RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 USP17L11C9JVI0 530 aa18.4■□□□□ 0.54
CCDC88B-210ENST00000494566 USP17L18D6R9N7 530 aa18.4■□□□□ 0.54
CCDC88B-210ENST00000494566 USP17L22D6RA61 530 aa18.4■□□□□ 0.54
CCDC88B-210ENST00000494566 USP17L17D6RBQ6 530 aa18.4■□□□□ 0.54
CCDC88B-210ENST00000494566 USP17L19D6RCP7 530 aa18.4■□□□□ 0.54
CCDC88B-210ENST00000494566 USP17L20D6RJB6 530 aa18.4■□□□□ 0.54
CCDC88B-210ENST00000494566 MYO1CO00159 1063 aa18.4■□□□□ 0.54
CCDC88B-210ENST00000494566 MAP2K7O14733 419 aa18.4■□□□□ 0.54
CCDC88B-210ENST00000494566 ONECUT3O60422 494 aaPredicted RBP18.4■□□□□ 0.54
CCDC88B-210ENST00000494566 SRGNP10124 158 aa18.4■□□□□ 0.54
CCDC88B-210ENST00000494566 RBM5P52756 815 aaKnown RBP eCLIP18.4■□□□□ 0.54
CCDC88B-210ENST00000494566 ZNF543Q08ER8 600 aa18.4■□□□□ 0.54
CCDC88B-210ENST00000494566 USP17L24Q0WX57 530 aa18.4■□□□□ 0.54
CCDC88B-210ENST00000494566 PTPROQ16827 1216 aa18.4■□□□□ 0.54
CCDC88B-210ENST00000494566 WDR59Q6PJI9 974 aa18.4■□□□□ 0.54
CCDC88B-210ENST00000494566 USP17L6PQ6QN14 398 aa18.4■□□□□ 0.54
CCDC88B-210ENST00000494566 SNX29Q8TEQ0 813 aa18.4■□□□□ 0.54
CCDC88B-210ENST00000494566 ZNF622Q969S3 477 aaKnown RBP eCLIP18.4■□□□□ 0.546e-7■■■■■ 27
CCDC88B-210ENST00000494566 CDK5RAP3Q96JB5 506 aa18.4■□□□□ 0.54
CCDC88B-210ENST00000494566 EHD4Q9H223 541 aa18.4■□□□□ 0.54
CCDC88B-210ENST00000494566 SEMA6BQ9H3T3 888 aa18.4■□□□□ 0.54
CCDC88B-210ENST00000494566 ERLIN1O75477 346 aa18.39■□□□□ 0.54
CCDC88B-210ENST00000494566 TBC1D8BQ0IIM8 1120 aa18.39■□□□□ 0.54
CCDC88B-210ENST00000494566 CCDC51Q96ER9 411 aa18.39■□□□□ 0.54
CCDC88B-210ENST00000494566 THAP9Q9H5L6 903 aa18.39■□□□□ 0.54
CCDC88B-210ENST00000494566 SSBP05455 408 aaKnown RBP eCLIP18.39■□□□□ 0.53
CCDC88B-210ENST00000494566 CCNE1P24864 410 aa18.39■□□□□ 0.53
CCDC88B-210ENST00000494566 NOVP48745 357 aa18.39■□□□□ 0.53
CCDC88B-210ENST00000494566 HERVK_113P62684 666 aa18.39■□□□□ 0.53
CCDC88B-210ENST00000494566 CACNB1Q02641 598 aaPredicted RBP18.39■□□□□ 0.53
CCDC88B-210ENST00000494566 APOBEC3HQ6NTF7 200 aaKnown RBP18.39■□□□□ 0.53
CCDC88B-210ENST00000494566 COL23A1Q86Y22 540 aaPredicted RBP18.39■□□□□ 0.53
CCDC88B-210ENST00000494566 DNAJC18Q9H819 358 aa18.39■□□□□ 0.53
CCDC88B-210ENST00000494566 EEF1GP26641 437 aaKnown RBP18.39■□□□□ 0.53
CCDC88B-210ENST00000494566 RNASE9P60153 205 aaKnown RBP18.39■□□□□ 0.53
CCDC88B-210ENST00000494566 ASPRV1Q53RT3 343 aa18.39■□□□□ 0.53
CCDC88B-210ENST00000494566 SV2BQ7L1I2 683 aa18.39■□□□□ 0.53
CCDC88B-210ENST00000494566 C7orf25Q9BPX7 421 aa18.39■□□□□ 0.53
CCDC88B-210ENST00000494566 NOC4LQ9BVI4 516 aaKnown RBP18.39■□□□□ 0.53
CCDC88B-210ENST00000494566 TBC1D7Q9P0N9 293 aa18.39■□□□□ 0.53
CCDC88B-210ENST00000494566 IGKV6D-41A0A0C4DH26 115 aa18.38■□□□□ 0.53
CCDC88B-210ENST00000494566 FECHP22830 423 aa18.38■□□□□ 0.53
CCDC88B-210ENST00000494566 KRT27Q7Z3Y8 459 aa18.38■□□□□ 0.53
CCDC88B-210ENST00000494566 ZSCAN29Q8IWY8 852 aaPredicted RBP18.38■□□□□ 0.53
CCDC88B-210ENST00000494566 OR8K1Q8NGG5 319 aa18.38■□□□□ 0.53
CCDC88B-210ENST00000494566 KANSL2Q9H9L4 492 aa18.38■□□□□ 0.53
CCDC88B-210ENST00000494566 PDE2AO00408 941 aaPredicted RBP18.38■□□□□ 0.53
CCDC88B-210ENST00000494566 MARCH6O60337 910 aa18.38■□□□□ 0.53
CCDC88B-210ENST00000494566 NT5C2P49902 561 aa18.38■□□□□ 0.53
CCDC88B-210ENST00000494566 TSR1Q2NL82 804 aaKnown RBP18.38■□□□□ 0.53
CCDC88B-210ENST00000494566 ANKRD31Q8N7Z5 1873 aa18.38■□□□□ 0.53
CCDC88B-210ENST00000494566 HDAC7Q8WUI4 952 aa18.38■□□□□ 0.53
CCDC88B-210ENST00000494566 LARP4BQ92615 738 aaKnown RBP18.38■□□□□ 0.53
CCDC88B-210ENST00000494566 SNHG28P0DPA3 235 aa18.37■□□□□ 0.53
CCDC88B-210ENST00000494566 SLC27A3Q5K4L6 730 aa18.37■□□□□ 0.53
CCDC88B-210ENST00000494566 DHTKD1Q96HY7 919 aaPredicted RBP18.37■□□□□ 0.53
CCDC88B-210ENST00000494566 FAM207AQ9NSI2 230 aaPredicted RBP18.37■□□□□ 0.53
CCDC88B-210ENST00000494566 RRP15Q9Y3B9 282 aaKnown RBP18.37■□□□□ 0.53
CCDC88B-210ENST00000494566 KLRG2A4D1S0 409 aaPredicted RBP18.37■□□□□ 0.53
CCDC88B-210ENST00000494566 DDTLA6NHG4 134 aaPredicted RBP18.37■□□□□ 0.53
CCDC88B-210ENST00000494566 RNF40O75150 1001 aa18.37■□□□□ 0.53
CCDC88B-210ENST00000494566 MMP10P09238 476 aa18.37■□□□□ 0.53
CCDC88B-210ENST00000494566 ACTN2P35609 894 aa18.37■□□□□ 0.53
CCDC88B-210ENST00000494566 MIIPQ5JXC2 388 aa18.37■□□□□ 0.53
CCDC88B-210ENST00000494566 CCDC47Q96A33 483 aaKnown RBP18.37■□□□□ 0.53
CCDC88B-210ENST00000494566 MYH10P35580 1976 aa18.37■□□□□ 0.53
CCDC88B-210ENST00000494566 FOCADQ5VW36 1801 aa18.37■□□□□ 0.53
CCDC88B-210ENST00000494566 MYH7BA7E2Y1 1941 aa18.36■□□□□ 0.53
CCDC88B-210ENST00000494566 LTBP1Q14766 1721 aa18.36■□□□□ 0.53
CCDC88B-210ENST00000494566 PNMA6FA0A0J9YX94 578 aa18.36■□□□□ 0.53
CCDC88B-210ENST00000494566 EPHB6O15197 1021 aa18.36■□□□□ 0.53
CCDC88B-210ENST00000494566 TRIM14Q14142 442 aa18.36■□□□□ 0.53
CCDC88B-210ENST00000494566 CCDC155Q8N6L0 562 aa18.36■□□□□ 0.53
CCDC88B-210ENST00000494566 TEKT1Q969V4 418 aa18.36■□□□□ 0.53
CCDC88B-210ENST00000494566 MLXIPQ9HAP2 919 aa18.36■□□□□ 0.53
CCDC88B-210ENST00000494566 DDX25Q9UHL0 483 aaKnown RBP18.36■□□□□ 0.53
CCDC88B-210ENST00000494566 ESYT2A0FGR8 921 aa18.36■□□□□ 0.53
CCDC88B-210ENST00000494566 NCK2O43639 380 aa18.36■□□□□ 0.53
CCDC88B-210ENST00000494566 GDF11O95390 407 aa18.36■□□□□ 0.53
CCDC88B-210ENST00000494566 MYL1P05976 194 aa18.36■□□□□ 0.53
CCDC88B-210ENST00000494566 CRKP46108 304 aa18.36■□□□□ 0.53
CCDC88B-210ENST00000494566 HAS1Q92839 578 aa18.36■□□□□ 0.53
CCDC88B-210ENST00000494566 JAKMIP2Q96AA8 810 aa18.36■□□□□ 0.53
CCDC88B-210ENST00000494566 CUEDC2Q9H467 287 aa18.36■□□□□ 0.53
CCDC88B-210ENST00000494566 MYH4Q9Y623 1939 aa18.36■□□□□ 0.53
CCDC88B-210ENST00000494566 EIF3JO75822 258 aaKnown RBP18.36■□□□□ 0.53
CCDC88B-210ENST00000494566 DNM2P50570 870 aa18.36■□□□□ 0.53
CCDC88B-210ENST00000494566 TMEM266Q2M3C6 531 aa18.36■□□□□ 0.53
CCDC88B-210ENST00000494566 TMC4Q7Z404 712 aa18.36■□□□□ 0.53
CCDC88B-210ENST00000494566 DDX12PQ92771 950 aa18.36■□□□□ 0.53
CCDC88B-210ENST00000494566 FGFBP2Q9BYJ0 223 aa18.36■□□□□ 0.53
CCDC88B-210ENST00000494566 CAPN11Q9UMQ6 739 aa18.36■□□□□ 0.53
CCDC88B-210ENST00000494566 NPHP3-ACAD11A0A0J9YXS1 232 aa18.35■□□□□ 0.53
CCDC88B-210ENST00000494566 TULP2O00295 520 aa18.35■□□□□ 0.53
CCDC88B-210ENST00000494566 AMPD3Q01432 767 aa18.35■□□□□ 0.53
CCDC88B-210ENST00000494566 EXOC4Q96A65 974 aa18.35■□□□□ 0.53
CCDC88B-210ENST00000494566 PSTPIP2Q9H939 334 aa18.35■□□□□ 0.53
CCDC88B-210ENST00000494566 ATP8B1O43520 1251 aa18.35■□□□□ 0.53
CCDC88B-210ENST00000494566 SMARCA1P28370 1054 aa18.35■□□□□ 0.53
CCDC88B-210ENST00000494566 STAT3P40763 770 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms