RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 NEXMIFQ5QGS0 1516 aa9.71□□□□□ -0.86
SDCBP-208ENST00000520228 ZGLP1P0C6A0 271 aa9.7□□□□□ -0.86
SDCBP-208ENST00000520228 FAM153BP0C7A2 387 aa9.7□□□□□ -0.86
SDCBP-208ENST00000520228 ENDOUP21128 410 aaKnown RBP9.7□□□□□ -0.86
SDCBP-208ENST00000520228 HOXC12P31275 282 aa9.7□□□□□ -0.86
SDCBP-208ENST00000520228 GP2P55259 537 aaKnown RBP9.7□□□□□ -0.86
SDCBP-208ENST00000520228 LONRF2Q1L5Z9 754 aa9.7□□□□□ -0.86
SDCBP-208ENST00000520228 PI4K2BQ8TCG2 481 aa9.7□□□□□ -0.86
SDCBP-208ENST00000520228 SLAMF8Q9P0V8 285 aa9.7□□□□□ -0.86
SDCBP-208ENST00000520228 STXBP3O00186 592 aa9.69□□□□□ -0.86
SDCBP-208ENST00000520228 FGF10O15520 208 aaPredicted RBP9.69□□□□□ -0.86
SDCBP-208ENST00000520228 RNASE1P07998 156 aaKnown RBP9.69□□□□□ -0.86
SDCBP-208ENST00000520228 GSTM1P09488 218 aa9.69□□□□□ -0.86
SDCBP-208ENST00000520228 FGFR1P11362 822 aa9.69□□□□□ -0.86
SDCBP-208ENST00000520228 RPL10P27635 214 aaKnown RBP9.69□□□□□ -0.86
SDCBP-208ENST00000520228 NKTRP30414 1462 aaKnown RBP9.69□□□□□ -0.86
SDCBP-208ENST00000520228 PLCL1Q15111 1095 aa9.69□□□□□ -0.86
SDCBP-208ENST00000520228 SF1Q15637 639 aaKnown RBP9.69□□□□□ -0.86
SDCBP-208ENST00000520228 WAPLQ7Z5K2 1190 aa9.69□□□□□ -0.86
SDCBP-208ENST00000520228 TMEM52Q8NDY8 209 aa9.69□□□□□ -0.86
SDCBP-208ENST00000520228 THAP3Q8WTV1 239 aaPredicted RBP9.69□□□□□ -0.86
SDCBP-208ENST00000520228 CCDC140Q96MF4 163 aa9.69□□□□□ -0.86
SDCBP-208ENST00000520228 AARSD1Q9BTE6 412 aaKnown RBP9.69□□□□□ -0.86
SDCBP-208ENST00000520228 C19orf73Q9NVV2 129 aa9.69□□□□□ -0.86
SDCBP-208ENST00000520228 ERVK13-1Q9NX77 482 aa9.69□□□□□ -0.86
SDCBP-208ENST00000520228 TMEM59LQ9UK28 342 aa9.69□□□□□ -0.86
SDCBP-208ENST00000520228 BACE2Q9Y5Z0 518 aa9.69□□□□□ -0.86
SDCBP-208ENST00000520228 SETBP1Q9Y6X0 1596 aa9.69□□□□□ -0.86
SDCBP-208ENST00000520228 DIP2AQ14689 1571 aa9.68□□□□□ -0.86
SDCBP-208ENST00000520228 PTPRUQ92729 1446 aa9.68□□□□□ -0.86
SDCBP-208ENST00000520228 C2orf71A6NGG8 1288 aa9.68□□□□□ -0.86
SDCBP-208ENST00000520228 GFRA1P56159 465 aa9.68□□□□□ -0.86
SDCBP-208ENST00000520228 C2orf27AQ580R0 203 aa9.68□□□□□ -0.86
SDCBP-208ENST00000520228 GIMAP6Q6P9H5 292 aa9.68□□□□□ -0.86
SDCBP-208ENST00000520228 ABI1Q8IZP0 508 aa9.68□□□□□ -0.86
SDCBP-208ENST00000520228 C1orf159Q96HA4 380 aa9.68□□□□□ -0.86
SDCBP-208ENST00000520228 FCRL2Q96LA5 508 aaPredicted RBP9.68□□□□□ -0.86
SDCBP-208ENST00000520228 KANSL2Q9H9L4 492 aa9.68□□□□□ -0.86
SDCBP-208ENST00000520228 MSH6P52701 1360 aa9.67□□□□□ -0.86
SDCBP-208ENST00000520228 TRAV20A0A0B4J274 112 aa9.67□□□□□ -0.86
SDCBP-208ENST00000520228 SCRN1Q12765 414 aa9.67□□□□□ -0.86
SDCBP-208ENST00000520228 ZNF792Q3KQV3 632 aa9.67□□□□□ -0.86
SDCBP-208ENST00000520228 YOD1Q5VVQ6 348 aaPredicted RBP9.67□□□□□ -0.86
SDCBP-208ENST00000520228 FOXB2Q5VYV0 432 aa9.67□□□□□ -0.86
SDCBP-208ENST00000520228 EEF1DP3Q658K8 133 aa9.67□□□□□ -0.86
SDCBP-208ENST00000520228 JAZF1Q86VZ6 243 aa9.67□□□□□ -0.86
SDCBP-208ENST00000520228 KREMEN2Q8NCW0 462 aa9.67□□□□□ -0.86
SDCBP-208ENST00000520228 OSBP2Q969R2 916 aa9.67□□□□□ -0.86
SDCBP-208ENST00000520228 RNPC3Q96LT9 517 aaKnown RBP9.67□□□□□ -0.86
SDCBP-208ENST00000520228 CDADC1Q9BWV3 514 aa9.67□□□□□ -0.86
SDCBP-208ENST00000520228 C19orf44Q9H6X5 657 aa9.67□□□□□ -0.86
SDCBP-208ENST00000520228 C14orf93Q9H972 538 aaKnown RBP9.67□□□□□ -0.86
SDCBP-208ENST00000520228 MYO5BQ9ULV0 1848 aa9.67□□□□□ -0.86
SDCBP-208ENST00000520228 NCOA3Q9Y6Q9 1424 aa9.66□□□□□ -0.86
SDCBP-208ENST00000520228 ATF3P18847 181 aa9.66□□□□□ -0.86
SDCBP-208ENST00000520228 TMEM132EQ6IEE7 984 aa9.66□□□□□ -0.86
SDCBP-208ENST00000520228 NPLOC4Q8TAT6 608 aa9.66□□□□□ -0.86
SDCBP-208ENST00000520228 MAP6Q96JE9 813 aa9.66□□□□□ -0.86
SDCBP-208ENST00000520228 IER2Q9BTL4 223 aa9.66□□□□□ -0.86
SDCBP-208ENST00000520228 SP110Q9HB58 689 aa9.66□□□□□ -0.86
SDCBP-208ENST00000520228 STK26Q9P289 416 aa9.66□□□□□ -0.86
SDCBP-208ENST00000520228 DLX3O60479 287 aa9.65□□□□□ -0.86
SDCBP-208ENST00000520228 THBDP07204 575 aa9.65□□□□□ -0.86
SDCBP-208ENST00000520228 PABPC1P11940 636 aaKnown RBP9.65□□□□□ -0.86
SDCBP-208ENST00000520228 SLC35F1Q5T1Q4 408 aa9.65□□□□□ -0.86
SDCBP-208ENST00000520228 CBLL1Q75N03 491 aa9.65□□□□□ -0.86
SDCBP-208ENST00000520228 Q8N3U1 123 aa9.65□□□□□ -0.86
SDCBP-208ENST00000520228 TMEM145Q8NBT3 493 aa9.65□□□□□ -0.86
SDCBP-208ENST00000520228 SH3TC2Q8TF17 1288 aa9.65□□□□□ -0.86
SDCBP-208ENST00000520228 FRS2Q8WU20 508 aa9.65□□□□□ -0.86
SDCBP-208ENST00000520228 CCDC120Q96HB5 630 aa9.65□□□□□ -0.86
SDCBP-208ENST00000520228 HHIPL1Q96JK4 782 aa9.65□□□□□ -0.86
SDCBP-208ENST00000520228 EXOC2Q96KP1 924 aa9.65□□□□□ -0.86
SDCBP-208ENST00000520228 PTCHD1Q96NR3 888 aa9.65□□□□□ -0.86
SDCBP-208ENST00000520228 PCGF6Q9BYE7 350 aa9.65□□□□□ -0.86
SDCBP-208ENST00000520228 GPRC5CQ9NQ84 441 aa9.65□□□□□ -0.86
SDCBP-208ENST00000520228 OAS3Q9Y6K5 1087 aaKnown RBP9.65□□□□□ -0.86
SDCBP-208ENST00000520228 NWD1Q149M9 1564 aa9.65□□□□□ -0.86
SDCBP-208ENST00000520228 KIF1BO60333 1816 aa9.65□□□□□ -0.86
SDCBP-208ENST00000520228 PIK3C2GO75747 1445 aa9.65□□□□□ -0.87
SDCBP-208ENST00000520228 DHX57Q6P158 1386 aaKnown RBP9.64□□□□□ -0.87
SDCBP-208ENST00000520228 ALKQ9UM73 1620 aa9.64□□□□□ -0.87
SDCBP-208ENST00000520228 FADS2P1A8MWK0 482 aa9.64□□□□□ -0.87
SDCBP-208ENST00000520228 ARNTLO00327 626 aa9.64□□□□□ -0.87
SDCBP-208ENST00000520228 PRODHO43272 600 aa9.64□□□□□ -0.87
SDCBP-208ENST00000520228 CPP00450 1065 aa9.64□□□□□ -0.87
SDCBP-208ENST00000520228 SNRPB2P08579 225 aaKnown RBP9.64□□□□□ -0.87
SDCBP-208ENST00000520228 HSPA1LP34931 641 aa9.64□□□□□ -0.87
SDCBP-208ENST00000520228 GDNFP39905 211 aa9.64□□□□□ -0.87
SDCBP-208ENST00000520228 SEPHS1P49903 392 aa9.64□□□□□ -0.87
SDCBP-208ENST00000520228 MAP4K2Q12851 820 aa9.64□□□□□ -0.87
SDCBP-208ENST00000520228 DUSP4Q13115 394 aa9.64□□□□□ -0.87
SDCBP-208ENST00000520228 SQSTM1Q13501 440 aa9.64□□□□□ -0.87
SDCBP-208ENST00000520228 TESK1Q15569 626 aa9.64□□□□□ -0.87
SDCBP-208ENST00000520228 ZC3H12BQ5HYM0 836 aaKnown RBP9.64□□□□□ -0.87
SDCBP-208ENST00000520228 DENND5AQ6IQ26 1287 aa9.64□□□□□ -0.87
SDCBP-208ENST00000520228 KISS1RQ969F8 398 aaPredicted RBP9.64□□□□□ -0.87
SDCBP-208ENST00000520228 SIN3AQ96ST3 1273 aa9.64□□□□□ -0.87
SDCBP-208ENST00000520228 TNFRSF10DQ9UBN6 386 aa9.64□□□□□ -0.87
SDCBP-208ENST00000520228 CTNND2Q9UQB3 1225 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms