RNA–Protein interactions for RNA: ENST00000520579.5

PDGFRB-207, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 1 (best)

Gene PDGFRB, Length 3,860 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-207ENST00000520579 PHF8Q9UPP1 1060 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 LEMD3Q9Y2U8 911 aa11.1□□□□□ -0.63
PDGFRB-207ENST00000520579 FSBPO95073 299 aa11.09□□□□□ -0.63
PDGFRB-207ENST00000520579 RTN3O95197 1032 aaPredicted RBP11.09□□□□□ -0.63
PDGFRB-207ENST00000520579 PAPD7Q5XG87 772 aaKnown RBP11.09□□□□□ -0.63
PDGFRB-207ENST00000520579 RNF168Q8IYW5 571 aaPredicted RBP11.09□□□□□ -0.63
PDGFRB-207ENST00000520579 WHAMMQ8TF30 809 aa11.09□□□□□ -0.63
PDGFRB-207ENST00000520579 ATP6V1G3Q96LB4 118 aa11.09□□□□□ -0.63
PDGFRB-207ENST00000520579 UNC45AQ9H3U1 944 aa11.09□□□□□ -0.63
PDGFRB-207ENST00000520579 ATP8A1Q9Y2Q0 1164 aa11.09□□□□□ -0.63
PDGFRB-207ENST00000520579 PALMO75781 387 aa11.09□□□□□ -0.63
PDGFRB-207ENST00000520579 HOXB7P09629 217 aa11.09□□□□□ -0.63
PDGFRB-207ENST00000520579 FOXD4Q12950 439 aaPredicted RBP11.09□□□□□ -0.63
PDGFRB-207ENST00000520579 IFIT5Q13325 482 aaKnown RBP11.09□□□□□ -0.63
PDGFRB-207ENST00000520579 OTUD6AQ7L8S5 288 aa11.09□□□□□ -0.63
PDGFRB-207ENST00000520579 CCDC25Q86WR0 208 aa11.09□□□□□ -0.63
PDGFRB-207ENST00000520579 FANCBQ8NB91 859 aa11.09□□□□□ -0.63
PDGFRB-207ENST00000520579 CTNNBL1Q8WYA6 563 aaPredicted RBP11.09□□□□□ -0.63
PDGFRB-207ENST00000520579 GSDMAQ96QA5 445 aa11.09□□□□□ -0.63
PDGFRB-207ENST00000520579 LRRC4CQ9HCJ2 640 aa11.09□□□□□ -0.63
PDGFRB-207ENST00000520579 ANKRD26Q9UPS8 1709 aa11.09□□□□□ -0.63
PDGFRB-207ENST00000520579 H0Y3Z8 333 aa11.09□□□□□ -0.63
PDGFRB-207ENST00000520579 NMT2O60551 498 aa11.09□□□□□ -0.63
PDGFRB-207ENST00000520579 DEXIO95424 95 aa11.09□□□□□ -0.63
PDGFRB-207ENST00000520579 PDE6AP16499 860 aa11.09□□□□□ -0.63
PDGFRB-207ENST00000520579 GJA8P48165 433 aa11.09□□□□□ -0.63
PDGFRB-207ENST00000520579 SESN3P58005 492 aa11.09□□□□□ -0.63
PDGFRB-207ENST00000520579 RAPGEF1Q13905 1077 aa11.09□□□□□ -0.63
PDGFRB-207ENST00000520579 SOGA3Q5TF21 947 aa11.09□□□□□ -0.63
PDGFRB-207ENST00000520579 SPICE1Q8N0Z3 855 aa11.09□□□□□ -0.63
PDGFRB-207ENST00000520579 IP6K1Q92551 441 aa11.09□□□□□ -0.63
PDGFRB-207ENST00000520579 MTMR8Q96EF0 704 aa11.09□□□□□ -0.63
PDGFRB-207ENST00000520579 CENPOQ9BU64 300 aa11.09□□□□□ -0.63
PDGFRB-207ENST00000520579 DIP2CQ9Y2E4 1556 aa11.08□□□□□ -0.64
PDGFRB-207ENST00000520579 TARSL2A2RTX5 802 aaKnown RBP11.08□□□□□ -0.64
PDGFRB-207ENST00000520579 RAD51CO43502 376 aa11.08□□□□□ -0.64
PDGFRB-207ENST00000520579 FAM47AQ5JRC9 791 aa11.08□□□□□ -0.64
PDGFRB-207ENST00000520579 GKAP1Q5VSY0 366 aaPredicted RBP11.08□□□□□ -0.64
PDGFRB-207ENST00000520579 IFNL3Q8IZI9 196 aa11.08□□□□□ -0.64
PDGFRB-207ENST00000520579 CRACR2BQ8N4Y2 399 aaPredicted RBP11.08□□□□□ -0.64
PDGFRB-207ENST00000520579 TRIM58Q8NG06 486 aa11.08□□□□□ -0.64
PDGFRB-207ENST00000520579 CELF4Q9BZC1 486 aaKnown RBP11.08□□□□□ -0.64
PDGFRB-207ENST00000520579 CPVLQ9H3G5 476 aa11.08□□□□□ -0.64
PDGFRB-207ENST00000520579 AATFQ9NY61 560 aaKnown RBP eCLIP11.08□□□□□ -0.64
PDGFRB-207ENST00000520579 LRP2BPQ9P2M1 347 aa11.08□□□□□ -0.64
PDGFRB-207ENST00000520579 STK24Q9Y6E0 443 aa11.08□□□□□ -0.64
PDGFRB-207ENST00000520579 LGALS16A8MUM7 142 aa11.08□□□□□ -0.64
PDGFRB-207ENST00000520579 RTN2O75298 545 aa11.08□□□□□ -0.64
PDGFRB-207ENST00000520579 FOXO4P98177 505 aa11.08□□□□□ -0.64
PDGFRB-207ENST00000520579 KBTBD12Q3ZCT8 623 aa11.08□□□□□ -0.64
PDGFRB-207ENST00000520579 CFAP221Q4G0U5 840 aa11.08□□□□□ -0.64
PDGFRB-207ENST00000520579 SPIRE2Q8WWL2 714 aa11.08□□□□□ -0.64
PDGFRB-207ENST00000520579 RAPGEF5Q92565 580 aa11.08□□□□□ -0.64
PDGFRB-207ENST00000520579 PPP1R12CQ9BZL4 782 aa11.08□□□□□ -0.64
PDGFRB-207ENST00000520579 VAT1LQ9HCJ6 419 aa11.08□□□□□ -0.64
PDGFRB-207ENST00000520579 CNOT8Q9UFF9 292 aaKnown RBP11.08□□□□□ -0.64
PDGFRB-207ENST00000520579 FRMD4BQ9Y2L6 1034 aa11.08□□□□□ -0.64
PDGFRB-207ENST00000520579 AXIN2Q9Y2T1 843 aa11.08□□□□□ -0.64
PDGFRB-207ENST00000520579 LRRC53A6NM62 1247 aa11.08□□□□□ -0.64
PDGFRB-207ENST00000520579 ANP32DO95626 131 aa11.08□□□□□ -0.64
PDGFRB-207ENST00000520579 SNRPA1P09661 255 aaKnown RBP11.08□□□□□ -0.64
PDGFRB-207ENST00000520579 FLT3P36888 993 aa11.08□□□□□ -0.64
PDGFRB-207ENST00000520579 CD151P48509 253 aa11.08□□□□□ -0.64
PDGFRB-207ENST00000520579 MRPL12P52815 198 aaKnown RBP11.08□□□□□ -0.64
PDGFRB-207ENST00000520579 TMEM62Q0P6H9 643 aa11.08□□□□□ -0.64
PDGFRB-207ENST00000520579 SDCCAG8Q86SQ7 713 aaPredicted RBP11.08□□□□□ -0.64
PDGFRB-207ENST00000520579 IRF2BP1Q8IU81 584 aa11.08□□□□□ -0.64
PDGFRB-207ENST00000520579 PAPOLBQ9NRJ5 636 aaKnown RBP11.08□□□□□ -0.64
PDGFRB-207ENST00000520579 LIMA1Q9UHB6 759 aaKnown RBP11.08□□□□□ -0.64
PDGFRB-207ENST00000520579 FBXL5Q9UKA1 691 aa11.08□□□□□ -0.64
PDGFRB-207ENST00000520579 PNMA2Q9UL42 364 aa11.08□□□□□ -0.64
PDGFRB-207ENST00000520579 ZSCAN9O15535 394 aaPredicted RBP11.07□□□□□ -0.64
PDGFRB-207ENST00000520579 FAM107AO95990 144 aa11.07□□□□□ -0.64
PDGFRB-207ENST00000520579 GNAT1P11488 350 aa11.07□□□□□ -0.64
PDGFRB-207ENST00000520579 PAPOLAP51003 745 aaKnown RBP11.07□□□□□ -0.64
PDGFRB-207ENST00000520579 EMBQ6PCB8 327 aa11.07□□□□□ -0.64
PDGFRB-207ENST00000520579 OLFML1Q6UWY5 402 aa11.07□□□□□ -0.64
PDGFRB-207ENST00000520579 ANKRD42Q8N9B4 389 aa11.07□□□□□ -0.64
PDGFRB-207ENST00000520579 A1CFQ9NQ94 594 aaKnown RBP11.07□□□□□ -0.64
PDGFRB-207ENST00000520579 SEPT11Q9NVA2 429 aaKnown RBP11.07□□□□□ -0.64
PDGFRB-207ENST00000520579 DNAJC17Q9NVM6 304 aaKnown RBP11.07□□□□□ -0.64
PDGFRB-207ENST00000520579 RWDD2AQ9UIY3 292 aa11.07□□□□□ -0.64
PDGFRB-207ENST00000520579 TRIM33Q9UPN9 1127 aa11.07□□□□□ -0.64
PDGFRB-207ENST00000520579 XRN1Q8IZH2 1706 aaKnown RBP11.07□□□□□ -0.64
PDGFRB-207ENST00000520579 ANKRD20A8PQ5CZ79 823 aa11.07□□□□□ -0.64
PDGFRB-207ENST00000520579 ALS2CLQ60I27 953 aa11.07□□□□□ -0.64
PDGFRB-207ENST00000520579 DDX17Q92841 729 aaKnown RBP11.07□□□□□ -0.64
PDGFRB-207ENST00000520579 PACSIN1Q9BY11 444 aa11.07□□□□□ -0.64
PDGFRB-207ENST00000520579 NACA2Q9H009 215 aa11.07□□□□□ -0.64
PDGFRB-207ENST00000520579 TACC3Q9Y6A5 838 aa11.07□□□□□ -0.64
PDGFRB-207ENST00000520579 DAPK3O43293 454 aa11.07□□□□□ -0.64
PDGFRB-207ENST00000520579 EVI5O60447 810 aa11.07□□□□□ -0.64
PDGFRB-207ENST00000520579 IFNAR1P17181 557 aa11.07□□□□□ -0.64
PDGFRB-207ENST00000520579 MIPOL1Q8TD10 442 aa11.07□□□□□ -0.64
PDGFRB-207ENST00000520579 RPGRIP1Q96KN7 1286 aa11.07□□□□□ -0.64
PDGFRB-207ENST00000520579 SOS2Q07890 1332 aaPredicted RBP11.06□□□□□ -0.64
PDGFRB-207ENST00000520579 FOXO6A8MYZ6 492 aa11.06□□□□□ -0.64
PDGFRB-207ENST00000520579 KCNA6P17658 529 aa11.06□□□□□ -0.64
PDGFRB-207ENST00000520579 EVX2Q03828 476 aa11.06□□□□□ -0.64
PDGFRB-207ENST00000520579 TRIM14Q14142 442 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms