RNA–Protein interactions for RNA: ENST00000489892.1

TRIM40-208, Transcript of tripartite motif containing 40, humanhuman

TSL 3

Gene TRIM40, Length 941 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-208ENST00000489892 ZNF76P36508 570 aa13.19□□□□□ -0.3
TRIM40-208ENST00000489892 PLS1Q14651 629 aa13.19□□□□□ -0.3
TRIM40-208ENST00000489892 TMEM132BQ14DG7 1078 aa13.19□□□□□ -0.3
TRIM40-208ENST00000489892 RESP18Q5W5W9 173 aa13.19□□□□□ -0.3
TRIM40-208ENST00000489892 KANK3Q6NY19 840 aa13.19□□□□□ -0.3
TRIM40-208ENST00000489892 SMCR8Q8TEV9 937 aaPredicted RBP13.19□□□□□ -0.3
TRIM40-208ENST00000489892 CLEC4DQ8WXI8 215 aa13.19□□□□□ -0.3
TRIM40-208ENST00000489892 TIGD1Q96MW7 591 aa13.19□□□□□ -0.3
TRIM40-208ENST00000489892 NUP62CLQ9H1M0 184 aa13.19□□□□□ -0.3
TRIM40-208ENST00000489892 ZKSCAN5Q9Y2L8 839 aa13.19□□□□□ -0.3
TRIM40-208ENST00000489892 CAVIN2O95810 425 aa13.18□□□□□ -0.3
TRIM40-208ENST00000489892 HOXA13P31271 388 aaPredicted RBP13.18□□□□□ -0.3
TRIM40-208ENST00000489892 SYKP43405 635 aa13.18□□□□□ -0.3
TRIM40-208ENST00000489892 Q4G0T1 1027 aa13.18□□□□□ -0.3
TRIM40-208ENST00000489892 NOM1Q5C9Z4 860 aaKnown RBP13.18□□□□□ -0.3
TRIM40-208ENST00000489892 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.18□□□□□ -0.3
TRIM40-208ENST00000489892 NIPA1Q7RTP0 329 aa13.18□□□□□ -0.3
TRIM40-208ENST00000489892 CTU1Q7Z7A3 348 aaKnown RBP13.18□□□□□ -0.3
TRIM40-208ENST00000489892 FCHSD1Q86WN1 690 aa13.18□□□□□ -0.3
TRIM40-208ENST00000489892 SHCBP1Q8NEM2 672 aa13.18□□□□□ -0.3
TRIM40-208ENST00000489892 FAM20AQ96MK3 541 aa13.18□□□□□ -0.3
TRIM40-208ENST00000489892 MBOAT7Q96N66 472 aa13.18□□□□□ -0.3
TRIM40-208ENST00000489892 P2RX7Q99572 595 aaKnown RBP13.18□□□□□ -0.3
TRIM40-208ENST00000489892 SPATC1LQ9H0A9 340 aa13.18□□□□□ -0.3
TRIM40-208ENST00000489892 MROH8Q9H579 483 aa13.18□□□□□ -0.3
TRIM40-208ENST00000489892 HOMER2Q9NSB8 354 aa13.18□□□□□ -0.3
TRIM40-208ENST00000489892 DACT1Q9NYF0 836 aa13.18□□□□□ -0.3
TRIM40-208ENST00000489892 FRMPD4Q14CM0 1322 aa13.17□□□□□ -0.3
TRIM40-208ENST00000489892 VWA3AA6NCI4 1184 aa13.17□□□□□ -0.3
TRIM40-208ENST00000489892 NFIBO00712 420 aa13.17□□□□□ -0.3
TRIM40-208ENST00000489892 STAM2O75886 525 aa13.17□□□□□ -0.3
TRIM40-208ENST00000489892 GJA5P36382 358 aa13.17□□□□□ -0.3
TRIM40-208ENST00000489892 FXR2P51116 673 aaKnown RBP eCLIP13.17□□□□□ -0.3
TRIM40-208ENST00000489892 SREBF2Q12772 1141 aa13.17□□□□□ -0.3
TRIM40-208ENST00000489892 MOGSQ13724 837 aa13.17□□□□□ -0.3
TRIM40-208ENST00000489892 GPAT2Q6NUI2 795 aa13.17□□□□□ -0.3
TRIM40-208ENST00000489892 NSMFQ6X4W1 530 aa13.17□□□□□ -0.3
TRIM40-208ENST00000489892 ELOA2Q8IYF1 753 aaPredicted RBP13.17□□□□□ -0.3
TRIM40-208ENST00000489892 DNERQ8NFT8 737 aa13.17□□□□□ -0.3
TRIM40-208ENST00000489892 SYTL5Q8TDW5 730 aaPredicted RBP13.17□□□□□ -0.3
TRIM40-208ENST00000489892 NSUN6Q8TEA1 469 aaKnown RBP13.17□□□□□ -0.3
TRIM40-208ENST00000489892 CRYGNQ8WXF5 182 aa13.17□□□□□ -0.3
TRIM40-208ENST00000489892 MS4A4AQ96JQ5 239 aa13.17□□□□□ -0.3
TRIM40-208ENST00000489892 CLSTN2Q9H4D0 955 aa13.17□□□□□ -0.3
TRIM40-208ENST00000489892 ADD3Q9UEY8 706 aaKnown RBP13.17□□□□□ -0.3
TRIM40-208ENST00000489892 KCNH3Q9ULD8 1083 aa13.17□□□□□ -0.3
TRIM40-208ENST00000489892 RPTORQ8N122 1335 aa13.16□□□□□ -0.3
TRIM40-208ENST00000489892 COL11A1P12107 1806 aaPredicted RBP13.16□□□□□ -0.3
TRIM40-208ENST00000489892 MYH7BA7E2Y1 1941 aa13.16□□□□□ -0.3
TRIM40-208ENST00000489892 LOC102724159A0A0B4J2E5 919 aa13.16□□□□□ -0.3
TRIM40-208ENST00000489892 TESPA1A2RU30 521 aaPredicted RBP13.16□□□□□ -0.3
TRIM40-208ENST00000489892 PDHXO00330 501 aa13.16□□□□□ -0.3
TRIM40-208ENST00000489892 ADAMTS3O15072 1205 aa13.16□□□□□ -0.3
TRIM40-208ENST00000489892 OFD1O75665 1012 aa13.16□□□□□ -0.3
TRIM40-208ENST00000489892 CCDC192P0DO97 292 aa13.16□□□□□ -0.3
TRIM40-208ENST00000489892 PFKFB1P16118 471 aa13.16□□□□□ -0.3
TRIM40-208ENST00000489892 LIG1P18858 919 aa13.16□□□□□ -0.3
TRIM40-208ENST00000489892 UBA7P41226 1012 aa13.16□□□□□ -0.3
TRIM40-208ENST00000489892 RPS6P62753 249 aaKnown RBP13.16□□□□□ -0.3
TRIM40-208ENST00000489892 PDIA5Q14554 519 aa13.16□□□□□ -0.3
TRIM40-208ENST00000489892 PWP2Q15269 919 aaKnown RBP13.16□□□□□ -0.3
TRIM40-208ENST00000489892 ZRSR1Q15695 479 aaKnown RBP13.16□□□□□ -0.3
TRIM40-208ENST00000489892 PCNX4Q63HM2 1172 aa13.16□□□□□ -0.3
TRIM40-208ENST00000489892 FMR1NBQ8N0W7 255 aaPredicted RBP13.16□□□□□ -0.3
TRIM40-208ENST00000489892 C4orf32Q8N8J7 132 aa13.16□□□□□ -0.3
TRIM40-208ENST00000489892 SLC17A8Q8NDX2 589 aa13.16□□□□□ -0.3
TRIM40-208ENST00000489892 RASSF8Q8NHQ8 419 aa13.16□□□□□ -0.3
TRIM40-208ENST00000489892 SDF4Q9BRK5 362 aa13.16□□□□□ -0.3
TRIM40-208ENST00000489892 CSRNP2Q9H175 543 aa13.16□□□□□ -0.3
TRIM40-208ENST00000489892 TNMDQ9H2S6 317 aa13.16□□□□□ -0.3
TRIM40-208ENST00000489892 HPSEQ9Y251 543 aa13.16□□□□□ -0.3
TRIM40-208ENST00000489892 SZT2Q5T011 3432 aa13.15□□□□□ -0.3
TRIM40-208ENST00000489892 A0A1B0GVL5 298 aa13.15□□□□□ -0.3
TRIM40-208ENST00000489892 NR1I2O75469 434 aa13.15□□□□□ -0.3
TRIM40-208ENST00000489892 TDP2O95551 362 aa13.15□□□□□ -0.3
TRIM40-208ENST00000489892 BCRP11274 1271 aa13.15□□□□□ -0.3
TRIM40-208ENST00000489892 CCND2P30279 289 aa13.15□□□□□ -0.3
TRIM40-208ENST00000489892 NDUFA8P51970 172 aa13.15□□□□□ -0.3
TRIM40-208ENST00000489892 KCTD2Q14681 263 aa13.15□□□□□ -0.3
TRIM40-208ENST00000489892 TPRNQ4KMQ1 711 aa13.15□□□□□ -0.3
TRIM40-208ENST00000489892 CEP55Q53EZ4 464 aa13.15□□□□□ -0.3
TRIM40-208ENST00000489892 MUM1L1Q5H9M0 696 aa13.15□□□□□ -0.3
TRIM40-208ENST00000489892 ARHGEF16Q5VV41 709 aa13.15□□□□□ -0.3
TRIM40-208ENST00000489892 SHC4Q6S5L8 630 aa13.15□□□□□ -0.3
TRIM40-208ENST00000489892 POTEDQ86YR6 584 aa13.15□□□□□ -0.3
TRIM40-208ENST00000489892 ANKRD35Q8N283 1001 aa13.15□□□□□ -0.3
TRIM40-208ENST00000489892 KCTD17Q8N5Z5 321 aa13.15□□□□□ -0.3
TRIM40-208ENST00000489892 IQUBQ8NA54 791 aa13.15□□□□□ -0.3
TRIM40-208ENST00000489892 ENGASEQ8NFI3 743 aa13.15□□□□□ -0.3
TRIM40-208ENST00000489892 GPRC5AQ8NFJ5 357 aa13.15□□□□□ -0.3
TRIM40-208ENST00000489892 ERMNQ8TAM6 284 aa13.15□□□□□ -0.3
TRIM40-208ENST00000489892 BRI3BPQ8WY22 251 aa13.15□□□□□ -0.3
TRIM40-208ENST00000489892 CDHR1Q96JP9 859 aa13.15□□□□□ -0.3
TRIM40-208ENST00000489892 NAP1L5Q96NT1 182 aaPredicted RBP13.15□□□□□ -0.3
TRIM40-208ENST00000489892 MTMR9Q96QG7 549 aa13.15□□□□□ -0.3
TRIM40-208ENST00000489892 IWS1Q96ST2 819 aa13.15□□□□□ -0.3
TRIM40-208ENST00000489892 RMDN3Q96TC7 470 aa13.15□□□□□ -0.3
TRIM40-208ENST00000489892 PAGR1Q9BTK6 254 aa13.15□□□□□ -0.3
TRIM40-208ENST00000489892 FUCA2Q9BTY2 467 aa13.15□□□□□ -0.3
TRIM40-208ENST00000489892 CUEDC2Q9H467 287 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms