RNA–Protein interactions for RNA: ENST00000509601.1

TPM3-220, Transcript of tropomyosin 3, humanhuman

TSL 4

Gene TPM3, Length 543 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-220ENST00000509601 CCDC69A6NI79 296 aa20.76■□□□□ 0.91
TPM3-220ENST00000509601 CDC45O75419 566 aa20.76■□□□□ 0.91
TPM3-220ENST00000509601 PLEKHA8P1O95397 391 aa20.76■□□□□ 0.91
TPM3-220ENST00000509601 ACRP10323 421 aa20.76■□□□□ 0.91
TPM3-220ENST00000509601 MYCLP12524 364 aaPredicted RBP20.76■□□□□ 0.91
TPM3-220ENST00000509601 RXRAP19793 462 aa20.76■□□□□ 0.91
TPM3-220ENST00000509601 KIF5BP33176 963 aa20.76■□□□□ 0.91
TPM3-220ENST00000509601 NFXL1Q6ZNB6 911 aa20.76■□□□□ 0.91
TPM3-220ENST00000509601 FCHSD1Q86WN1 690 aa20.76■□□□□ 0.91
TPM3-220ENST00000509601 CMTR1Q8N1G2 835 aaKnown RBP20.76■□□□□ 0.91
TPM3-220ENST00000509601 NEK1Q96PY6 1258 aa20.76■□□□□ 0.91
TPM3-220ENST00000509601 LZTS2Q9BRK4 669 aa20.76■□□□□ 0.91
TPM3-220ENST00000509601 MMP3P08254 477 aa20.75■□□□□ 0.91
TPM3-220ENST00000509601 RASIP1Q5U651 963 aa20.75■□□□□ 0.91
TPM3-220ENST00000509601 ZNF365Q70YC5 407 aa20.75■□□□□ 0.91
TPM3-220ENST00000509601 SGMS1Q86VZ5 419 aa20.75■□□□□ 0.91
TPM3-220ENST00000509601 KAT2BQ92831 832 aa20.75■□□□□ 0.91
TPM3-220ENST00000509601 VWCEQ96DN2 955 aa20.75■□□□□ 0.91
TPM3-220ENST00000509601 CCDC136Q96JN2 1154 aa20.75■□□□□ 0.91
TPM3-220ENST00000509601 ZFP91Q96JP5 570 aaPredicted RBP20.75■□□□□ 0.91
TPM3-220ENST00000509601 GUCD1Q96NT3 240 aa20.75■□□□□ 0.91
TPM3-220ENST00000509601 WNT8AQ9H1J5 351 aa20.75■□□□□ 0.91
TPM3-220ENST00000509601 SEMA6BQ9H3T3 888 aa20.75■□□□□ 0.91
TPM3-220ENST00000509601 CYP2C9P11712 490 aa20.74■□□□□ 0.91
TPM3-220ENST00000509601 GNAQP50148 359 aa20.74■□□□□ 0.91
TPM3-220ENST00000509601 CCL23P55773 120 aa20.74■□□□□ 0.91
TPM3-220ENST00000509601 SP2Q02086 613 aa20.74■□□□□ 0.91
TPM3-220ENST00000509601 ADCK5Q3MIX3 580 aa20.74■□□□□ 0.91
TPM3-220ENST00000509601 RNF20Q5VTR2 975 aa20.74■□□□□ 0.91
TPM3-220ENST00000509601 NFRKBQ6P4R8 1299 aa20.74■□□□□ 0.91
TPM3-220ENST00000509601 RAB11FIP4Q86YS3 637 aa20.74■□□□□ 0.91
TPM3-220ENST00000509601 FANCBQ8NB91 859 aa20.74■□□□□ 0.91
TPM3-220ENST00000509601 EMID1Q96A84 441 aaPredicted RBP20.74■□□□□ 0.91
TPM3-220ENST00000509601 RRP36Q96EU6 259 aaKnown RBP20.74■□□□□ 0.91
TPM3-220ENST00000509601 IL23AQ9NPF7 189 aa20.74■□□□□ 0.91
TPM3-220ENST00000509601 SLC12A7Q9Y666 1083 aa20.74■□□□□ 0.91
TPM3-220ENST00000509601 MRVI1Q9Y6F6 885 aa20.74■□□□□ 0.91
TPM3-220ENST00000509601 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.73■□□□□ 0.91
TPM3-220ENST00000509601 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.73■□□□□ 0.91
TPM3-220ENST00000509601 SUPT20HL2P0C7V6 817 aa20.73■□□□□ 0.91
TPM3-220ENST00000509601 CALM1P0DP23 149 aa20.73■□□□□ 0.91
TPM3-220ENST00000509601 CALM2P0DP24 149 aa20.73■□□□□ 0.91
TPM3-220ENST00000509601 CALM3P0DP25 149 aa20.73■□□□□ 0.91
TPM3-220ENST00000509601 PTPN11Q06124 597 aaPredicted RBP20.73■□□□□ 0.91
TPM3-220ENST00000509601 LAMC2Q13753 1193 aa20.73■□□□□ 0.91
TPM3-220ENST00000509601 GPKOWQ92917 476 aaPredicted RBP eCLIP20.73■□□□□ 0.911e-12■□□□□ 9.1
TPM3-220ENST00000509601 FAM161BQ96MY7 647 aa20.73■□□□□ 0.91
TPM3-220ENST00000509601 TTYH1Q9H313 450 aaPredicted RBP20.73■□□□□ 0.91
TPM3-220ENST00000509601 STXBP5LQ9Y2K9 1186 aa20.73■□□□□ 0.91
TPM3-220ENST00000509601 CDH23Q9H251 3354 aa20.72■□□□□ 0.91
TPM3-220ENST00000509601 MEIS2O14770 477 aa20.72■□□□□ 0.91
TPM3-220ENST00000509601 CASTP20810 708 aaKnown RBP20.72■□□□□ 0.91
TPM3-220ENST00000509601 MRPS9P82933 396 aaKnown RBP20.72■□□□□ 0.91
TPM3-220ENST00000509601 FAM47CQ5HY64 1035 aa20.72■□□□□ 0.91
TPM3-220ENST00000509601 MYSM1Q5VVJ2 828 aa20.72■□□□□ 0.91
TPM3-220ENST00000509601 USP17L6PQ6QN14 398 aa20.72■□□□□ 0.91
TPM3-220ENST00000509601 DHX32Q7L7V1 743 aaKnown RBP20.72■□□□□ 0.91
TPM3-220ENST00000509601 DHX37Q8IY37 1157 aaKnown RBP20.72■□□□□ 0.91
TPM3-220ENST00000509601 KCNB2Q92953 911 aa20.72■□□□□ 0.91
TPM3-220ENST00000509601 BCAS3Q9H6U6 928 aa20.72■□□□□ 0.91
TPM3-220ENST00000509601 MYH7BA7E2Y1 1941 aa20.71■□□□□ 0.91
TPM3-220ENST00000509601 TGFB3P10600 412 aa20.71■□□□□ 0.91
TPM3-220ENST00000509601 CCND2P30279 289 aa20.71■□□□□ 0.91
TPM3-220ENST00000509601 CELF3Q5SZQ8 465 aaKnown RBP20.71■□□□□ 0.91
TPM3-220ENST00000509601 ZNF697Q5TEC3 545 aa20.71■□□□□ 0.91
TPM3-220ENST00000509601 KCNV1Q6PIU1 500 aa20.71■□□□□ 0.91
TPM3-220ENST00000509601 HERVK_113Q902F9 699 aa20.71■□□□□ 0.91
TPM3-220ENST00000509601 SCLYQ96I15 445 aa20.71■□□□□ 0.91
TPM3-220ENST00000509601 TCEANC2Q96MN5 208 aa20.71■□□□□ 0.91
TPM3-220ENST00000509601 CTAGE1Q96RT6 745 aa20.71■□□□□ 0.91
TPM3-220ENST00000509601 BRPF3Q9ULD4 1205 aa20.71■□□□□ 0.91
TPM3-220ENST00000509601 FRMPD4Q14CM0 1322 aa20.71■□□□□ 0.91
TPM3-220ENST00000509601 hCG_1642624A0A1W2PR95 340 aa20.7■□□□□ 0.9
TPM3-220ENST00000509601 PIK3CDO00329 1044 aa20.7■□□□□ 0.9
TPM3-220ENST00000509601 FGBP02675 491 aa20.7■□□□□ 0.9
TPM3-220ENST00000509601 HOXD8P13378 290 aaPredicted RBP20.7■□□□□ 0.9
TPM3-220ENST00000509601 DGKDQ16760 1214 aa20.7■□□□□ 0.9
TPM3-220ENST00000509601 PSRC1Q6PGN9 363 aaPredicted RBP20.7■□□□□ 0.9
TPM3-220ENST00000509601 TMTC3Q6ZXV5 915 aa20.7■□□□□ 0.9
TPM3-220ENST00000509601 CCDC82Q8N4S0 544 aa20.7■□□□□ 0.9
TPM3-220ENST00000509601 PPTC7Q8NI37 304 aa20.7■□□□□ 0.9
TPM3-220ENST00000509601 CXXC1Q9P0U4 656 aaPredicted RBP20.7■□□□□ 0.9
TPM3-220ENST00000509601 GRXCR1A8MXD5 290 aa20.69■□□□□ 0.9
TPM3-220ENST00000509601 PPFIA4O75335 1185 aa20.69■□□□□ 0.9
TPM3-220ENST00000509601 ICAM3P32942 547 aa20.69■□□□□ 0.9
TPM3-220ENST00000509601 HSDL1Q3SXM5 330 aa20.69■□□□□ 0.9
TPM3-220ENST00000509601 SESTD1Q86VW0 696 aa20.69■□□□□ 0.9
TPM3-220ENST00000509601 RPUSD2Q8IZ73 545 aaKnown RBP20.69■□□□□ 0.9
TPM3-220ENST00000509601 CDX2Q99626 313 aaPredicted RBP20.69■□□□□ 0.9
TPM3-220ENST00000509601 SEC63Q9UGP8 760 aaKnown RBP20.69■□□□□ 0.9
TPM3-220ENST00000509601 HAS3O00219 553 aa20.68■□□□□ 0.9
TPM3-220ENST00000509601 SORBS3O60504 671 aa20.68■□□□□ 0.9
TPM3-220ENST00000509601 GGPS1O95749 300 aa20.68■□□□□ 0.9
TPM3-220ENST00000509601 UBA1P22314 1058 aaKnown RBP20.68■□□□□ 0.9
TPM3-220ENST00000509601 CHMP4BP1P59074 171 aa20.68■□□□□ 0.9
TPM3-220ENST00000509601 SEMA3FQ13275 785 aa20.68■□□□□ 0.9
TPM3-220ENST00000509601 GDF6Q6KF10 455 aaPredicted RBP20.68■□□□□ 0.9
TPM3-220ENST00000509601 APOA5Q6Q788 366 aa20.68■□□□□ 0.9
TPM3-220ENST00000509601 MICU3Q86XE3 530 aa20.68■□□□□ 0.9
TPM3-220ENST00000509601 INPP4AQ96PE3 977 aaPredicted RBP20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms