ 0.58
LSM1-205ENST00000523511 MTIF3Q9H2K0 278 aaKnown RBP18.68■□□□□ 0.58
LSM1-205ENST00000523511 RIC8AQ9NPQ8 531 aa18.68■□□□□ 0.58
LSM1-205ENST00000523511 BARHL2Q9NY43 387 aa18.68■□□□□ 0.58
LSM1-205ENST00000523511 PCDHA6Q9UN73 950 aa18.68■□□□□ 0.58
LSM1-205ENST00000523511 PCDHA8Q9Y5H6 950 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms