RNA–Protein interactions for RNA: ENST00000515546.1

HMGCLL1-209, Transcript of 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1, humanhuman

TSL 4

Gene HMGCLL1, Length 569 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCLL1-209ENST00000515546 ZBTB43O43298 467 aa17.12■□□□□ 0.33
HMGCLL1-209ENST00000515546 ITGA7Q13683 1181 aa17.12■□□□□ 0.33
HMGCLL1-209ENST00000515546 SYNE3Q6ZMZ3 975 aa17.12■□□□□ 0.33
HMGCLL1-209ENST00000515546 SEPT14Q6ZU15 432 aa17.12■□□□□ 0.33
HMGCLL1-209ENST00000515546 EMID1Q96A84 441 aaPredicted RBP17.12■□□□□ 0.33
HMGCLL1-209ENST00000515546 JAKMIP1Q96N16 626 aaKnown RBP17.12■□□□□ 0.33
HMGCLL1-209ENST00000515546 TMEM39AQ9NV64 488 aa17.12■□□□□ 0.33
HMGCLL1-209ENST00000515546 LAMA2P24043 3122 aaKnown RBP17.12■□□□□ 0.33
HMGCLL1-209ENST00000515546 SCN10AQ9Y5Y9 1956 aa17.11■□□□□ 0.33
HMGCLL1-209ENST00000515546 KLF18A0A0U1RQI7 1052 aa17.11■□□□□ 0.33
HMGCLL1-209ENST00000515546 MEIS2O14770 477 aa17.11■□□□□ 0.33
HMGCLL1-209ENST00000515546 KPNA6O60684 536 aa17.11■□□□□ 0.33
HMGCLL1-209ENST00000515546 GH1P01241 217 aa17.11■□□□□ 0.33
HMGCLL1-209ENST00000515546 CPA1P15085 419 aa17.11■□□□□ 0.33
HMGCLL1-209ENST00000515546 PSMC6P62333 389 aa17.11■□□□□ 0.33
HMGCLL1-209ENST00000515546 RTN1Q16799 776 aa17.11■□□□□ 0.33
HMGCLL1-209ENST00000515546 BRDTQ58F21 947 aaPredicted RBP17.11■□□□□ 0.33
HMGCLL1-209ENST00000515546 VTI1AQ96AJ9 217 aa17.11■□□□□ 0.33
HMGCLL1-209ENST00000515546 MTG1Q9BT17 334 aaPredicted RBP17.11■□□□□ 0.33
HMGCLL1-209ENST00000515546 AGXT2Q9BYV1 514 aa17.11■□□□□ 0.33
HMGCLL1-209ENST00000515546 FAM217BQ9NTX9 383 aaPredicted RBP17.11■□□□□ 0.33
HMGCLL1-209ENST00000515546 DDX41Q9UJV9 622 aaKnown RBP17.11■□□□□ 0.33
HMGCLL1-209ENST00000515546 TLR3O15455 904 aaKnown RBP17.1■□□□□ 0.33
HMGCLL1-209ENST00000515546 MMP3P08254 477 aa17.1■□□□□ 0.33
HMGCLL1-209ENST00000515546 RAG1P15918 1043 aa17.1■□□□□ 0.33
HMGCLL1-209ENST00000515546 RPS6KB1P23443 525 aa17.1■□□□□ 0.33
HMGCLL1-209ENST00000515546 CCND2P30279 289 aa17.1■□□□□ 0.33
HMGCLL1-209ENST00000515546 LY6KQ17RY6 165 aa17.1■□□□□ 0.33
HMGCLL1-209ENST00000515546 BLOC1S2Q6QNY1 142 aa17.1■□□□□ 0.33
HMGCLL1-209ENST00000515546 FCHSD1Q86WN1 690 aa17.1■□□□□ 0.33
HMGCLL1-209ENST00000515546 MRVI1Q9Y6F6 885 aa17.1■□□□□ 0.33
HMGCLL1-209ENST00000515546 hCG_1642624A0A1W2PR95 340 aa17.09■□□□□ 0.33
HMGCLL1-209ENST00000515546 GOLGA8AA7E2F4 631 aa17.09■□□□□ 0.33
HMGCLL1-209ENST00000515546 GOLGA8BA8MQT2 603 aa17.09■□□□□ 0.33
HMGCLL1-209ENST00000515546 TIMP1P01033 207 aa17.09■□□□□ 0.33
HMGCLL1-209ENST00000515546 MYL3P08590 195 aa17.09■□□□□ 0.33
HMGCLL1-209ENST00000515546 MYCLP12524 364 aaPredicted RBP17.09■□□□□ 0.33
HMGCLL1-209ENST00000515546 KCNV1Q6PIU1 500 aa17.09■□□□□ 0.33
HMGCLL1-209ENST00000515546 USP17L6PQ6QN14 398 aa17.09■□□□□ 0.33
HMGCLL1-209ENST00000515546 TEX2Q8IWB9 1127 aa17.09■□□□□ 0.33
HMGCLL1-209ENST00000515546 AFG1LQ8WV93 481 aa17.09■□□□□ 0.33
HMGCLL1-209ENST00000515546 INPP4AQ96PE3 977 aaPredicted RBP17.09■□□□□ 0.33
HMGCLL1-209ENST00000515546 ALDH8A1Q9H2A2 487 aaPredicted RBP17.09■□□□□ 0.33
HMGCLL1-209ENST00000515546 B4GALT4O60513 344 aa17.08■□□□□ 0.32
HMGCLL1-209ENST00000515546 STAM2O75886 525 aa17.08■□□□□ 0.32
HMGCLL1-209ENST00000515546 HOXD8P13378 290 aaPredicted RBP17.08■□□□□ 0.32
HMGCLL1-209ENST00000515546 PSMA5P28066 241 aa17.08■□□□□ 0.32
HMGCLL1-209ENST00000515546 CDC27P30260 824 aa17.08■□□□□ 0.32
HMGCLL1-209ENST00000515546 EPHB4P54760 987 aa17.08■□□□□ 0.32
HMGCLL1-209ENST00000515546 MRPS9P82933 396 aaKnown RBP17.08■□□□□ 0.32
HMGCLL1-209ENST00000515546 FPGSQ05932 587 aa17.08■□□□□ 0.32
HMGCLL1-209ENST00000515546 WWC2Q6AWC2 1192 aa17.08■□□□□ 0.32
HMGCLL1-209ENST00000515546 GPR153Q6NV75 609 aa17.08■□□□□ 0.32
HMGCLL1-209ENST00000515546 PPP1R18Q6NYC8 613 aa17.08■□□□□ 0.32
HMGCLL1-209ENST00000515546 XRRA1Q6P2D8 792 aa17.08■□□□□ 0.32
HMGCLL1-209ENST00000515546 Q6ZUG5 572 aa17.08■□□□□ 0.32
HMGCLL1-209ENST00000515546 CCDC82Q8N4S0 544 aa17.08■□□□□ 0.32
HMGCLL1-209ENST00000515546 PPTC7Q8NI37 304 aa17.08■□□□□ 0.32
HMGCLL1-209ENST00000515546 GPKOWQ92917 476 aaPredicted RBP eCLIP17.08■□□□□ 0.32
HMGCLL1-209ENST00000515546 BRF1Q92994 677 aa17.08■□□□□ 0.32
HMGCLL1-209ENST00000515546 LRCH3Q96II8 777 aa17.08■□□□□ 0.32
HMGCLL1-209ENST00000515546 USP26Q9BXU7 913 aa17.08■□□□□ 0.32
HMGCLL1-209ENST00000515546 TGFB3P10600 412 aa17.07■□□□□ 0.32
HMGCLL1-209ENST00000515546 CASTP20810 708 aaKnown RBP17.07■□□□□ 0.32
HMGCLL1-209ENST00000515546 UBA1P22314 1058 aaKnown RBP17.07■□□□□ 0.32
HMGCLL1-209ENST00000515546 ICAM3P32942 547 aa17.07■□□□□ 0.32
HMGCLL1-209ENST00000515546 EVCP57679 992 aa17.07■□□□□ 0.32
HMGCLL1-209ENST00000515546 APOBRQ0VD83 1088 aa17.07■□□□□ 0.32
HMGCLL1-209ENST00000515546 LAMC2Q13753 1193 aa17.07■□□□□ 0.32
HMGCLL1-209ENST00000515546 C9orf50Q5SZB4 431 aa17.07■□□□□ 0.32
HMGCLL1-209ENST00000515546 PCNX4Q63HM2 1172 aa17.07■□□□□ 0.32
HMGCLL1-209ENST00000515546 MFSD5Q6N075 450 aa17.07■□□□□ 0.32
HMGCLL1-209ENST00000515546 TYW1BQ6NUM6 668 aa17.07■□□□□ 0.32
HMGCLL1-209ENST00000515546 NFRKBQ6P4R8 1299 aa17.07■□□□□ 0.32
HMGCLL1-209ENST00000515546 HEATR3Q7Z4Q2 680 aa17.07■□□□□ 0.32
HMGCLL1-209ENST00000515546 SMARCC2Q8TAQ2 1214 aa17.07■□□□□ 0.32
HMGCLL1-209ENST00000515546 CUL5Q93034 780 aa17.07■□□□□ 0.32
HMGCLL1-209ENST00000515546 TRPV6Q9H1D0 765 aa17.07■□□□□ 0.32
HMGCLL1-209ENST00000515546 PSTPIP2Q9H939 334 aa17.07■□□□□ 0.32
HMGCLL1-209ENST00000515546 hCG_1984214I3L0E3 225 aa17.06■□□□□ 0.32
HMGCLL1-209ENST00000515546 METAP2P50579 478 aaKnown RBP eCLIP17.06■□□□□ 0.32
HMGCLL1-209ENST00000515546 FGD1P98174 961 aa17.06■□□□□ 0.32
HMGCLL1-209ENST00000515546 SP2Q02086 613 aa17.06■□□□□ 0.32
HMGCLL1-209ENST00000515546 PTPN11Q06124 597 aaPredicted RBP17.06■□□□□ 0.32
HMGCLL1-209ENST00000515546 SHHQ15465 462 aa17.06■□□□□ 0.32
HMGCLL1-209ENST00000515546 NBPF20Q3BBV1 942 aa17.06■□□□□ 0.32
HMGCLL1-209ENST00000515546 MYSM1Q5VVJ2 828 aa17.06■□□□□ 0.32
HMGCLL1-209ENST00000515546 ZNF713Q8N859 430 aaPredicted RBP17.06■□□□□ 0.32
HMGCLL1-209ENST00000515546 KAT2BQ92831 832 aa17.06■□□□□ 0.32
HMGCLL1-209ENST00000515546 NOC4LQ9BVI4 516 aaKnown RBP17.06■□□□□ 0.32
HMGCLL1-209ENST00000515546 TM6SF1Q9BZW5 370 aa17.06■□□□□ 0.32
HMGCLL1-209ENST00000515546 ZSWIM6Q9HCJ5 1215 aa17.06■□□□□ 0.32
HMGCLL1-209ENST00000515546 CCDC196A0A1B0GTZ2 297 aa17.05■□□□□ 0.32
HMGCLL1-209ENST00000515546 F2P00734 622 aa17.05■□□□□ 0.32
HMGCLL1-209ENST00000515546 SEMA3FQ13275 785 aa17.05■□□□□ 0.32
HMGCLL1-209ENST00000515546 DGKDQ16760 1214 aa17.05■□□□□ 0.32
HMGCLL1-209ENST00000515546 UBE2SQ16763 222 aa17.05■□□□□ 0.32
HMGCLL1-209ENST00000515546 GNPTABQ3T906 1256 aa17.05■□□□□ 0.32
HMGCLL1-209ENST00000515546 CELF3Q5SZQ8 465 aaKnown RBP17.05■□□□□ 0.32
HMGCLL1-209ENST00000515546 SESTD1Q86VW0 696 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms