RNA–Protein interactions for RNA: ENST00000495755.1

VPS52-221, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 453 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-221ENST00000495755 CCDC69A6NI79 296 aa8.35□□□□□ -1.07
VPS52-221ENST00000495755 CDC45O75419 566 aa8.35□□□□□ -1.07
VPS52-221ENST00000495755 MMP3P08254 477 aa8.35□□□□□ -1.07
VPS52-221ENST00000495755 SUPT20HL2P0C7V6 817 aa8.35□□□□□ -1.07
VPS52-221ENST00000495755 CALM1P0DP23 149 aa8.35□□□□□ -1.07
VPS52-221ENST00000495755 CALM2P0DP24 149 aa8.35□□□□□ -1.07
VPS52-221ENST00000495755 CALM3P0DP25 149 aa8.35□□□□□ -1.07
VPS52-221ENST00000495755 GNAQP50148 359 aa8.35□□□□□ -1.07
VPS52-221ENST00000495755 EXOSC10Q01780 885 aaKnown RBP8.35□□□□□ -1.07
VPS52-221ENST00000495755 PTPN11Q06124 597 aaPredicted RBP8.35□□□□□ -1.07
VPS52-221ENST00000495755 LAMC2Q13753 1193 aa8.35□□□□□ -1.07
VPS52-221ENST00000495755 PGM5Q15124 567 aa8.35□□□□□ -1.07
VPS52-221ENST00000495755 TSGA10IPQ3SY00 556 aa8.35□□□□□ -1.07
VPS52-221ENST00000495755 NFRKBQ6P4R8 1299 aa8.35□□□□□ -1.07
VPS52-221ENST00000495755 NFXL1Q6ZNB6 911 aa8.35□□□□□ -1.07
VPS52-221ENST00000495755 SGMS1Q86VZ5 419 aa8.35□□□□□ -1.07
VPS52-221ENST00000495755 RASEFQ8IZ41 740 aa8.35□□□□□ -1.07
VPS52-221ENST00000495755 SRBD1Q8N5C6 995 aaKnown RBP8.35□□□□□ -1.07
VPS52-221ENST00000495755 IL31RAQ8NI17 732 aa8.35□□□□□ -1.07
VPS52-221ENST00000495755 PIBF1Q8WXW3 757 aa8.35□□□□□ -1.07
VPS52-221ENST00000495755 KAT2BQ92831 832 aa8.35□□□□□ -1.07
VPS52-221ENST00000495755 VWCEQ96DN2 955 aa8.35□□□□□ -1.07
VPS52-221ENST00000495755 RRP36Q96EU6 259 aaKnown RBP8.35□□□□□ -1.07
VPS52-221ENST00000495755 GUCD1Q96NT3 240 aa8.35□□□□□ -1.07
VPS52-221ENST00000495755 WNT8AQ9H1J5 351 aa8.35□□□□□ -1.07
VPS52-221ENST00000495755 SEMA6BQ9H3T3 888 aa8.35□□□□□ -1.07
VPS52-221ENST00000495755 IL23AQ9NPF7 189 aa8.35□□□□□ -1.07
VPS52-221ENST00000495755 MYH6P13533 1939 aa8.35□□□□□ -1.07
VPS52-221ENST00000495755 FRMPD4Q14CM0 1322 aa8.34□□□□□ -1.07
VPS52-221ENST00000495755 BAZ2BQ9UIF8 2168 aaKnown RBP8.34□□□□□ -1.07
VPS52-221ENST00000495755 SCN10AQ9Y5Y9 1956 aa8.34□□□□□ -1.07
VPS52-221ENST00000495755 HSFX4A0A1B0GTS1 333 aaPredicted RBP8.34□□□□□ -1.07
VPS52-221ENST00000495755 HSFX3A0A1B0GWH4 333 aaPredicted RBP8.34□□□□□ -1.07
VPS52-221ENST00000495755 PIK3CDO00329 1044 aa8.34□□□□□ -1.07
VPS52-221ENST00000495755 PLEKHA8P1O95397 391 aa8.34□□□□□ -1.07
VPS52-221ENST00000495755 ACRP10323 421 aa8.34□□□□□ -1.07
VPS52-221ENST00000495755 CYP2C9P11712 490 aa8.34□□□□□ -1.07
VPS52-221ENST00000495755 MYCLP12524 364 aaPredicted RBP8.34□□□□□ -1.07
VPS52-221ENST00000495755 HOXD8P13378 290 aaPredicted RBP8.34□□□□□ -1.07
VPS52-221ENST00000495755 CCL23P55773 120 aa8.34□□□□□ -1.07
VPS52-221ENST00000495755 SP2Q02086 613 aa8.34□□□□□ -1.07
VPS52-221ENST00000495755 CELF3Q5SZQ8 465 aaKnown RBP8.34□□□□□ -1.07
VPS52-221ENST00000495755 ZNF697Q5TEC3 545 aa8.34□□□□□ -1.07
VPS52-221ENST00000495755 RNF20Q5VTR2 975 aa8.34□□□□□ -1.07
VPS52-221ENST00000495755 KCNV1Q6PIU1 500 aa8.34□□□□□ -1.07
VPS52-221ENST00000495755 ZNF365Q70YC5 407 aa8.34□□□□□ -1.07
VPS52-221ENST00000495755 SESTD1Q86VW0 696 aa8.34□□□□□ -1.07
VPS52-221ENST00000495755 FCHSD1Q86WN1 690 aa8.34□□□□□ -1.07
VPS52-221ENST00000495755 DHX37Q8IY37 1157 aaKnown RBP8.34□□□□□ -1.07
VPS52-221ENST00000495755 CMTR1Q8N1G2 835 aaKnown RBP8.34□□□□□ -1.07
VPS52-221ENST00000495755 FANCBQ8NB91 859 aa8.34□□□□□ -1.07
VPS52-221ENST00000495755 PPTC7Q8NI37 304 aa8.34□□□□□ -1.07
VPS52-221ENST00000495755 PPP1R13LQ8WUF5 828 aa8.34□□□□□ -1.07
VPS52-221ENST00000495755 HERVK_113Q902F9 699 aa8.34□□□□□ -1.07
VPS52-221ENST00000495755 CCDC136Q96JN2 1154 aa8.34□□□□□ -1.07
VPS52-221ENST00000495755 NEK1Q96PY6 1258 aa8.34□□□□□ -1.07
VPS52-221ENST00000495755 LRRC2Q9BYS8 371 aa8.34□□□□□ -1.07
VPS52-221ENST00000495755 TTYH1Q9H313 450 aaPredicted RBP8.34□□□□□ -1.07
VPS52-221ENST00000495755 SLC12A7Q9Y666 1083 aa8.34□□□□□ -1.07
VPS52-221ENST00000495755 MRVI1Q9Y6F6 885 aa8.34□□□□□ -1.07
VPS52-221ENST00000495755 TMEM265A0A087WTH1 108 aa8.33□□□□□ -1.08
VPS52-221ENST00000495755 MEIS2O14770 477 aa8.33□□□□□ -1.08
VPS52-221ENST00000495755 FGBP02675 491 aa8.33□□□□□ -1.08
VPS52-221ENST00000495755 TGFB3P10600 412 aa8.33□□□□□ -1.08
VPS52-221ENST00000495755 RXRAP19793 462 aa8.33□□□□□ -1.08
VPS52-221ENST00000495755 CASTP20810 708 aaKnown RBP8.33□□□□□ -1.08
VPS52-221ENST00000495755 CCND2P30279 289 aa8.33□□□□□ -1.08
VPS52-221ENST00000495755 MRPS9P82933 396 aaKnown RBP8.33□□□□□ -1.08
VPS52-221ENST00000495755 DGKDQ16760 1214 aa8.33□□□□□ -1.08
VPS52-221ENST00000495755 ADCK5Q3MIX3 580 aa8.33□□□□□ -1.08
VPS52-221ENST00000495755 FAM47CQ5HY64 1035 aa8.33□□□□□ -1.08
VPS52-221ENST00000495755 MYSM1Q5VVJ2 828 aa8.33□□□□□ -1.08
VPS52-221ENST00000495755 PSRC1Q6PGN9 363 aaPredicted RBP8.33□□□□□ -1.08
VPS52-221ENST00000495755 USP17L6PQ6QN14 398 aa8.33□□□□□ -1.08
VPS52-221ENST00000495755 TMTC3Q6ZXV5 915 aa8.33□□□□□ -1.08
VPS52-221ENST00000495755 DHX32Q7L7V1 743 aaKnown RBP8.33□□□□□ -1.08
VPS52-221ENST00000495755 RAB11FIP4Q86YS3 637 aa8.33□□□□□ -1.08
VPS52-221ENST00000495755 RPUSD2Q8IZ73 545 aaKnown RBP8.33□□□□□ -1.08
VPS52-221ENST00000495755 GPKOWQ92917 476 aaPredicted RBP eCLIP8.33□□□□□ -1.08
VPS52-221ENST00000495755 KCNB2Q92953 911 aa8.33□□□□□ -1.08
VPS52-221ENST00000495755 ZFP91Q96JP5 570 aaPredicted RBP8.33□□□□□ -1.08
VPS52-221ENST00000495755 FAM161BQ96MY7 647 aa8.33□□□□□ -1.08
VPS52-221ENST00000495755 INPP4AQ96PE3 977 aaPredicted RBP8.33□□□□□ -1.08
VPS52-221ENST00000495755 CTAGE1Q96RT6 745 aa8.33□□□□□ -1.08
VPS52-221ENST00000495755 CXXC1Q9P0U4 656 aaPredicted RBP8.33□□□□□ -1.08
VPS52-221ENST00000495755 SEC63Q9UGP8 760 aaKnown RBP8.33□□□□□ -1.08
VPS52-221ENST00000495755 BRPF3Q9ULD4 1205 aa8.33□□□□□ -1.08
VPS52-221ENST00000495755 KIAA1217Q5T5P2 1943 aa8.33□□□□□ -1.08
VPS52-221ENST00000495755 REV3LO60673 3130 aa8.32□□□□□ -1.08
VPS52-221ENST00000495755 GRXCR1A8MXD5 290 aa8.32□□□□□ -1.08
VPS52-221ENST00000495755 SPATA31C2B4DYI2 1134 aa8.32□□□□□ -1.08
VPS52-221ENST00000495755 HAS3O00219 553 aa8.32□□□□□ -1.08
VPS52-221ENST00000495755 PITPNM1O00562 1244 aa8.32□□□□□ -1.08
VPS52-221ENST00000495755 PPFIA4O75335 1185 aa8.32□□□□□ -1.08
VPS52-221ENST00000495755 STAM2O75886 525 aa8.32□□□□□ -1.08
VPS52-221ENST00000495755 GGPS1O95749 300 aa8.32□□□□□ -1.08
VPS52-221ENST00000495755 F2P00734 622 aa8.32□□□□□ -1.08
VPS52-221ENST00000495755 UBA1P22314 1058 aaKnown RBP8.32□□□□□ -1.08
VPS52-221ENST00000495755 ICAM3P32942 547 aa8.32□□□□□ -1.08
VPS52-221ENST00000495755 PSEN2P49810 448 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms