RNA–Protein interactions for RNA: ENST00000493886.5

VCP-207, Transcript of valosin containing protein, humanhuman

TSL 2

Gene VCP, Length 2,942 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-207ENST00000493886 SV2BQ7L1I2 683 aa15.39■□□□□ 0.05
VCP-207ENST00000493886 MRPL44Q9H9J2 332 aaKnown RBP15.39■□□□□ 0.05
VCP-207ENST00000493886 ZNF277Q9NRM2 450 aaPredicted RBP15.39■□□□□ 0.05
VCP-207ENST00000493886 FHOD1Q9Y613 1164 aa15.39■□□□□ 0.05
VCP-207ENST00000493886 CLRN2A0PK11 232 aa15.38■□□□□ 0.05
VCP-207ENST00000493886 PNMA6AP0CW24 399 aaPredicted RBP15.38■□□□□ 0.05
VCP-207ENST00000493886 KRT79Q5XKE5 535 aa15.38■□□□□ 0.05
VCP-207ENST00000493886 IRF2BP1Q8IU81 584 aa15.38■□□□□ 0.05
VCP-207ENST00000493886 SNX29Q8TEQ0 813 aa15.38■□□□□ 0.05
VCP-207ENST00000493886 HAS1Q92839 578 aa15.38■□□□□ 0.05
VCP-207ENST00000493886 DHTKD1Q96HY7 919 aaPredicted RBP15.38■□□□□ 0.05
VCP-207ENST00000493886 TRERF1Q96PN7 1200 aa15.38■□□□□ 0.05
VCP-207ENST00000493886 PANX2Q96RD6 677 aa15.38■□□□□ 0.05
VCP-207ENST00000493886 GMLQ99445 158 aa15.38■□□□□ 0.05
VCP-207ENST00000493886 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.38■□□□□ 0.05
VCP-207ENST00000493886 HERC5Q9UII4 1024 aaKnown RBP15.38■□□□□ 0.05
VCP-207ENST00000493886 HDAC9Q9UKV0 1011 aa15.38■□□□□ 0.05
VCP-207ENST00000493886 ITIH6Q6UXX5 1313 aa15.38■□□□□ 0.05
VCP-207ENST00000493886 TUBB4AP04350 444 aa15.38■□□□□ 0.05
VCP-207ENST00000493886 DPEP1P16444 411 aa15.38■□□□□ 0.05
VCP-207ENST00000493886 DLGAP5Q15398 846 aa15.38■□□□□ 0.05
VCP-207ENST00000493886 NAP1L4Q99733 375 aaKnown RBP15.38■□□□□ 0.05
VCP-207ENST00000493886 POLR3GO15318 223 aaPredicted RBP15.37■□□□□ 0.05
VCP-207ENST00000493886 KCNA3P22001 575 aa15.37■□□□□ 0.05
VCP-207ENST00000493886 SNAP25P60880 206 aa15.37■□□□□ 0.05
VCP-207ENST00000493886 IKQ13123 557 aaPredicted RBP15.37■□□□□ 0.05
VCP-207ENST00000493886 MCM6Q14566 821 aa15.37■□□□□ 0.05
VCP-207ENST00000493886 SYDE2Q5VT97 1194 aa15.37■□□□□ 0.05
VCP-207ENST00000493886 TMCO3Q6UWJ1 677 aa15.37■□□□□ 0.05
VCP-207ENST00000493886 LARP4BQ92615 738 aaKnown RBP15.37■□□□□ 0.05
VCP-207ENST00000493886 TRIM47Q96LD4 638 aa15.37■□□□□ 0.05
VCP-207ENST00000493886 NUDT12Q9BQG2 462 aa15.37■□□□□ 0.05
VCP-207ENST00000493886 AMNQ9BXJ7 453 aa15.37■□□□□ 0.05
VCP-207ENST00000493886 ANO3Q9BYT9 981 aa15.37■□□□□ 0.05
VCP-207ENST00000493886 YY1AP1Q9H869 796 aa15.37■□□□□ 0.05
VCP-207ENST00000493886 ZNF70Q9UC06 446 aaPredicted RBP15.37■□□□□ 0.05
VCP-207ENST00000493886 MARCH6O60337 910 aa15.37■□□□□ 0.05
VCP-207ENST00000493886 BMP3P12645 472 aa15.37■□□□□ 0.05
VCP-207ENST00000493886 STK4Q13043 487 aa15.37■□□□□ 0.05
VCP-207ENST00000493886 BMS1Q14692 1282 aaKnown RBP15.37■□□□□ 0.05
VCP-207ENST00000493886 TTI2Q6NXR4 508 aa15.37■□□□□ 0.05
VCP-207ENST00000493886 THAP9Q9H5L6 903 aa15.37■□□□□ 0.05
VCP-207ENST00000493886 COL4A5P29400 1685 aa15.37■□□□□ 0.05
VCP-207ENST00000493886 A0A1W2PRG0 241 aa15.37■□□□□ 0.05
VCP-207ENST00000493886 FCER1AP12319 257 aa15.37■□□□□ 0.05
VCP-207ENST00000493886 DEFB132Q7Z7B7 95 aa15.37■□□□□ 0.05
VCP-207ENST00000493886 OGFOD1Q8N543 542 aa15.37■□□□□ 0.05
VCP-207ENST00000493886 GJA10Q969M2 543 aa15.37■□□□□ 0.05
VCP-207ENST00000493886 SRRTQ9BXP5 876 aaKnown RBP15.37■□□□□ 0.05
VCP-207ENST00000493886 ZBTB12Q9Y330 459 aaPredicted RBP15.37■□□□□ 0.05
VCP-207ENST00000493886 MYMKA6NI61 221 aa15.36■□□□□ 0.05
VCP-207ENST00000493886 MEIS2O14770 477 aa15.36■□□□□ 0.05
VCP-207ENST00000493886 MFAP3LO75121 409 aa15.36■□□□□ 0.05
VCP-207ENST00000493886 TFRCP02786 760 aaKnown RBP15.36■□□□□ 0.05
VCP-207ENST00000493886 GYPCP04921 128 aa15.36■□□□□ 0.05
VCP-207ENST00000493886 CCNE1P24864 410 aa15.36■□□□□ 0.05
VCP-207ENST00000493886 BAG6P46379 1132 aa15.36■□□□□ 0.05
VCP-207ENST00000493886 USP11P51784 963 aa15.36■□□□□ 0.05
VCP-207ENST00000493886 PPP2R3AQ06190 1150 aa15.36■□□□□ 0.05
VCP-207ENST00000493886 TMEM119Q4V9L6 283 aa15.36■□□□□ 0.05
VCP-207ENST00000493886 CNNM4Q6P4Q7 775 aa15.36■□□□□ 0.05
VCP-207ENST00000493886 FBXO11Q86XK2 927 aa15.36■□□□□ 0.05
VCP-207ENST00000493886 FAM151AQ8WW52 585 aa15.36■□□□□ 0.05
VCP-207ENST00000493886 RAD54LQ92698 747 aa15.36■□□□□ 0.05
VCP-207ENST00000493886 PCDHA12Q9UN75 941 aa15.36■□□□□ 0.05
VCP-207ENST00000493886 CASP14P31944 242 aa15.36■□□□□ 0.05
VCP-207ENST00000493886 PPP1R2P41236 205 aa15.36■□□□□ 0.05
VCP-207ENST00000493886 AP3B2Q13367 1082 aa15.36■□□□□ 0.05
VCP-207ENST00000493886 SF3B2Q13435 895 aaKnown RBP15.36■□□□□ 0.05
VCP-207ENST00000493886 P2RX5Q93086 422 aa15.36■□□□□ 0.05
VCP-207ENST00000493886 ARGLU1Q9NWB6 273 aaPredicted RBP15.36■□□□□ 0.05
VCP-207ENST00000493886 EEF1GP26641 437 aaKnown RBP15.35■□□□□ 0.05
VCP-207ENST00000493886 BTNL9Q6UXG8 535 aa15.35■□□□□ 0.05
VCP-207ENST00000493886 CNGA4Q8IV77 575 aa15.35■□□□□ 0.05
VCP-207ENST00000493886 NOC3LQ8WTT2 800 aaKnown RBP15.35■□□□□ 0.05
VCP-207ENST00000493886 DUSP9Q99956 384 aaKnown RBP15.35■□□□□ 0.05
VCP-207ENST00000493886 SYNPO2Q9UMS6 1093 aa15.35■□□□□ 0.05
VCP-207ENST00000493886 BICDL2A1A5D9 508 aa15.35■□□□□ 0.05
VCP-207ENST00000493886 TPM1P09493 284 aa15.35■□□□□ 0.05
VCP-207ENST00000493886 PLA2G4AP47712 749 aa15.35■□□□□ 0.05
VCP-207ENST00000493886 USH1GQ495M9 461 aa15.35■□□□□ 0.05
VCP-207ENST00000493886 SPDYE2Q495Y8 402 aa15.35■□□□□ 0.05
VCP-207ENST00000493886 RAD9BQ6WBX8 426 aa15.35■□□□□ 0.05
VCP-207ENST00000493886 UNC13DQ70J99 1090 aa15.35■□□□□ 0.05
VCP-207ENST00000493886 KCNK18Q7Z418 384 aa15.35■□□□□ 0.05
VCP-207ENST00000493886 SPICE1Q8N0Z3 855 aa15.35■□□□□ 0.05
VCP-207ENST00000493886 KIAA0895Q8NCT3 520 aa15.35■□□□□ 0.05
VCP-207ENST00000493886 NAA15Q9BXJ9 866 aaKnown RBP15.35■□□□□ 0.05
VCP-207ENST00000493886 CYP3A7-CYP3A51PA0A087WV96 503 aa15.34■□□□□ 0.05
VCP-207ENST00000493886 PVALEFA0A1B0GWK0 134 aa15.34■□□□□ 0.05
VCP-207ENST00000493886 CYP3A7P24462 503 aa15.34■□□□□ 0.05
VCP-207ENST00000493886 FXR1P51114 621 aaKnown RBP eCLIP15.34■□□□□ 0.059e-6■■■□□ 16.8
VCP-207ENST00000493886 UBXN1Q04323 297 aa15.34■□□□□ 0.05
VCP-207ENST00000493886 COBLL1Q53SF7 1204 aa15.34■□□□□ 0.05
VCP-207ENST00000493886 CSGALNACT2Q8N6G5 542 aa15.34■□□□□ 0.05
VCP-207ENST00000493886 HPS3Q969F9 1004 aa15.34■□□□□ 0.05
VCP-207ENST00000493886 ARHGEF10LQ9HCE6 1279 aa15.34■□□□□ 0.05
VCP-207ENST00000493886 FAM53CQ9NYF3 392 aa15.34■□□□□ 0.05
VCP-207ENST00000493886 MAGEC2Q9UBF1 373 aaPredicted RBP15.34■□□□□ 0.05
VCP-207ENST00000493886 CNTNAP1P78357 1384 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms