RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 EPB41L2O43491 1005 aaKnown RBP20.91■□□□□ 0.94
COL9A3-214ENST00000490398 SORBS3O60504 671 aa20.91■□□□□ 0.94
COL9A3-214ENST00000490398 MYL3P08590 195 aa20.91■□□□□ 0.94
COL9A3-214ENST00000490398 CLTBP09497 229 aa20.91■□□□□ 0.94
COL9A3-214ENST00000490398 BMP8BP34820 402 aa20.91■□□□□ 0.94
COL9A3-214ENST00000490398 MRPS9P82933 396 aaKnown RBP20.91■□□□□ 0.94
COL9A3-214ENST00000490398 FGD1P98174 961 aa20.91■□□□□ 0.94
COL9A3-214ENST00000490398 TOB2Q14106 344 aaPredicted RBP20.91■□□□□ 0.94
COL9A3-214ENST00000490398 FRMPD4Q14CM0 1322 aa20.91■□□□□ 0.94
COL9A3-214ENST00000490398 UBE2SQ16763 222 aa20.91■□□□□ 0.94
COL9A3-214ENST00000490398 HEATR3Q7Z4Q2 680 aa20.91■□□□□ 0.94
COL9A3-214ENST00000490398 SAMD3Q8N6K7 520 aa20.91■□□□□ 0.94
COL9A3-214ENST00000490398 SLC43A3Q8NBI5 491 aa20.91■□□□□ 0.94
COL9A3-214ENST00000490398 BADQ92934 168 aa20.91■□□□□ 0.94
COL9A3-214ENST00000490398 LARP6Q9BRS8 491 aaKnown RBP20.91■□□□□ 0.94
COL9A3-214ENST00000490398 UPF3BQ9BZI7 483 aaKnown RBP20.91■□□□□ 0.94
COL9A3-214ENST00000490398 BCAS3Q9H6U6 928 aa20.91■□□□□ 0.94
COL9A3-214ENST00000490398 V9GY48 417 aaPredicted RBP20.91■□□□□ 0.94
COL9A3-214ENST00000490398 NKRFO15226 690 aaKnown RBP eCLIP20.9■□□□□ 0.94
COL9A3-214ENST00000490398 PPFIA3O75145 1194 aa20.9■□□□□ 0.94
COL9A3-214ENST00000490398 SEC24BO95487 1268 aa20.9■□□□□ 0.94
COL9A3-214ENST00000490398 PURAQ00577 322 aaKnown RBP20.9■□□□□ 0.94
COL9A3-214ENST00000490398 RUFY3Q7L099 469 aa20.9■□□□□ 0.94
COL9A3-214ENST00000490398 FBXL16Q8N461 479 aa20.9■□□□□ 0.94
COL9A3-214ENST00000490398 AFG1LQ8WV93 481 aa20.9■□□□□ 0.94
COL9A3-214ENST00000490398 UBE2OQ9C0C9 1292 aaKnown RBP20.9■□□□□ 0.94
COL9A3-214ENST00000490398 A6NJR5 290 aa20.89■□□□□ 0.93
COL9A3-214ENST00000490398 PIK3CDO00329 1044 aa20.89■□□□□ 0.93
COL9A3-214ENST00000490398 SOX1O00570 391 aaPredicted RBP20.89■□□□□ 0.93
COL9A3-214ENST00000490398 KIAA0355O15063 1070 aa20.89■□□□□ 0.93
COL9A3-214ENST00000490398 PSMA5P28066 241 aa20.89■□□□□ 0.93
COL9A3-214ENST00000490398 METAP2P50579 478 aaKnown RBP eCLIP20.89■□□□□ 0.93
COL9A3-214ENST00000490398 SP2Q02086 613 aa20.89■□□□□ 0.93
COL9A3-214ENST00000490398 ITGA7Q13683 1181 aa20.89■□□□□ 0.93
COL9A3-214ENST00000490398 FAM126BQ8IXS8 530 aa20.89■□□□□ 0.93
COL9A3-214ENST00000490398 SMARCC2Q8TAQ2 1214 aa20.89■□□□□ 0.93
COL9A3-214ENST00000490398 TOX2Q96NM4 488 aa20.89■□□□□ 0.93
COL9A3-214ENST00000490398 TMEM39AQ9NV64 488 aa20.89■□□□□ 0.93
COL9A3-214ENST00000490398 PRKAG2Q9UGJ0 569 aa20.89■□□□□ 0.93
COL9A3-214ENST00000490398 TBX21Q9UL17 535 aa20.89■□□□□ 0.93
COL9A3-214ENST00000490398 MRVI1Q9Y6F6 885 aa20.89■□□□□ 0.93
COL9A3-214ENST00000490398 LTBP2Q14767 1821 aa20.89■□□□□ 0.93
COL9A3-214ENST00000490398 ADAMTS3O15072 1205 aa20.88■□□□□ 0.93
COL9A3-214ENST00000490398 ZEB2O60315 1214 aa20.88■□□□□ 0.93
COL9A3-214ENST00000490398 CCND2P30279 289 aa20.88■□□□□ 0.93
COL9A3-214ENST00000490398 CPT1AP50416 773 aa20.88■□□□□ 0.93
COL9A3-214ENST00000490398 EPHB4P54760 987 aa20.88■□□□□ 0.93
COL9A3-214ENST00000490398 SEMA3FQ13275 785 aa20.88■□□□□ 0.93
COL9A3-214ENST00000490398 TRPV6Q9H1D0 765 aa20.88■□□□□ 0.93
COL9A3-214ENST00000490398 PSTPIP2Q9H939 334 aa20.88■□□□□ 0.93
COL9A3-214ENST00000490398 RTEL1Q9NZ71 1219 aa20.88■□□□□ 0.93
COL9A3-214ENST00000490398 NID2Q14112 1375 aa20.87■□□□□ 0.93
COL9A3-214ENST00000490398 DCDC2CA8MYV0 355 aa20.87■□□□□ 0.93
COL9A3-214ENST00000490398 STXBP3O00186 592 aa20.87■□□□□ 0.93
COL9A3-214ENST00000490398 CABYRO75952 493 aa20.87■□□□□ 0.93
COL9A3-214ENST00000490398 GH1P01241 217 aa20.87■□□□□ 0.93
COL9A3-214ENST00000490398 CD4P01730 458 aa20.87■□□□□ 0.93
COL9A3-214ENST00000490398 PDIA3P30101 505 aaKnown RBP20.87■□□□□ 0.93
COL9A3-214ENST00000490398 RCAN1P53805 252 aa20.87■□□□□ 0.93
COL9A3-214ENST00000490398 LBHD1Q9BQE6 289 aaPredicted RBP20.87■□□□□ 0.93
COL9A3-214ENST00000490398 MTG1Q9BT17 334 aaPredicted RBP20.87■□□□□ 0.93
COL9A3-214ENST00000490398 TM6SF1Q9BZW5 370 aa20.87■□□□□ 0.93
COL9A3-214ENST00000490398 NCOA5Q9HCD5 579 aaKnown RBP20.87■□□□□ 0.93
COL9A3-214ENST00000490398 POLR3EQ9NVU0 708 aa20.87■□□□□ 0.93
COL9A3-214ENST00000490398 TELO2Q9Y4R8 837 aa20.87■□□□□ 0.93
COL9A3-214ENST00000490398 MMP3P08254 477 aa20.86■□□□□ 0.93
COL9A3-214ENST00000490398 EVCP57679 992 aa20.86■□□□□ 0.93
COL9A3-214ENST00000490398 CCT2P78371 535 aaKnown RBP20.86■□□□□ 0.93
COL9A3-214ENST00000490398 NTRK3Q16288 839 aa20.86■□□□□ 0.93
COL9A3-214ENST00000490398 CUL5Q93034 780 aa20.86■□□□□ 0.93
COL9A3-214ENST00000490398 PHKBQ93100 1093 aa20.86■□□□□ 0.93
COL9A3-214ENST00000490398 CYP46A1Q9Y6A2 500 aa20.86■□□□□ 0.93
COL9A3-214ENST00000490398 KIAA1217Q5T5P2 1943 aa20.85■□□□□ 0.93
COL9A3-214ENST00000490398 B4GALT4O60513 344 aa20.85■□□□□ 0.93
COL9A3-214ENST00000490398 UBA1P22314 1058 aaKnown RBP20.85■□□□□ 0.93
COL9A3-214ENST00000490398 NAPAP54920 295 aa20.85■□□□□ 0.93
COL9A3-214ENST00000490398 NBPF20Q3BBV1 942 aa20.85■□□□□ 0.93
COL9A3-214ENST00000490398 C9orf50Q5SZB4 431 aa20.85■□□□□ 0.93
COL9A3-214ENST00000490398 TDHQ8IZJ6 230 aa20.85■□□□□ 0.93
COL9A3-214ENST00000490398 KAT2BQ92831 832 aa20.85■□□□□ 0.93
COL9A3-214ENST00000490398 LRCH3Q96II8 777 aa20.85■□□□□ 0.93
COL9A3-214ENST00000490398 PGBD1Q96JS3 809 aa20.85■□□□□ 0.93
COL9A3-214ENST00000490398 INPP4AQ96PE3 977 aaPredicted RBP20.85■□□□□ 0.93
COL9A3-214ENST00000490398 UMODL1Q5DID0 1318 aa20.84■□□□□ 0.93
COL9A3-214ENST00000490398 A0A1W2PPC1 479 aa20.84■□□□□ 0.93
COL9A3-214ENST00000490398 RBAK-RBAKDNI3L0D1 243 aa20.84■□□□□ 0.93
COL9A3-214ENST00000490398 GGPS1O95749 300 aa20.84■□□□□ 0.93
COL9A3-214ENST00000490398 RAG1P15918 1043 aa20.84■□□□□ 0.93
COL9A3-214ENST00000490398 PKN1Q16512 942 aa20.84■□□□□ 0.93
COL9A3-214ENST00000490398 MYSM1Q5VVJ2 828 aa20.84■□□□□ 0.93
COL9A3-214ENST00000490398 EMID1Q96A84 441 aaPredicted RBP20.84■□□□□ 0.93
COL9A3-214ENST00000490398 PPP1R12CQ9BZL4 782 aa20.84■□□□□ 0.93
COL9A3-214ENST00000490398 TRMT13Q9NUP7 481 aaKnown RBP20.84■□□□□ 0.93
COL9A3-214ENST00000490398 TMEM260Q9NX78 707 aa20.84■□□□□ 0.93
COL9A3-214ENST00000490398 BARHL2Q9NY43 387 aa20.84■□□□□ 0.93
COL9A3-214ENST00000490398 PCDHA6Q9UN73 950 aa20.84■□□□□ 0.93
COL9A3-214ENST00000490398 PCDHA8Q9Y5H6 950 aa20.84■□□□□ 0.93
COL9A3-214ENST00000490398 MROH7Q68CQ1 1323 aa20.83■□□□□ 0.93
COL9A3-214ENST00000490398 DTNBO60941 627 aa20.83■□□□□ 0.93
COL9A3-214ENST00000490398 SLC34A2O95436 690 aa20.83■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms