RNA–Protein interactions for RNA: ENST00000514402.1

MATR3-223, Transcript of matrin 3, human

TSL 2

Gene MATR3, Length 556 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MATR3-223	ENST00000514402	COA3	Q9Y2R0	106 aa	Predicted RBP	6.56	□□□□□ -1.36
MATR3-223	ENST00000514402	TRAV20	A0A0B4J274	112 aa		6.55	□□□□□ -1.36
MATR3-223	ENST00000514402	ARNTL	O00327	626 aa		6.55	□□□□□ -1.36
MATR3-223	ENST00000514402	NCKAP1L	P55160	1127 aa		6.55	□□□□□ -1.36
MATR3-223	ENST00000514402	CEP68	Q76N32	757 aa		6.55	□□□□□ -1.36
MATR3-223	ENST00000514402	TRMT2B	Q96GJ1	504 aa	Known RBP	6.55	□□□□□ -1.36
MATR3-223	ENST00000514402	ZFYVE21	Q9BQ24	234 aa		6.55	□□□□□ -1.36
MATR3-223	ENST00000514402	KRTAP4-9	Q9BYQ8	210 aa		6.55	□□□□□ -1.36
MATR3-223	ENST00000514402	ARHGEF4	Q9NR80	690 aa		6.55	□□□□□ -1.36
MATR3-223	ENST00000514402	PPP1R1B	Q9UD71	204 aa	Predicted RBP	6.55	□□□□□ -1.36
MATR3-223	ENST00000514402	DLX3	O60479	287 aa		6.54	□□□□□ -1.36
MATR3-223	ENST00000514402	ATF2	P15336	505 aa		6.54	□□□□□ -1.36
MATR3-223	ENST00000514402	PML	P29590	882 aa		6.54	□□□□□ -1.36
MATR3-223	ENST00000514402	BCL6	P41182	706 aa		6.54	□□□□□ -1.36
MATR3-223	ENST00000514402	GRIA2	P42262	883 aa		6.54	□□□□□ -1.36
MATR3-223	ENST00000514402	HTRA3	P83110	453 aa		6.54	□□□□□ -1.36
MATR3-223	ENST00000514402	FOXO4	P98177	505 aa		6.54	□□□□□ -1.36
MATR3-223	ENST00000514402	CACNB2	Q08289	660 aa	Predicted RBP	6.54	□□□□□ -1.36
MATR3-223	ENST00000514402	DENND5A	Q6IQ26	1287 aa		6.54	□□□□□ -1.36
MATR3-223	ENST00000514402	NLRP10	Q86W26	655 aa		6.54	□□□□□ -1.36
MATR3-223	ENST00000514402	MIB1	Q86YT6	1006 aa		6.54	□□□□□ -1.36
MATR3-223	ENST00000514402	LINC01356	Q8N9X3	169 aa		6.54	□□□□□ -1.36
MATR3-223	ENST00000514402	PANK1	Q8TE04	598 aa		6.54	□□□□□ -1.36
MATR3-223	ENST00000514402	DCAF4	Q8WV16	495 aa		6.54	□□□□□ -1.36
MATR3-223	ENST00000514402	PWWP2A	Q96N64	755 aa		6.54	□□□□□ -1.36
MATR3-223	ENST00000514402	NGRN	Q9NPE2	291 aa	Known RBP	6.54	□□□□□ -1.36
MATR3-223	ENST00000514402	BTG4	Q9NY30	223 aa		6.54	□□□□□ -1.36
MATR3-223	ENST00000514402	ZNF652	Q9Y2D9	606 aa		6.54	□□□□□ -1.36
MATR3-223	ENST00000514402	PABPC1	P11940	636 aa	Known RBP	6.53	□□□□□ -1.36
MATR3-223	ENST00000514402	FPR2	P25090	351 aa		6.53	□□□□□ -1.36
MATR3-223	ENST00000514402	GTF2F1	P35269	517 aa	Known RBP eCLIP	6.53	□□□□□ -1.36
MATR3-223	ENST00000514402	LONRF2	Q1L5Z9	754 aa		6.53	□□□□□ -1.36
MATR3-223	ENST00000514402	EMC4	Q5J8M3	183 aa		6.53	□□□□□ -1.36
MATR3-223	ENST00000514402	SP8	Q8IXZ3	490 aa		6.53	□□□□□ -1.36
MATR3-223	ENST00000514402	SPATA9	Q9BWV2	254 aa		6.53	□□□□□ -1.36
MATR3-223	ENST00000514402	EPB41L1	Q9H4G0	881 aa		6.53	□□□□□ -1.36
MATR3-223	ENST00000514402	RXFP1	Q9HBX9	757 aa		6.53	□□□□□ -1.36
MATR3-223	ENST00000514402	PCDHA2	Q9Y5H9	948 aa		6.53	□□□□□ -1.36
MATR3-223	ENST00000514402	SGSM2	O43147	1006 aa		6.52	□□□□□ -1.37
MATR3-223	ENST00000514402	SERINC3	Q13530	473 aa		6.52	□□□□□ -1.37
MATR3-223	ENST00000514402	MTERF2	Q49AM1	385 aa		6.52	□□□□□ -1.37
MATR3-223	ENST00000514402	CYP4F22	Q6NT55	531 aa		6.52	□□□□□ -1.37
MATR3-223	ENST00000514402	NSMF	Q6X4W1	530 aa		6.52	□□□□□ -1.37
MATR3-223	ENST00000514402	ETV3L	Q6ZN32	361 aa		6.52	□□□□□ -1.37
MATR3-223	ENST00000514402	MARCH10	Q8NA82	808 aa	Predicted RBP	6.52	□□□□□ -1.37
MATR3-223	ENST00000514402	MKL1	Q969V6	931 aa		6.52	□□□□□ -1.37
MATR3-223	ENST00000514402	PLA2G2D	Q9UNK4	145 aa		6.52	□□□□□ -1.37
MATR3-223	ENST00000514402	PMF1-BGLAP	U3KQ54	211 aa		6.52	□□□□□ -1.37
MATR3-223	ENST00000514402	SH3D21	A4FU49	640 aa		6.51	□□□□□ -1.37
MATR3-223	ENST00000514402	HGS	O14964	777 aa	Predicted RBP	6.51	□□□□□ -1.37
MATR3-223	ENST00000514402	PRODH	O43272	600 aa		6.51	□□□□□ -1.37
MATR3-223	ENST00000514402	MAFK	O60675	156 aa		6.51	□□□□□ -1.37
MATR3-223	ENST00000514402	LCP1	P13796	627 aa		6.51	□□□□□ -1.37
MATR3-223	ENST00000514402	LIMS1	P48059	325 aa		6.51	□□□□□ -1.37
MATR3-223	ENST00000514402	IFRD2	Q12894	506 aa	Predicted RBP	6.51	□□□□□ -1.37
MATR3-223	ENST00000514402	ZC3H12B	Q5HYM0	836 aa	Known RBP	6.51	□□□□□ -1.37
MATR3-223	ENST00000514402	STYK1	Q6J9G0	422 aa		6.51	□□□□□ -1.37
MATR3-223	ENST00000514402	TTLL10	Q6ZVT0	673 aa		6.51	□□□□□ -1.37
MATR3-223	ENST00000514402	ZC3H18	Q86VM9	953 aa	Known RBP	6.51	□□□□□ -1.37
MATR3-223	ENST00000514402	PHOSPHO1	Q8TCT1	267 aa		6.51	□□□□□ -1.37
MATR3-223	ENST00000514402	FNIP1	Q8TF40	1166 aa		6.51	□□□□□ -1.37
MATR3-223	ENST00000514402	OSBP2	Q969R2	916 aa		6.51	□□□□□ -1.37
MATR3-223	ENST00000514402	CHAMP1	Q96JM3	812 aa		6.51	□□□□□ -1.37
MATR3-223	ENST00000514402	KCNC2	Q96PR1	638 aa		6.51	□□□□□ -1.37
MATR3-223	ENST00000514402	LUC7L	Q9NQ29	371 aa	Known RBP	6.51	□□□□□ -1.37
MATR3-223	ENST00000514402	CLDND1	Q9NY35	253 aa		6.51	□□□□□ -1.37
MATR3-223	ENST00000514402	SIT1	Q9Y3P8	196 aa		6.51	□□□□□ -1.37
MATR3-223	ENST00000514402	DGKI	O75912	1065 aa		6.5	□□□□□ -1.37
MATR3-223	ENST00000514402	SASH1	O94885	1247 aa		6.5	□□□□□ -1.37
MATR3-223	ENST00000514402	CYP2C8	P10632	490 aa		6.5	□□□□□ -1.37
MATR3-223	ENST00000514402	MC3R	P41968	323 aa		6.5	□□□□□ -1.37
MATR3-223	ENST00000514402	KIZ	Q2M2Z5	673 aa		6.5	□□□□□ -1.37
MATR3-223	ENST00000514402	USP53	Q70EK8	1073 aa		6.5	□□□□□ -1.37
MATR3-223	ENST00000514402	MILR1	Q7Z6M3	343 aa		6.5	□□□□□ -1.37
MATR3-223	ENST00000514402	SAPCD2	Q86UD0	394 aa		6.5	□□□□□ -1.37
MATR3-223	ENST00000514402	FAM126B	Q8IXS8	530 aa		6.5	□□□□□ -1.37
MATR3-223	ENST00000514402	SMARCC2	Q8TAQ2	1214 aa		6.5	□□□□□ -1.37
MATR3-223	ENST00000514402	PUM2	Q8TB72	1066 aa	Known RBP eCLIP	6.5	□□□□□ -1.37
MATR3-223	ENST00000514402	PHF20	Q9BVI0	1012 aa		6.5	□□□□□ -1.37
MATR3-223	ENST00000514402	PARD6A	Q9NPB6	346 aa		6.5	□□□□□ -1.37
MATR3-223	ENST00000514402	FBXL7	Q9UJT9	491 aa		6.5	□□□□□ -1.37
MATR3-223	ENST00000514402	PALD1	Q9ULE6	856 aa		6.5	□□□□□ -1.37
MATR3-223	ENST00000514402	KRIT1	O00522	736 aa		6.49	□□□□□ -1.37
MATR3-223	ENST00000514402	TRIM13	O60858	407 aa		6.49	□□□□□ -1.37
MATR3-223	ENST00000514402	TADA3	O75528	432 aa		6.49	□□□□□ -1.37
MATR3-223	ENST00000514402	PLA2G1B	P04054	148 aa	Known RBP	6.49	□□□□□ -1.37
MATR3-223	ENST00000514402	SSRP1	Q08945	709 aa	Known RBP	6.49	□□□□□ -1.37
MATR3-223	ENST00000514402	RASA3	Q14644	834 aa		6.49	□□□□□ -1.37
MATR3-223	ENST00000514402	VWA3B	Q502W6	1294 aa		6.49	□□□□□ -1.37
MATR3-223	ENST00000514402	STEAP3	Q658P3	488 aa		6.49	□□□□□ -1.37
MATR3-223	ENST00000514402	LBX2	Q6XYB7	198 aa		6.49	□□□□□ -1.37
MATR3-223	ENST00000514402	SPATC1	Q76KD6	591 aa		6.49	□□□□□ -1.37
MATR3-223	ENST00000514402	SCUBE1	Q8IWY4	988 aa		6.49	□□□□□ -1.37
MATR3-223	ENST00000514402	IFNL3	Q8IZI9	196 aa		6.49	□□□□□ -1.37
MATR3-223	ENST00000514402	LINC00482	Q8N8I6	264 aa		6.49	□□□□□ -1.37
MATR3-223	ENST00000514402	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	6.49	□□□□□ -1.37
MATR3-223	ENST00000514402	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	6.49	□□□□□ -1.37
MATR3-223	ENST00000514402	CDIP1	Q9H305	208 aa		6.49	□□□□□ -1.37
MATR3-223	ENST00000514402	FFAR3	O14843	346 aa		6.48	□□□□□ -1.37
MATR3-223	ENST00000514402	ADCY3	O60266	1144 aa		6.48	□□□□□ -1.37

Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms