RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 DNAJB2P25686 324 aa11.51□□□□□ -0.57
NUP54-203ENST00000504173 ADCY7P51828 1080 aa11.51□□□□□ -0.57
NUP54-203ENST00000504173 FOSBP53539 338 aa11.51□□□□□ -0.57
NUP54-203ENST00000504173 BECN1Q14457 450 aa11.51□□□□□ -0.57
NUP54-203ENST00000504173 TYW1BQ6NUM6 668 aa11.51□□□□□ -0.57
NUP54-203ENST00000504173 SLC30A10Q6XR72 485 aa11.51□□□□□ -0.57
NUP54-203ENST00000504173 TBC1D5Q92609 795 aa11.51□□□□□ -0.57
NUP54-203ENST00000504173 APBA2Q99767 749 aa11.51□□□□□ -0.57
NUP54-203ENST00000504173 MAF1Q9H063 256 aa11.51□□□□□ -0.57
NUP54-203ENST00000504173 PSTPIP2Q9H939 334 aa11.51□□□□□ -0.57
NUP54-203ENST00000504173 C6orf50Q9HD87 102 aa11.51□□□□□ -0.57
NUP54-203ENST00000504173 SH3GLB2Q9NR46 395 aa11.51□□□□□ -0.57
NUP54-203ENST00000504173 CYP39A1Q9NYL5 469 aa11.51□□□□□ -0.57
NUP54-203ENST00000504173 SMC3Q9UQE7 1217 aa11.51□□□□□ -0.57
NUP54-203ENST00000504173 KIF3AQ9Y496 699 aa11.51□□□□□ -0.57
NUP54-203ENST00000504173 ESYT2A0FGR8 921 aa11.5□□□□□ -0.57
NUP54-203ENST00000504173 COBLO75128 1261 aa11.5□□□□□ -0.57
NUP54-203ENST00000504173 GJB2P29033 226 aa11.5□□□□□ -0.57
NUP54-203ENST00000504173 GNA11P29992 359 aa11.5□□□□□ -0.57
NUP54-203ENST00000504173 HOXA13P31271 388 aaPredicted RBP11.5□□□□□ -0.57
NUP54-203ENST00000504173 HSD17B4P51659 736 aa11.5□□□□□ -0.57
NUP54-203ENST00000504173 MRPL12P52815 198 aaKnown RBP11.5□□□□□ -0.57
NUP54-203ENST00000504173 NLRP5P59047 1200 aa11.5□□□□□ -0.57
NUP54-203ENST00000504173 SAMD3Q8N6K7 520 aa11.5□□□□□ -0.57
NUP54-203ENST00000504173 SYTL5Q8TDW5 730 aaPredicted RBP11.5□□□□□ -0.57
NUP54-203ENST00000504173 PPM1EQ8WY54 764 aa11.5□□□□□ -0.57
NUP54-203ENST00000504173 USP6NLQ92738 828 aa11.5□□□□□ -0.57
NUP54-203ENST00000504173 GLT8D2Q9H1C3 349 aa11.5□□□□□ -0.57
NUP54-203ENST00000504173 RIC8AQ9NPQ8 531 aa11.5□□□□□ -0.57
NUP54-203ENST00000504173 MAP3K20Q9NYL2 800 aaKnown RBP11.5□□□□□ -0.57
NUP54-203ENST00000504173 ZNFX1Q9P2E3 1918 aaKnown RBP11.5□□□□□ -0.57
NUP54-203ENST00000504173 DNAJC25-GNG10A0A024R161 153 aa11.49□□□□□ -0.57
NUP54-203ENST00000504173 HOXC6P09630 235 aa11.49□□□□□ -0.57
NUP54-203ENST00000504173 XRCC5P13010 732 aaKnown RBP11.49□□□□□ -0.57
NUP54-203ENST00000504173 RTP1P59025 263 aa11.49□□□□□ -0.57
NUP54-203ENST00000504173 CNTN2Q02246 1040 aa11.49□□□□□ -0.57
NUP54-203ENST00000504173 GHRHRQ02643 423 aa11.49□□□□□ -0.57
NUP54-203ENST00000504173 TRIM29Q14134 588 aa11.49□□□□□ -0.57
NUP54-203ENST00000504173 UBE2SQ16763 222 aa11.49□□□□□ -0.57
NUP54-203ENST00000504173 ZNF792Q3KQV3 632 aa11.49□□□□□ -0.57
NUP54-203ENST00000504173 USP17L6PQ6QN14 398 aa11.49□□□□□ -0.57
NUP54-203ENST00000504173 FCHSD1Q86WN1 690 aa11.49□□□□□ -0.57
NUP54-203ENST00000504173 FAM177A1Q8N128 213 aaPredicted RBP11.49□□□□□ -0.57
NUP54-203ENST00000504173 FAM133AQ8N9E0 248 aa11.49□□□□□ -0.57
NUP54-203ENST00000504173 NPLOC4Q8TAT6 608 aa11.49□□□□□ -0.57
NUP54-203ENST00000504173 BADQ92934 168 aa11.49□□□□□ -0.57
NUP54-203ENST00000504173 INTS4Q96HW7 963 aaKnown RBP11.49□□□□□ -0.57
NUP54-203ENST00000504173 C8orf76Q96K31 380 aa11.49□□□□□ -0.57
NUP54-203ENST00000504173 PURBQ96QR8 312 aaKnown RBP11.49□□□□□ -0.57
NUP54-203ENST00000504173 ZMYND12Q9H0C1 365 aa11.49□□□□□ -0.57
NUP54-203ENST00000504173 FOXD4L1Q9NU39 408 aa11.49□□□□□ -0.57
NUP54-203ENST00000504173 COL20A1Q9P218 1284 aa11.49□□□□□ -0.57
NUP54-203ENST00000504173 ADD3Q9UEY8 706 aaKnown RBP11.49□□□□□ -0.57
NUP54-203ENST00000504173 KCNJ14Q9UNX9 436 aa11.49□□□□□ -0.57
NUP54-203ENST00000504173 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.48□□□□□ -0.57
NUP54-203ENST00000504173 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.48□□□□□ -0.57
NUP54-203ENST00000504173 PIK3CDO00329 1044 aa11.48□□□□□ -0.57
NUP54-203ENST00000504173 MEIS2O14770 477 aa11.48□□□□□ -0.57
NUP54-203ENST00000504173 ANP32AP39687 249 aaKnown RBP11.48□□□□□ -0.57
NUP54-203ENST00000504173 NHLH1Q02575 133 aa11.48□□□□□ -0.57
NUP54-203ENST00000504173 AAK1Q2M2I8 961 aa11.48□□□□□ -0.57
NUP54-203ENST00000504173 GALNT17Q6IS24 598 aa11.48□□□□□ -0.57
NUP54-203ENST00000504173 TEX2Q8IWB9 1127 aa11.48□□□□□ -0.57
NUP54-203ENST00000504173 TRMT44Q8IYL2 757 aaKnown RBP11.48□□□□□ -0.57
NUP54-203ENST00000504173 BICD2Q8TD16 824 aa11.48□□□□□ -0.57
NUP54-203ENST00000504173 TIFAQ96CG3 184 aa11.48□□□□□ -0.57
NUP54-203ENST00000504173 MAML3Q96JK9 1138 aa11.48□□□□□ -0.57
NUP54-203ENST00000504173 RNPC3Q96LT9 517 aaKnown RBP11.48□□□□□ -0.57
NUP54-203ENST00000504173 SENP6Q9GZR1 1112 aaPredicted RBP11.48□□□□□ -0.57
NUP54-203ENST00000504173 GJB4Q9NTQ9 266 aa11.48□□□□□ -0.57
NUP54-203ENST00000504173 PCDHA4Q9UN74 947 aa11.48□□□□□ -0.57
NUP54-203ENST00000504173 DIS3Q9Y2L1 958 aaKnown RBP11.48□□□□□ -0.57
NUP54-203ENST00000504173 PLXNA1Q9UIW2 1896 aa11.47□□□□□ -0.57
NUP54-203ENST00000504173 SOWAHBA6NEL2 793 aa11.47□□□□□ -0.57
NUP54-203ENST00000504173 SPDYE3A6NKU9 549 aa11.47□□□□□ -0.57
NUP54-203ENST00000504173 ALDH5A1P51649 535 aaPredicted RBP11.47□□□□□ -0.57
NUP54-203ENST00000504173 GUCY1B3Q02153 619 aa11.47□□□□□ -0.57
NUP54-203ENST00000504173 CCL14Q16627 93 aa11.47□□□□□ -0.57
NUP54-203ENST00000504173 ARHGEF16Q5VV41 709 aa11.47□□□□□ -0.57
NUP54-203ENST00000504173 JAKMIP3Q5VZ66 844 aa11.47□□□□□ -0.57
NUP54-203ENST00000504173 OLFML2BQ68BL8 750 aa11.47□□□□□ -0.57
NUP54-203ENST00000504173 KRT40Q6A162 431 aa11.47□□□□□ -0.57
NUP54-203ENST00000504173 ZNF467Q7Z7K2 595 aaPredicted RBP11.47□□□□□ -0.57
NUP54-203ENST00000504173 BLIDQ8IZY5 108 aa11.47□□□□□ -0.57
NUP54-203ENST00000504173 REXO1Q8N1G1 1221 aaKnown RBP11.47□□□□□ -0.57
NUP54-203ENST00000504173 DAGLBQ8NCG7 672 aa11.47□□□□□ -0.57
NUP54-203ENST00000504173 DNERQ8NFT8 737 aa11.47□□□□□ -0.57
NUP54-203ENST00000504173 NSUN6Q8TEA1 469 aaKnown RBP11.47□□□□□ -0.57
NUP54-203ENST00000504173 FGD4Q96M96 766 aa11.47□□□□□ -0.57
NUP54-203ENST00000504173 TAAR1Q96RJ0 339 aa11.47□□□□□ -0.57
NUP54-203ENST00000504173 RMDN3Q96TC7 470 aa11.47□□□□□ -0.57
NUP54-203ENST00000504173 MPHOSPH6Q99547 160 aaKnown RBP11.47□□□□□ -0.57
NUP54-203ENST00000504173 PHF20Q9BVI0 1012 aa11.47□□□□□ -0.57
NUP54-203ENST00000504173 KCNH6Q9H252 994 aa11.47□□□□□ -0.57
NUP54-203ENST00000504173 TSPYL2Q9H2G4 693 aaPredicted RBP11.47□□□□□ -0.57
NUP54-203ENST00000504173 BRMS1Q9HCU9 246 aa11.47□□□□□ -0.57
NUP54-203ENST00000504173 LCTP09848 1927 aa11.47□□□□□ -0.57
NUP54-203ENST00000504173 REV3LO60673 3130 aa11.46□□□□□ -0.57
NUP54-203ENST00000504173 ASB14A6NK59 587 aa11.46□□□□□ -0.57
NUP54-203ENST00000504173 B4DLN1 442 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms