RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 MYCLP12524 364 aaPredicted RBP20.8■□□□□ 0.92
SQSTM1-209ENST00000504627 HOXA13P31271 388 aaPredicted RBP20.8■□□□□ 0.92
SQSTM1-209ENST00000504627 MCM5P33992 734 aa20.8■□□□□ 0.92
SQSTM1-209ENST00000504627 NBPF20Q3BBV1 942 aa20.8■□□□□ 0.92
SQSTM1-209ENST00000504627 TMEM240Q5SV17 173 aa20.8■□□□□ 0.92
SQSTM1-209ENST00000504627 CCDC62Q6P9F0 684 aa20.8■□□□□ 0.92
SQSTM1-209ENST00000504627 PIBF1Q8WXW3 757 aa20.8■□□□□ 0.92
SQSTM1-209ENST00000504627 NOC4LQ9BVI4 516 aaKnown RBP20.8■□□□□ 0.92
SQSTM1-209ENST00000504627 TM6SF1Q9BZW5 370 aa20.8■□□□□ 0.92
SQSTM1-209ENST00000504627 TRMT13Q9NUP7 481 aaKnown RBP20.8■□□□□ 0.92
SQSTM1-209ENST00000504627 MRVI1Q9Y6F6 885 aa20.8■□□□□ 0.92
SQSTM1-209ENST00000504627 COL6A3P12111 3177 aa20.8■□□□□ 0.92
SQSTM1-209ENST00000504627 UMODL1Q5DID0 1318 aa20.79■□□□□ 0.92
SQSTM1-209ENST00000504627 CCDC69A6NI79 296 aa20.79■□□□□ 0.92
SQSTM1-209ENST00000504627 GCOM1H8Y6P7 765 aaPredicted RBP20.79■□□□□ 0.92
SQSTM1-209ENST00000504627 CYTH3O43739 400 aa20.79■□□□□ 0.92
SQSTM1-209ENST00000504627 POLR2MP0CAP2 368 aa20.79■□□□□ 0.92
SQSTM1-209ENST00000504627 KIF5BP33176 963 aa20.79■□□□□ 0.92
SQSTM1-209ENST00000504627 SLC35G1Q2M3R5 365 aa20.79■□□□□ 0.92
SQSTM1-209ENST00000504627 ZNF365Q70YC5 407 aa20.79■□□□□ 0.92
SQSTM1-209ENST00000504627 C16orf59Q7L2K0 433 aa20.79■□□□□ 0.92
SQSTM1-209ENST00000504627 ZNF654Q8IZM8 581 aa20.79■□□□□ 0.92
SQSTM1-209ENST00000504627 AFG1LQ8WV93 481 aa20.79■□□□□ 0.92
SQSTM1-209ENST00000504627 GUCD1Q96NT3 240 aa20.79■□□□□ 0.92
SQSTM1-209ENST00000504627 MTA3Q9BTC8 594 aa20.79■□□□□ 0.92
SQSTM1-209ENST00000504627 SEMA6BQ9H3T3 888 aa20.79■□□□□ 0.92
SQSTM1-209ENST00000504627 LY9Q9HBG7 655 aa20.79■□□□□ 0.92
SQSTM1-209ENST00000504627 IL23AQ9NPF7 189 aa20.79■□□□□ 0.92
SQSTM1-209ENST00000504627 DDAH1O94760 285 aa20.78■□□□□ 0.92
SQSTM1-209ENST00000504627 PSMA5P28066 241 aa20.78■□□□□ 0.92
SQSTM1-209ENST00000504627 GHRHRQ02643 423 aa20.78■□□□□ 0.92
SQSTM1-209ENST00000504627 FCHSD1Q86WN1 690 aa20.78■□□□□ 0.92
SQSTM1-209ENST00000504627 TMTC2Q8N394 836 aa20.78■□□□□ 0.92
SQSTM1-209ENST00000504627 MAP3K14Q99558 947 aa20.78■□□□□ 0.92
SQSTM1-209ENST00000504627 PDCD2LQ9BRP1 358 aa20.78■□□□□ 0.92
SQSTM1-209ENST00000504627 MYL10Q9BUA6 226 aa20.78■□□□□ 0.92
SQSTM1-209ENST00000504627 MTIF3Q9H2K0 278 aaKnown RBP20.78■□□□□ 0.92
SQSTM1-209ENST00000504627 FGBP02675 491 aa20.77■□□□□ 0.92
SQSTM1-209ENST00000504627 MMP3P08254 477 aa20.77■□□□□ 0.92
SQSTM1-209ENST00000504627 CYP2C9P11712 490 aa20.77■□□□□ 0.92
SQSTM1-209ENST00000504627 NFRKBQ6P4R8 1299 aa20.77■□□□□ 0.92
SQSTM1-209ENST00000504627 PPP1R13LQ8WUF5 828 aa20.77■□□□□ 0.92
SQSTM1-209ENST00000504627 TMEM87BQ96K49 555 aa20.77■□□□□ 0.92
SQSTM1-209ENST00000504627 DDX41Q9UJV9 622 aaKnown RBP20.77■□□□□ 0.92
SQSTM1-209ENST00000504627 NOD1Q9Y239 953 aa20.77■□□□□ 0.92
SQSTM1-209ENST00000504627 BAZ2BQ9UIF8 2168 aaKnown RBP20.77■□□□□ 0.92
SQSTM1-209ENST00000504627 SH2B2O14492 632 aaPredicted RBP20.76■□□□□ 0.91
SQSTM1-209ENST00000504627 CASTP20810 708 aaKnown RBP20.76■□□□□ 0.91
SQSTM1-209ENST00000504627 PTPN11Q06124 597 aaPredicted RBP20.76■□□□□ 0.91
SQSTM1-209ENST00000504627 ARHGAP1Q07960 439 aa20.76■□□□□ 0.91
SQSTM1-209ENST00000504627 PGM5Q15124 567 aa20.76■□□□□ 0.91
SQSTM1-209ENST00000504627 DHX37Q8IY37 1157 aaKnown RBP20.76■□□□□ 0.91
SQSTM1-209ENST00000504627 RPUSD2Q8IZ73 545 aaKnown RBP20.76■□□□□ 0.91
SQSTM1-209ENST00000504627 RRP36Q96EU6 259 aaKnown RBP20.76■□□□□ 0.91
SQSTM1-209ENST00000504627 SCLYQ96I15 445 aa20.76■□□□□ 0.91
SQSTM1-209ENST00000504627 JAKMIP1Q96N16 626 aaKnown RBP20.76■□□□□ 0.91
SQSTM1-209ENST00000504627 CDX2Q99626 313 aaPredicted RBP20.76■□□□□ 0.91
SQSTM1-209ENST00000504627 SEC63Q9UGP8 760 aaKnown RBP20.76■□□□□ 0.91
SQSTM1-209ENST00000504627 TMEM265A0A087WTH1 108 aa20.75■□□□□ 0.91
SQSTM1-209ENST00000504627 ST18O60284 1047 aa20.75■□□□□ 0.91
SQSTM1-209ENST00000504627 DNAJB2P25686 324 aa20.75■□□□□ 0.91
SQSTM1-209ENST00000504627 CCND2P30279 289 aa20.75■□□□□ 0.91
SQSTM1-209ENST00000504627 GNAQP50148 359 aa20.75■□□□□ 0.91
SQSTM1-209ENST00000504627 LAMC2Q13753 1193 aa20.75■□□□□ 0.91
SQSTM1-209ENST00000504627 DGKDQ16760 1214 aa20.75■□□□□ 0.91
SQSTM1-209ENST00000504627 KCNV1Q6PIU1 500 aa20.75■□□□□ 0.91
SQSTM1-209ENST00000504627 SNX21Q969T3 373 aa20.75■□□□□ 0.91
SQSTM1-209ENST00000504627 LZTS2Q9BRK4 669 aa20.75■□□□□ 0.91
SQSTM1-209ENST00000504627 WNT8AQ9H1J5 351 aa20.75■□□□□ 0.91
SQSTM1-209ENST00000504627 TTYH1Q9H313 450 aaPredicted RBP20.75■□□□□ 0.91
SQSTM1-209ENST00000504627 CALM1P0DP23 149 aa20.74■□□□□ 0.91
SQSTM1-209ENST00000504627 CALM2P0DP24 149 aa20.74■□□□□ 0.91
SQSTM1-209ENST00000504627 CALM3P0DP25 149 aa20.74■□□□□ 0.91
SQSTM1-209ENST00000504627 BECN1Q14457 450 aa20.74■□□□□ 0.91
SQSTM1-209ENST00000504627 ADCK5Q3MIX3 580 aa20.74■□□□□ 0.91
SQSTM1-209ENST00000504627 OTOP2Q7RTS6 562 aa20.74■□□□□ 0.91
SQSTM1-209ENST00000504627 VSIG10LQ86VR7 867 aa20.74■□□□□ 0.91
SQSTM1-209ENST00000504627 RETREG2Q8NC44 543 aa20.74■□□□□ 0.91
SQSTM1-209ENST00000504627 HERVK_113Q902F9 699 aa20.74■□□□□ 0.91
SQSTM1-209ENST00000504627 SPZ1Q9BXG8 430 aa20.74■□□□□ 0.91
SQSTM1-209ENST00000504627 ZSWIM6Q9HCJ5 1215 aa20.74■□□□□ 0.91
SQSTM1-209ENST00000504627 SLC12A7Q9Y666 1083 aa20.74■□□□□ 0.91
SQSTM1-209ENST00000504627 HMGB1P09429 215 aaKnown RBP20.73■□□□□ 0.91
SQSTM1-209ENST00000504627 SMARCA1P28370 1054 aa20.73■□□□□ 0.91
SQSTM1-209ENST00000504627 LIFRP42702 1097 aa20.73■□□□□ 0.91
SQSTM1-209ENST00000504627 RASIP1Q5U651 963 aa20.73■□□□□ 0.91
SQSTM1-209ENST00000504627 CUL5Q93034 780 aa20.73■□□□□ 0.91
SQSTM1-209ENST00000504627 EMID1Q96A84 441 aaPredicted RBP20.73■□□□□ 0.91
SQSTM1-209ENST00000504627 TIFAQ96CG3 184 aa20.73■□□□□ 0.91
SQSTM1-209ENST00000504627 ZFP91Q96JP5 570 aaPredicted RBP20.73■□□□□ 0.91
SQSTM1-209ENST00000504627 LRRC2Q9BYS8 371 aa20.73■□□□□ 0.91
SQSTM1-209ENST00000504627 SCN10AQ9Y5Y9 1956 aa20.73■□□□□ 0.91
SQSTM1-209ENST00000504627 GRXCR1A8MXD5 290 aa20.72■□□□□ 0.91
SQSTM1-209ENST00000504627 SORBS3O60504 671 aa20.72■□□□□ 0.91
SQSTM1-209ENST00000504627 RGS20O76081 388 aa20.72■□□□□ 0.91
SQSTM1-209ENST00000504627 RXRAP19793 462 aa20.72■□□□□ 0.91
SQSTM1-209ENST00000504627 BLOC1S2Q6QNY1 142 aa20.72■□□□□ 0.91
SQSTM1-209ENST00000504627 DEFB128Q7Z7B8 93 aa20.72■□□□□ 0.91
SQSTM1-209ENST00000504627 HSCBQ8IWL3 235 aa20.72■□□□□ 0.91
SQSTM1-209ENST00000504627 IL31RAQ8NI17 732 aa20.72■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms