RNA–Protein interactions for RNA: ENST00000491319.2

SMPD4-220, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 593 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-220ENST00000491319 SGSM2O43147 1006 aa18.27■□□□□ 0.52
SMPD4-220ENST00000491319 GHRHRQ02643 423 aa18.27■□□□□ 0.52
SMPD4-220ENST00000491319 PRDM12Q9H4Q4 367 aa18.27■□□□□ 0.52
SMPD4-220ENST00000491319 MSRAQ9UJ68 235 aa18.27■□□□□ 0.52
SMPD4-220ENST00000491319 PCDHA1Q9Y5I3 950 aa18.27■□□□□ 0.52
SMPD4-220ENST00000491319 CHD7Q9P2D1 2997 aa18.26■□□□□ 0.51
SMPD4-220ENST00000491319 ZBBXA8MT70 800 aa18.26■□□□□ 0.51
SMPD4-220ENST00000491319 E7EWF7 191 aa18.26■□□□□ 0.51
SMPD4-220ENST00000491319 NR3C2P08235 984 aa18.26■□□□□ 0.51
SMPD4-220ENST00000491319 HOXA13P31271 388 aaPredicted RBP18.26■□□□□ 0.51
SMPD4-220ENST00000491319 RABGGTBP53611 331 aa18.26■□□□□ 0.51
SMPD4-220ENST00000491319 PTPN11Q06124 597 aaPredicted RBP18.26■□□□□ 0.51
SMPD4-220ENST00000491319 RALYLQ86SE5 291 aaKnown RBP18.26■□□□□ 0.51
SMPD4-220ENST00000491319 NCOA7Q8NI08 942 aa18.26■□□□□ 0.51
SMPD4-220ENST00000491319 PIGSQ96S52 555 aa18.26■□□□□ 0.51
SMPD4-220ENST00000491319 DDX41Q9UJV9 622 aaKnown RBP18.26■□□□□ 0.51
SMPD4-220ENST00000491319 SLC4A7Q9Y6M7 1214 aa18.26■□□□□ 0.51
SMPD4-220ENST00000491319 ERICH2A1L162 156 aa18.25■□□□□ 0.51
SMPD4-220ENST00000491319 PITPNM1O00562 1244 aa18.25■□□□□ 0.51
SMPD4-220ENST00000491319 EIF3JO75822 258 aaKnown RBP18.25■□□□□ 0.51
SMPD4-220ENST00000491319 PFKMP08237 780 aa18.25■□□□□ 0.51
SMPD4-220ENST00000491319 ANTXR2P58335 489 aa18.25■□□□□ 0.51
SMPD4-220ENST00000491319 WTAPQ15007 396 aa18.25■□□□□ 0.51
SMPD4-220ENST00000491319 IL31RAQ8NI17 732 aa18.25■□□□□ 0.51
SMPD4-220ENST00000491319 KAT2BQ92831 832 aa18.25■□□□□ 0.51
SMPD4-220ENST00000491319 GAS2L1Q99501 681 aaPredicted RBP18.25■□□□□ 0.51
SMPD4-220ENST00000491319 PDCD2LQ9BRP1 358 aa18.25■□□□□ 0.51
SMPD4-220ENST00000491319 RIOX1Q9H6W3 641 aa18.25■□□□□ 0.51
SMPD4-220ENST00000491319 NOD1Q9Y239 953 aa18.25■□□□□ 0.51
SMPD4-220ENST00000491319 MRVI1Q9Y6F6 885 aa18.25■□□□□ 0.51
SMPD4-220ENST00000491319 CYTH3O43739 400 aa18.24■□□□□ 0.51
SMPD4-220ENST00000491319 IQCF3P0C7M6 154 aa18.24■□□□□ 0.51
SMPD4-220ENST00000491319 MYCLP12524 364 aaPredicted RBP18.24■□□□□ 0.51
SMPD4-220ENST00000491319 MYOGP15173 224 aa18.24■□□□□ 0.51
SMPD4-220ENST00000491319 TROAPQ12815 778 aa18.24■□□□□ 0.51
SMPD4-220ENST00000491319 PTGISQ16647 500 aa18.24■□□□□ 0.51
SMPD4-220ENST00000491319 GDF6Q6KF10 455 aaPredicted RBP18.24■□□□□ 0.51
SMPD4-220ENST00000491319 CTAGE1Q96RT6 745 aa18.24■□□□□ 0.51
SMPD4-220ENST00000491319 COL4A4P53420 1690 aaPredicted RBP18.23■□□□□ 0.51
SMPD4-220ENST00000491319 RGS20O76081 388 aa18.23■□□□□ 0.51
SMPD4-220ENST00000491319 ZNF286BP0CG31 522 aa18.23■□□□□ 0.51
SMPD4-220ENST00000491319 ATP2A2P16615 1042 aaKnown RBP18.23■□□□□ 0.51
SMPD4-220ENST00000491319 CASTP20810 708 aaKnown RBP18.23■□□□□ 0.51
SMPD4-220ENST00000491319 BFSP2Q13515 415 aa18.23■□□□□ 0.51
SMPD4-220ENST00000491319 SART3Q15020 963 aaKnown RBP18.23■□□□□ 0.51
SMPD4-220ENST00000491319 PGM5Q15124 567 aa18.23■□□□□ 0.51
SMPD4-220ENST00000491319 DGKDQ16760 1214 aa18.23■□□□□ 0.51
SMPD4-220ENST00000491319 TMEM67Q5HYA8 995 aa18.23■□□□□ 0.51
SMPD4-220ENST00000491319 SESTD1Q86VW0 696 aa18.23■□□□□ 0.51
SMPD4-220ENST00000491319 MB21D2Q8IYB1 491 aaPredicted RBP18.23■□□□□ 0.51
SMPD4-220ENST00000491319 RETREG2Q8NC44 543 aa18.23■□□□□ 0.51
SMPD4-220ENST00000491319 EMID1Q96A84 441 aaPredicted RBP18.23■□□□□ 0.51
SMPD4-220ENST00000491319 SLC28A3Q9HAS3 691 aa18.23■□□□□ 0.51
SMPD4-220ENST00000491319 RBM8AQ9Y5S9 174 aaKnown RBP18.23■□□□□ 0.51
SMPD4-220ENST00000491319 MICAL3Q7RTP6 2002 aa18.22■□□□□ 0.51
SMPD4-220ENST00000491319 KAT6AQ92794 2004 aa18.22■□□□□ 0.51
SMPD4-220ENST00000491319 SORBS3O60504 671 aa18.22■□□□□ 0.51
SMPD4-220ENST00000491319 RFC2P35250 354 aa18.22■□□□□ 0.51
SMPD4-220ENST00000491319 ADGRE1Q14246 886 aa18.22■□□□□ 0.51
SMPD4-220ENST00000491319 PPP2R2DQ66LE6 453 aa18.22■□□□□ 0.51
SMPD4-220ENST00000491319 MAP4K1Q92918 833 aa18.22■□□□□ 0.51
SMPD4-220ENST00000491319 ZFP91Q96JP5 570 aaPredicted RBP18.22■□□□□ 0.51
SMPD4-220ENST00000491319 MAP3K20Q9NYL2 800 aaKnown RBP18.22■□□□□ 0.51
SMPD4-220ENST00000491319 ACTN1P12814 892 aa18.21■□□□□ 0.51
SMPD4-220ENST00000491319 PSEN2P49810 448 aa18.21■□□□□ 0.51
SMPD4-220ENST00000491319 LAMC2Q13753 1193 aa18.21■□□□□ 0.51
SMPD4-220ENST00000491319 CATIPQ7Z7H3 387 aa18.21■□□□□ 0.51
SMPD4-220ENST00000491319 FCHSD1Q86WN1 690 aa18.21■□□□□ 0.51
SMPD4-220ENST00000491319 DHX37Q8IY37 1157 aaKnown RBP18.21■□□□□ 0.51
SMPD4-220ENST00000491319 SAMD3Q8N6K7 520 aa18.21■□□□□ 0.51
SMPD4-220ENST00000491319 PPTC7Q8NI37 304 aa18.21■□□□□ 0.51
SMPD4-220ENST00000491319 IGDCC4Q8TDY8 1250 aa18.21■□□□□ 0.51
SMPD4-220ENST00000491319 PIBF1Q8WXW3 757 aa18.21■□□□□ 0.51
SMPD4-220ENST00000491319 PPM1EQ8WY54 764 aa18.21■□□□□ 0.51
SMPD4-220ENST00000491319 DHX38Q92620 1227 aaKnown RBP18.21■□□□□ 0.51
SMPD4-220ENST00000491319 ALG1Q9BT22 464 aa18.21■□□□□ 0.51
SMPD4-220ENST00000491319 MYL10Q9BUA6 226 aa18.21■□□□□ 0.51
SMPD4-220ENST00000491319 PRDM6Q9NQX0 595 aa18.21■□□□□ 0.51
SMPD4-220ENST00000491319 GTF2IRD1Q9UHL9 959 aa18.21■□□□□ 0.51
SMPD4-220ENST00000491319 PCDHA11Q9Y5I1 949 aa18.21■□□□□ 0.51
SMPD4-220ENST00000491319 PNMA6FA0A0J9YX94 578 aa18.2■□□□□ 0.5
SMPD4-220ENST00000491319 GCOM1H8Y6P7 765 aaPredicted RBP18.2■□□□□ 0.5
SMPD4-220ENST00000491319 F2P00734 622 aa18.2■□□□□ 0.5
SMPD4-220ENST00000491319 POLR2MP0CAP2 368 aa18.2■□□□□ 0.5
SMPD4-220ENST00000491319 UBA1P22314 1058 aaKnown RBP18.2■□□□□ 0.5
SMPD4-220ENST00000491319 MFSD10Q14728 455 aa18.2■□□□□ 0.5
SMPD4-220ENST00000491319 VSIG10LQ86VR7 867 aa18.2■□□□□ 0.5
SMPD4-220ENST00000491319 CCDC155Q8N6L0 562 aa18.2■□□□□ 0.5
SMPD4-220ENST00000491319 CAGE1Q8TC20 777 aa18.2■□□□□ 0.5
SMPD4-220ENST00000491319 GPKOWQ92917 476 aaPredicted RBP eCLIP18.2■□□□□ 0.5
SMPD4-220ENST00000491319 KATNAL1Q9BW62 490 aa18.2■□□□□ 0.5
SMPD4-220ENST00000491319 FTOQ9C0B1 505 aaKnown RBP eCLIP18.2■□□□□ 0.5
SMPD4-220ENST00000491319 HDAC6Q9UBN7 1215 aa18.2■□□□□ 0.5
SMPD4-220ENST00000491319 PRRC2BQ5JSZ5 2229 aaKnown RBP18.2■□□□□ 0.5
SMPD4-220ENST00000491319 RBAK-RBAKDNI3L0D1 243 aa18.19■□□□□ 0.5
SMPD4-220ENST00000491319 HAS3O00219 553 aa18.19■□□□□ 0.5
SMPD4-220ENST00000491319 GGPS1O95749 300 aa18.19■□□□□ 0.5
SMPD4-220ENST00000491319 HOXD8P13378 290 aaPredicted RBP18.19■□□□□ 0.5
SMPD4-220ENST00000491319 IGFBP4P22692 258 aa18.19■□□□□ 0.5
SMPD4-220ENST00000491319 CCND2P30279 289 aa18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms