RNA–Protein interactions for RNA: ENST00000491183.5

HMGN1-219, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 527 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-219ENST00000491183 SPZ1Q9BXG8 430 aa20.85■□□□□ 0.93
HMGN1-219ENST00000491183 WNT8AQ9H1J5 351 aa20.85■□□□□ 0.93
HMGN1-219ENST00000491183 SEMA6BQ9H3T3 888 aa20.85■□□□□ 0.93
HMGN1-219ENST00000491183 IL23AQ9NPF7 189 aa20.85■□□□□ 0.93
HMGN1-219ENST00000491183 COL6A3P12111 3177 aa20.84■□□□□ 0.93
HMGN1-219ENST00000491183 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.84■□□□□ 0.93
HMGN1-219ENST00000491183 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.84■□□□□ 0.93
HMGN1-219ENST00000491183 PLEKHA8P1O95397 391 aa20.84■□□□□ 0.93
HMGN1-219ENST00000491183 MMP3P08254 477 aa20.84■□□□□ 0.93
HMGN1-219ENST00000491183 CYP2C9P11712 490 aa20.84■□□□□ 0.93
HMGN1-219ENST00000491183 SMARCA1P28370 1054 aa20.84■□□□□ 0.93
HMGN1-219ENST00000491183 LIFRP42702 1097 aa20.84■□□□□ 0.93
HMGN1-219ENST00000491183 PGM5Q15124 567 aa20.84■□□□□ 0.93
HMGN1-219ENST00000491183 NFXL1Q6ZNB6 911 aa20.84■□□□□ 0.93
HMGN1-219ENST00000491183 FCHSD1Q86WN1 690 aa20.84■□□□□ 0.93
HMGN1-219ENST00000491183 SRBD1Q8N5C6 995 aaKnown RBP20.84■□□□□ 0.93
HMGN1-219ENST00000491183 ZFP91Q96JP5 570 aaPredicted RBP20.84■□□□□ 0.93
HMGN1-219ENST00000491183 LRRC2Q9BYS8 371 aa20.84■□□□□ 0.93
HMGN1-219ENST00000491183 TTYH1Q9H313 450 aaPredicted RBP20.84■□□□□ 0.93
HMGN1-219ENST00000491183 CCDC69A6NI79 296 aa20.83■□□□□ 0.93
HMGN1-219ENST00000491183 SUPT20HL2P0C7V6 817 aa20.83■□□□□ 0.93
HMGN1-219ENST00000491183 RXRAP19793 462 aa20.83■□□□□ 0.93
HMGN1-219ENST00000491183 KIF5BP33176 963 aa20.83■□□□□ 0.93
HMGN1-219ENST00000491183 FAM47CQ5HY64 1035 aa20.83■□□□□ 0.93
HMGN1-219ENST00000491183 NFRKBQ6P4R8 1299 aa20.83■□□□□ 0.93
HMGN1-219ENST00000491183 VWCEQ96DN2 955 aa20.83■□□□□ 0.93
HMGN1-219ENST00000491183 MRVI1Q9Y6F6 885 aa20.83■□□□□ 0.93
HMGN1-219ENST00000491183 RAB11FIP4Q86YS3 637 aa20.82■□□□□ 0.92
HMGN1-219ENST00000491183 CMTR1Q8N1G2 835 aaKnown RBP20.82■□□□□ 0.92
HMGN1-219ENST00000491183 KAT2BQ92831 832 aa20.82■□□□□ 0.92
HMGN1-219ENST00000491183 EMID1Q96A84 441 aaPredicted RBP20.82■□□□□ 0.92
HMGN1-219ENST00000491183 RRP36Q96EU6 259 aaKnown RBP20.82■□□□□ 0.92
HMGN1-219ENST00000491183 LZTS2Q9BRK4 669 aa20.82■□□□□ 0.92
HMGN1-219ENST00000491183 CDC45O75419 566 aa20.81■□□□□ 0.92
HMGN1-219ENST00000491183 CASTP20810 708 aaKnown RBP20.81■□□□□ 0.92
HMGN1-219ENST00000491183 GNAQP50148 359 aa20.81■□□□□ 0.92
HMGN1-219ENST00000491183 SP2Q02086 613 aa20.81■□□□□ 0.92
HMGN1-219ENST00000491183 PTPN11Q06124 597 aaPredicted RBP20.81■□□□□ 0.92
HMGN1-219ENST00000491183 PSRC1Q6PGN9 363 aaPredicted RBP20.81■□□□□ 0.92
HMGN1-219ENST00000491183 DHX37Q8IY37 1157 aaKnown RBP20.81■□□□□ 0.92
HMGN1-219ENST00000491183 RASEFQ8IZ41 740 aa20.81■□□□□ 0.92
HMGN1-219ENST00000491183 HERVK_113Q902F9 699 aa20.81■□□□□ 0.92
HMGN1-219ENST00000491183 SCLYQ96I15 445 aa20.81■□□□□ 0.92
HMGN1-219ENST00000491183 NEK1Q96PY6 1258 aa20.81■□□□□ 0.92
HMGN1-219ENST00000491183 GRXCR1A8MXD5 290 aa20.8■□□□□ 0.92
HMGN1-219ENST00000491183 FGBP02675 491 aa20.8■□□□□ 0.92
HMGN1-219ENST00000491183 CCND2P30279 289 aa20.8■□□□□ 0.92
HMGN1-219ENST00000491183 CHMP4BP1P59074 171 aa20.8■□□□□ 0.92
HMGN1-219ENST00000491183 EXOSC10Q01780 885 aaKnown RBP20.8■□□□□ 0.92
HMGN1-219ENST00000491183 LAMC2Q13753 1193 aa20.8■□□□□ 0.92
HMGN1-219ENST00000491183 RNF20Q5VTR2 975 aa20.8■□□□□ 0.92
HMGN1-219ENST00000491183 SGMS1Q86VZ5 419 aa20.8■□□□□ 0.92
HMGN1-219ENST00000491183 GPKOWQ92917 476 aaPredicted RBP eCLIP20.8■□□□□ 0.92
HMGN1-219ENST00000491183 CDX2Q99626 313 aaPredicted RBP20.8■□□□□ 0.92
HMGN1-219ENST00000491183 CXXC1Q9P0U4 656 aaPredicted RBP20.8■□□□□ 0.92
HMGN1-219ENST00000491183 SLC12A7Q9Y666 1083 aa20.8■□□□□ 0.92
HMGN1-219ENST00000491183 FRMPD4Q14CM0 1322 aa20.79■□□□□ 0.92
HMGN1-219ENST00000491183 CALM1P0DP23 149 aa20.79■□□□□ 0.92
HMGN1-219ENST00000491183 CALM2P0DP24 149 aa20.79■□□□□ 0.92
HMGN1-219ENST00000491183 CALM3P0DP25 149 aa20.79■□□□□ 0.92
HMGN1-219ENST00000491183 MRPS9P82933 396 aaKnown RBP20.79■□□□□ 0.92
HMGN1-219ENST00000491183 DGKDQ16760 1214 aa20.79■□□□□ 0.92
HMGN1-219ENST00000491183 ADCK5Q3MIX3 580 aa20.79■□□□□ 0.92
HMGN1-219ENST00000491183 TSGA10IPQ3SY00 556 aa20.79■□□□□ 0.92
HMGN1-219ENST00000491183 CELF3Q5SZQ8 465 aaKnown RBP20.79■□□□□ 0.92
HMGN1-219ENST00000491183 MYSM1Q5VVJ2 828 aa20.79■□□□□ 0.92
HMGN1-219ENST00000491183 KCNV1Q6PIU1 500 aa20.79■□□□□ 0.92
HMGN1-219ENST00000491183 USP17L6PQ6QN14 398 aa20.79■□□□□ 0.92
HMGN1-219ENST00000491183 FANCBQ8NB91 859 aa20.79■□□□□ 0.92
HMGN1-219ENST00000491183 PPTC7Q8NI37 304 aa20.79■□□□□ 0.92
HMGN1-219ENST00000491183 CCDC136Q96JN2 1154 aa20.79■□□□□ 0.92
HMGN1-219ENST00000491183 CTAGE1Q96RT6 745 aa20.79■□□□□ 0.92
HMGN1-219ENST00000491183 SCN5AQ14524 2016 aa20.78■□□□□ 0.92
HMGN1-219ENST00000491183 MEIS2O14770 477 aa20.78■□□□□ 0.92
HMGN1-219ENST00000491183 SORBS3O60504 671 aa20.78■□□□□ 0.92
HMGN1-219ENST00000491183 DNAJB2P25686 324 aa20.78■□□□□ 0.92
HMGN1-219ENST00000491183 GDF6Q6KF10 455 aaPredicted RBP20.78■□□□□ 0.92
HMGN1-219ENST00000491183 OTOP2Q7RTS6 562 aa20.78■□□□□ 0.92
HMGN1-219ENST00000491183 SESTD1Q86VW0 696 aa20.78■□□□□ 0.92
HMGN1-219ENST00000491183 RPUSD2Q8IZ73 545 aaKnown RBP20.78■□□□□ 0.92
HMGN1-219ENST00000491183 CCDC82Q8N4S0 544 aa20.78■□□□□ 0.92
HMGN1-219ENST00000491183 SLC17A8Q8NDX2 589 aa20.78■□□□□ 0.92
HMGN1-219ENST00000491183 TCEANC2Q96MN5 208 aa20.78■□□□□ 0.92
HMGN1-219ENST00000491183 BCAS3Q9H6U6 928 aa20.78■□□□□ 0.92
HMGN1-219ENST00000491183 SEC63Q9UGP8 760 aaKnown RBP20.78■□□□□ 0.92
HMGN1-219ENST00000491183 hCG_1642624A0A1W2PR95 340 aa20.77■□□□□ 0.92
HMGN1-219ENST00000491183 GGPS1O95749 300 aa20.77■□□□□ 0.92
HMGN1-219ENST00000491183 TGFB3P10600 412 aa20.77■□□□□ 0.92
HMGN1-219ENST00000491183 HOXD8P13378 290 aaPredicted RBP20.77■□□□□ 0.92
HMGN1-219ENST00000491183 PBX2P40425 430 aa20.77■□□□□ 0.92
HMGN1-219ENST00000491183 HSDL1Q3SXM5 330 aa20.77■□□□□ 0.92
HMGN1-219ENST00000491183 TMTC3Q6ZXV5 915 aa20.77■□□□□ 0.92
HMGN1-219ENST00000491183 DHX32Q7L7V1 743 aaKnown RBP20.77■□□□□ 0.92
HMGN1-219ENST00000491183 TRIP12Q14669 1992 aaPredicted RBP20.76■□□□□ 0.91
HMGN1-219ENST00000491183 TMEM265A0A087WTH1 108 aa20.76■□□□□ 0.91
HMGN1-219ENST00000491183 HAS3O00219 553 aa20.76■□□□□ 0.91
HMGN1-219ENST00000491183 PIK3CDO00329 1044 aa20.76■□□□□ 0.91
HMGN1-219ENST00000491183 PPFIA4O75335 1185 aa20.76■□□□□ 0.91
HMGN1-219ENST00000491183 UBA1P22314 1058 aaKnown RBP20.76■□□□□ 0.91
HMGN1-219ENST00000491183 PSEN2P49810 448 aa20.76■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms