RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 RBP3P10745 1247 aa5.92□□□□□ -1.46
VPS13A-212ENST00000493341 BCRP11274 1271 aa5.92□□□□□ -1.46
VPS13A-212ENST00000493341 LPOP22079 712 aaPredicted RBP5.92□□□□□ -1.46
VPS13A-212ENST00000493341 KCNAB2Q13303 367 aa5.92□□□□□ -1.46
VPS13A-212ENST00000493341 ACAP2Q15057 778 aa5.92□□□□□ -1.46
VPS13A-212ENST00000493341 TMEM240Q5SV17 173 aa5.92□□□□□ -1.46
VPS13A-212ENST00000493341 CMTR2Q8IYT2 770 aaKnown RBP5.92□□□□□ -1.46
VPS13A-212ENST00000493341 Q96M66 194 aa5.92□□□□□ -1.46
VPS13A-212ENST00000493341 KCNJ15Q99712 375 aa5.92□□□□□ -1.46
VPS13A-212ENST00000493341 KLHL33A6NCF5 533 aa5.91□□□□□ -1.46
VPS13A-212ENST00000493341 GOLGA8AA7E2F4 631 aa5.91□□□□□ -1.46
VPS13A-212ENST00000493341 GOLGA8BA8MQT2 603 aa5.91□□□□□ -1.46
VPS13A-212ENST00000493341 H3BM21 787 aa5.91□□□□□ -1.46
VPS13A-212ENST00000493341 LCE2BO14633 110 aa5.91□□□□□ -1.46
VPS13A-212ENST00000493341 ERC2O15083 957 aa5.91□□□□□ -1.46
VPS13A-212ENST00000493341 PCDHGA12O60330 932 aa5.91□□□□□ -1.46
VPS13A-212ENST00000493341 H2AFYO75367 372 aaKnown RBP5.91□□□□□ -1.46
VPS13A-212ENST00000493341 WDHD1O75717 1129 aaPredicted RBP5.91□□□□□ -1.46
VPS13A-212ENST00000493341 HTRA3P83110 453 aa5.91□□□□□ -1.46
VPS13A-212ENST00000493341 RBM10P98175 930 aaKnown RBP5.91□□□□□ -1.46
VPS13A-212ENST00000493341 KRT76Q01546 638 aa5.91□□□□□ -1.46
VPS13A-212ENST00000493341 LRRC32Q14392 662 aa5.91□□□□□ -1.46
VPS13A-212ENST00000493341 GBX1Q14549 363 aa5.91□□□□□ -1.46
VPS13A-212ENST00000493341 GRAMD1BQ3KR37 738 aa5.91□□□□□ -1.46
VPS13A-212ENST00000493341 EFCAB2Q5VUJ9 269 aa5.91□□□□□ -1.46
VPS13A-212ENST00000493341 PODNQ7Z5L7 613 aa5.91□□□□□ -1.46
VPS13A-212ENST00000493341 MORC1Q86VD1 984 aa5.91□□□□□ -1.46
VPS13A-212ENST00000493341 SPICE1Q8N0Z3 855 aa5.91□□□□□ -1.46
VPS13A-212ENST00000493341 EFHBQ8N7U6 833 aa5.91□□□□□ -1.46
VPS13A-212ENST00000493341 PTPRHQ9HD43 1115 aa5.91□□□□□ -1.46
VPS13A-212ENST00000493341 INVSQ9Y283 1065 aa5.91□□□□□ -1.46
VPS13A-212ENST00000493341 PCDHGA9Q9Y5G4 932 aaKnown RBP5.91□□□□□ -1.46
VPS13A-212ENST00000493341 PCDHGA8Q9Y5G5 932 aa5.91□□□□□ -1.46
VPS13A-212ENST00000493341 PCDHGA7Q9Y5G6 932 aa5.91□□□□□ -1.46
VPS13A-212ENST00000493341 PCDHGA6Q9Y5G7 932 aa5.91□□□□□ -1.46
VPS13A-212ENST00000493341 PCDHGA3Q9Y5H0 932 aa5.91□□□□□ -1.46
VPS13A-212ENST00000493341 PCDHGA2Q9Y5H1 932 aa5.91□□□□□ -1.46
VPS13A-212ENST00000493341 NPHP3-ACAD11A0A0J9YXS1 232 aa5.91□□□□□ -1.46
VPS13A-212ENST00000493341 FAM47E-STBD1D6RA91 191 aa5.91□□□□□ -1.46
VPS13A-212ENST00000493341 TGM5O43548 720 aa5.91□□□□□ -1.46
VPS13A-212ENST00000493341 GLB1P16278 677 aa5.91□□□□□ -1.46
VPS13A-212ENST00000493341 RXRBP28702 533 aa5.91□□□□□ -1.46
VPS13A-212ENST00000493341 CRY1Q16526 586 aa5.91□□□□□ -1.46
VPS13A-212ENST00000493341 EEF1DP3Q658K8 133 aa5.91□□□□□ -1.46
VPS13A-212ENST00000493341 IQCEQ6IPM2 695 aa5.91□□□□□ -1.46
VPS13A-212ENST00000493341 C16orf59Q7L2K0 433 aa5.91□□□□□ -1.46
VPS13A-212ENST00000493341 TICAM2Q86XR7 235 aa5.91□□□□□ -1.46
VPS13A-212ENST00000493341 TTC17Q96AE7 1141 aa5.91□□□□□ -1.46
VPS13A-212ENST00000493341 AIFM3Q96NN9 605 aa5.91□□□□□ -1.46
VPS13A-212ENST00000493341 YIPF2Q9BWQ6 316 aa5.91□□□□□ -1.46
VPS13A-212ENST00000493341 SLC12A5Q9H2X9 1139 aa5.91□□□□□ -1.46
VPS13A-212ENST00000493341 PRDM5Q9NQX1 630 aaPredicted RBP5.91□□□□□ -1.46
VPS13A-212ENST00000493341 TOPORSQ9NS56 1045 aaPredicted RBP5.91□□□□□ -1.46
VPS13A-212ENST00000493341 GPATCH2Q9NW75 528 aa5.91□□□□□ -1.46
VPS13A-212ENST00000493341 PPARGC1AQ9UBK2 798 aaKnown RBP5.91□□□□□ -1.46
VPS13A-212ENST00000493341 PUF60Q9UHX1 559 aaKnown RBP5.91□□□□□ -1.46
VPS13A-212ENST00000493341 PNMA2Q9UL42 364 aa5.91□□□□□ -1.46
VPS13A-212ENST00000493341 CBLCQ9ULV8 474 aa5.91□□□□□ -1.46
VPS13A-212ENST00000493341 NOC2LQ9Y3T9 749 aaKnown RBP5.91□□□□□ -1.46
VPS13A-212ENST00000493341 H7C1D1 291 aa5.9□□□□□ -1.47
VPS13A-212ENST00000493341 GSTM1P09488 218 aa5.9□□□□□ -1.47
VPS13A-212ENST00000493341 SLC9A1P19634 815 aa5.9□□□□□ -1.47
VPS13A-212ENST00000493341 GRK2P25098 689 aa5.9□□□□□ -1.47
VPS13A-212ENST00000493341 GRK3P35626 688 aa5.9□□□□□ -1.47
VPS13A-212ENST00000493341 TRIM28Q13263 835 aaKnown RBP5.9□□□□□ -1.47
VPS13A-212ENST00000493341 TESK1Q15569 626 aa5.9□□□□□ -1.47
VPS13A-212ENST00000493341 INF2Q27J81 1249 aa5.9□□□□□ -1.47
VPS13A-212ENST00000493341 SFRP5Q5T4F7 317 aa5.9□□□□□ -1.47
VPS13A-212ENST00000493341 SHISA2Q6UWI4 295 aa5.9□□□□□ -1.47
VPS13A-212ENST00000493341 NPAS3Q8IXF0 933 aa5.9□□□□□ -1.47
VPS13A-212ENST00000493341 VPS37AQ8NEZ2 397 aa5.9□□□□□ -1.47
VPS13A-212ENST00000493341 SCYL1Q96KG9 808 aa5.9□□□□□ -1.47
VPS13A-212ENST00000493341 PLVAPQ9BX97 442 aa5.9□□□□□ -1.47
VPS13A-212ENST00000493341 SLC12A9Q9BXP2 914 aa5.9□□□□□ -1.47
VPS13A-212ENST00000493341 HDAC8Q9BY41 377 aa5.9□□□□□ -1.47
VPS13A-212ENST00000493341 GNL3LQ9NVN8 582 aaKnown RBP5.9□□□□□ -1.47
VPS13A-212ENST00000493341 RASSF10A6NK89 507 aa5.89□□□□□ -1.47
VPS13A-212ENST00000493341 HMGB1P1B2RPK0 211 aaPredicted RBP5.89□□□□□ -1.47
VPS13A-212ENST00000493341 F8W735 103 aaPredicted RBP5.89□□□□□ -1.47
VPS13A-212ENST00000493341 NPHP1O15259 732 aa5.89□□□□□ -1.47
VPS13A-212ENST00000493341 AP1G1O43747 822 aa5.89□□□□□ -1.47
VPS13A-212ENST00000493341 NRDCO43847 1150 aa5.89□□□□□ -1.47
VPS13A-212ENST00000493341 VAV1P15498 845 aa5.89□□□□□ -1.47
VPS13A-212ENST00000493341 PHKG2P15735 406 aa5.89□□□□□ -1.47
VPS13A-212ENST00000493341 PDE6AP16499 860 aa5.89□□□□□ -1.47
VPS13A-212ENST00000493341 YBX3P16989 372 aaKnown RBP eCLIP5.89□□□□□ -1.47
VPS13A-212ENST00000493341 KRT15P19012 456 aa5.89□□□□□ -1.47
VPS13A-212ENST00000493341 PAMP19021 973 aa5.89□□□□□ -1.47
VPS13A-212ENST00000493341 ARHGAP44Q17R89 818 aa5.89□□□□□ -1.47
VPS13A-212ENST00000493341 SGO2Q562F6 1265 aa5.89□□□□□ -1.47
VPS13A-212ENST00000493341 ZFYVE27Q5T4F4 411 aa5.89□□□□□ -1.47
VPS13A-212ENST00000493341 IFIT1BQ5T764 474 aaKnown RBP5.89□□□□□ -1.47
VPS13A-212ENST00000493341 CREB3L3Q68CJ9 461 aa5.89□□□□□ -1.47
VPS13A-212ENST00000493341 ZNF655Q8N720 491 aaPredicted RBP5.89□□□□□ -1.47
VPS13A-212ENST00000493341 PARD3BQ8TEW8 1205 aa5.89□□□□□ -1.47
VPS13A-212ENST00000493341 TRIM11Q96F44 468 aa5.89□□□□□ -1.47
VPS13A-212ENST00000493341 COX4I2Q96KJ9 171 aa5.89□□□□□ -1.47
VPS13A-212ENST00000493341 NUP88Q99567 741 aaPredicted RBP5.89□□□□□ -1.47
VPS13A-212ENST00000493341 ELAC2Q9BQ52 826 aaKnown RBP5.89□□□□□ -1.47
VPS13A-212ENST00000493341 DUSP23Q9BVJ7 150 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms