RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 INTS9Q9NV88 658 aaKnown RBP7.85□□□□□ -1.15
SYNE1-228ENST00000490135 EPS15L1Q9UBC2 864 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 ATP8A1Q9Y2Q0 1164 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 ENC1O14682 589 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 SART1O43290 800 aaKnown RBP7.85□□□□□ -1.15
SYNE1-228ENST00000490135 STAM2O75886 525 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 DDHD2O94830 711 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 SAT1P21673 171 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 EIF2B2P49770 351 aaKnown RBP7.85□□□□□ -1.15
SYNE1-228ENST00000490135 HADHQ16836 314 aaKnown RBP7.85□□□□□ -1.15
SYNE1-228ENST00000490135 MCMDC2Q4G0Z9 681 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 ZC3H12AQ5D1E8 599 aaKnown RBP7.85□□□□□ -1.15
SYNE1-228ENST00000490135 FAM47CQ5HY64 1035 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 FAM47EQ6ZV65 393 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 ENAHQ8N8S7 591 aaPredicted RBP7.85□□□□□ -1.15
SYNE1-228ENST00000490135 GRK7Q8WTQ7 553 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 RIN2Q8WYP3 895 aaPredicted RBP7.85□□□□□ -1.15
SYNE1-228ENST00000490135 CCDC51Q96ER9 411 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 LRRC2Q9BYS8 371 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 GLT8D2Q9H1C3 349 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 TBC1D23Q9NUY8 699 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 GALNT8Q9NY28 637 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 TSKSQ9UJT2 592 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 HNRNPRO43390 633 aaKnown RBP7.85□□□□□ -1.15
SYNE1-228ENST00000490135 ALDH1L1O75891 902 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 LDHBP07195 334 aaKnown RBP7.85□□□□□ -1.15
SYNE1-228ENST00000490135 PUM3Q15397 648 aaKnown RBP7.85□□□□□ -1.15
SYNE1-228ENST00000490135 ZC3H12BQ5HYM0 836 aaKnown RBP7.85□□□□□ -1.15
SYNE1-228ENST00000490135 SLC9C2Q5TAH2 1124 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 SCYL2Q6P3W7 929 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 ZBTB8BQ8NAP8 495 aaPredicted RBP7.85□□□□□ -1.15
SYNE1-228ENST00000490135 NUDT16Q96DE0 195 aaKnown RBP7.85□□□□□ -1.15
SYNE1-228ENST00000490135 ANKRD27Q96NW4 1050 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 PLAAQ9Y263 795 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 ERBB3P21860 1342 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.85□□□□□ -1.15
SYNE1-228ENST00000490135 NAIPQ13075 1403 aa7.85□□□□□ -1.15
SYNE1-228ENST00000490135 POTEFA5A3E0 1075 aa7.84□□□□□ -1.15
SYNE1-228ENST00000490135 F8W8V4 182 aa7.84□□□□□ -1.15
SYNE1-228ENST00000490135 RIMBP2O15034 1052 aa7.84□□□□□ -1.15
SYNE1-228ENST00000490135 MAN1A2O60476 641 aa7.84□□□□□ -1.15
SYNE1-228ENST00000490135 EEF1DP29692 281 aaKnown RBP7.84□□□□□ -1.15
SYNE1-228ENST00000490135 KRT33BQ14525 404 aa7.84□□□□□ -1.15
SYNE1-228ENST00000490135 PDXDC1Q6P996 788 aa7.84□□□□□ -1.15
SYNE1-228ENST00000490135 PEX5LQ8IYB4 626 aa7.84□□□□□ -1.15
SYNE1-228ENST00000490135 MCUQ8NE86 351 aa7.84□□□□□ -1.15
SYNE1-228ENST00000490135 NUP58Q9BVL2 599 aa7.84□□□□□ -1.15
SYNE1-228ENST00000490135 SUGCTQ9HAC7 445 aa7.84□□□□□ -1.15
SYNE1-228ENST00000490135 DMAP1Q9NPF5 467 aaPredicted RBP7.84□□□□□ -1.15
SYNE1-228ENST00000490135 UBN1Q9NPG3 1134 aa7.84□□□□□ -1.15
SYNE1-228ENST00000490135 IL1RAPL1Q9NZN1 696 aa7.84□□□□□ -1.15
SYNE1-228ENST00000490135 CDV3Q9UKY7 258 aaKnown RBP7.84□□□□□ -1.15
SYNE1-228ENST00000490135 ATXN2Q99700 1313 aaKnown RBP7.84□□□□□ -1.15
SYNE1-228ENST00000490135 TMEM247A6NEH6 219 aa7.84□□□□□ -1.15
SYNE1-228ENST00000490135 SOWAHDA6NJG2 315 aa7.84□□□□□ -1.15
SYNE1-228ENST00000490135 USP14P54578 494 aa7.84□□□□□ -1.15
SYNE1-228ENST00000490135 TUBA1BP68363 451 aa7.84□□□□□ -1.15
SYNE1-228ENST00000490135 GUCY2DQ02846 1103 aa7.84□□□□□ -1.15
SYNE1-228ENST00000490135 IFRD2Q12894 506 aaPredicted RBP7.84□□□□□ -1.15
SYNE1-228ENST00000490135 TUBA1AQ71U36 451 aa7.84□□□□□ -1.15
SYNE1-228ENST00000490135 IQCF2Q8IXL9 164 aa7.84□□□□□ -1.15
SYNE1-228ENST00000490135 CDKL2Q92772 493 aa7.84□□□□□ -1.15
SYNE1-228ENST00000490135 ZBED2Q9BTP6 218 aa7.84□□□□□ -1.15
SYNE1-228ENST00000490135 NDUFB5O43674 189 aa7.84□□□□□ -1.15
SYNE1-228ENST00000490135 MSL3P1P0C860 447 aa7.84□□□□□ -1.15
SYNE1-228ENST00000490135 KRT4P19013 534 aa7.84□□□□□ -1.15
SYNE1-228ENST00000490135 LONP1P36776 959 aaKnown RBP7.84□□□□□ -1.15
SYNE1-228ENST00000490135 PDE1AP54750 535 aa7.84□□□□□ -1.15
SYNE1-228ENST00000490135 LMBRD2Q68DH5 695 aaPredicted RBP7.84□□□□□ -1.15
SYNE1-228ENST00000490135 ATL3Q6DD88 541 aa7.84□□□□□ -1.15
SYNE1-228ENST00000490135 FAAH2Q6GMR7 532 aa7.84□□□□□ -1.15
SYNE1-228ENST00000490135 KLC3Q6P597 504 aa7.84□□□□□ -1.15
SYNE1-228ENST00000490135 ATP6V1G3Q96LB4 118 aa7.84□□□□□ -1.15
SYNE1-228ENST00000490135 PSMB7Q99436 277 aa7.84□□□□□ -1.15
SYNE1-228ENST00000490135 TEX12Q9BXU0 123 aa7.84□□□□□ -1.15
SYNE1-228ENST00000490135 ANKRD2Q9GZV1 360 aa7.84□□□□□ -1.15
SYNE1-228ENST00000490135 NOVA2Q9UNW9 492 aaKnown RBP7.84□□□□□ -1.15
SYNE1-228ENST00000490135 PIK3R4Q99570 1358 aa7.84□□□□□ -1.15
SYNE1-228ENST00000490135 SNRPA1P09661 255 aaKnown RBP7.84□□□□□ -1.15
SYNE1-228ENST00000490135 CCDC159P0C7I6 412 aa7.84□□□□□ -1.15
SYNE1-228ENST00000490135 SRGAP2BP0DMP2 458 aa7.84□□□□□ -1.15
SYNE1-228ENST00000490135 RFC5P40937 340 aa7.84□□□□□ -1.15
SYNE1-228ENST00000490135 SLC9A5Q14940 896 aa7.84□□□□□ -1.15
SYNE1-228ENST00000490135 ARMCX5Q6P1M9 558 aa7.84□□□□□ -1.15
SYNE1-228ENST00000490135 FBXL13Q8NEE6 735 aa7.84□□□□□ -1.15
SYNE1-228ENST00000490135 TBRG4Q969Z0 631 aaKnown RBP eCLIP7.84□□□□□ -1.15
SYNE1-228ENST00000490135 WDR24Q96S15 920 aa7.84□□□□□ -1.15
SYNE1-228ENST00000490135 DMRT2Q9Y5R5 561 aa7.84□□□□□ -1.15
SYNE1-228ENST00000490135 ZBBXA8MT70 800 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 EXOC3O60645 756 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 GSTT1P30711 240 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 C6orf118Q5T5N4 469 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 EMBQ6PCB8 327 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 MAEAQ7L5Y9 396 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 RPS6KC1Q96S38 1066 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 MTMR6Q9Y217 621 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 TOP2AP11388 1531 aaKnown RBP7.83□□□□□ -1.16
SYNE1-228ENST00000490135 SFI1A8K8P3 1242 aa7.83□□□□□ -1.16
SYNE1-228ENST00000490135 DDX39AO00148 427 aaKnown RBP7.83□□□□□ -1.16
SYNE1-228ENST00000490135 DTNBO60941 627 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms