RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 PANK2Q9BZ23 570 aa24.45■■□□□ 1.5
SMC4-221ENST00000489573 CCSER1Q9C0I3 900 aa24.45■■□□□ 1.5
SMC4-221ENST00000489573 CYP39A1Q9NYL5 469 aa24.45■■□□□ 1.5
SMC4-221ENST00000489573 PP2D1A8MPX8 630 aa24.44■■□□□ 1.5
SMC4-221ENST00000489573 SLC25A27O95847 323 aa24.44■■□□□ 1.5
SMC4-221ENST00000489573 CEP55Q53EZ4 464 aa24.44■■□□□ 1.5
SMC4-221ENST00000489573 PCNX4Q63HM2 1172 aa24.44■■□□□ 1.5
SMC4-221ENST00000489573 GAS2L3Q86XJ1 694 aa24.44■■□□□ 1.5
SMC4-221ENST00000489573 DHX58Q96C10 678 aa24.44■■□□□ 1.5
SMC4-221ENST00000489573 RMDN3Q96TC7 470 aa24.44■■□□□ 1.5
SMC4-221ENST00000489573 MOV10L1Q9BXT6 1211 aaKnown RBP24.44■■□□□ 1.5
SMC4-221ENST00000489573 TXNRD2Q9NNW7 524 aa24.44■■□□□ 1.5
SMC4-221ENST00000489573 PXMP2Q9NR77 195 aa24.44■■□□□ 1.5
SMC4-221ENST00000489573 USP25Q9UHP3 1055 aa24.44■■□□□ 1.5
SMC4-221ENST00000489573 SERTAD1Q9UHV2 236 aa24.44■■□□□ 1.5
SMC4-221ENST00000489573 ACTN4O43707 911 aaKnown RBP24.43■■□□□ 1.5
SMC4-221ENST00000489573 CYP2C8P10632 490 aa24.43■■□□□ 1.5
SMC4-221ENST00000489573 CDC25AP30304 524 aa24.43■■□□□ 1.5
SMC4-221ENST00000489573 SETQ01105 290 aaPredicted RBP24.43■■□□□ 1.5
SMC4-221ENST00000489573 PDIA5Q14554 519 aa24.43■■□□□ 1.5
SMC4-221ENST00000489573 RGMBQ6NW40 437 aa24.43■■□□□ 1.5
SMC4-221ENST00000489573 NCAPG2Q86XI2 1143 aa24.43■■□□□ 1.5
SMC4-221ENST00000489573 ELOA2Q8IYF1 753 aaPredicted RBP24.43■■□□□ 1.5
SMC4-221ENST00000489573 IL31RAQ8NI17 732 aa24.43■■□□□ 1.5
SMC4-221ENST00000489573 CYP2W1Q8TAV3 490 aa24.43■■□□□ 1.5
SMC4-221ENST00000489573 FAM20AQ96MK3 541 aa24.43■■□□□ 1.5
SMC4-221ENST00000489573 TSPY26PQ9H489 355 aa24.43■■□□□ 1.5
SMC4-221ENST00000489573 PCDHA12Q9UN75 941 aa24.43■■□□□ 1.5
SMC4-221ENST00000489573 PFASO15067 1338 aa24.43■■□□□ 1.5
SMC4-221ENST00000489573 EIF2AK2P19525 551 aaKnown RBP24.42■■□□□ 1.5
SMC4-221ENST00000489573 PGM5Q15124 567 aa24.42■■□□□ 1.5
SMC4-221ENST00000489573 ARHGEF16Q5VV41 709 aa24.42■■□□□ 1.5
SMC4-221ENST00000489573 PLA2G4DQ86XP0 818 aa24.42■■□□□ 1.5
SMC4-221ENST00000489573 SMCR8Q8TEV9 937 aaPredicted RBP24.42■■□□□ 1.5
SMC4-221ENST00000489573 PDCD2LQ9BRP1 358 aa24.42■■□□□ 1.5
SMC4-221ENST00000489573 FUCA2Q9BTY2 467 aa24.42■■□□□ 1.5
SMC4-221ENST00000489573 LRWD1Q9UFC0 647 aa24.42■■□□□ 1.5
SMC4-221ENST00000489573 CCDC39Q9UFE4 941 aa24.42■■□□□ 1.5
SMC4-221ENST00000489573 GOLGA6L3A6NEY3 463 aa24.42■■□□□ 1.5
SMC4-221ENST00000489573 MSH4O15457 936 aa24.42■■□□□ 1.5
SMC4-221ENST00000489573 KARSQ15046 597 aaKnown RBP24.42■■□□□ 1.5
SMC4-221ENST00000489573 KANK3Q6NY19 840 aa24.42■■□□□ 1.5
SMC4-221ENST00000489573 CABP7Q86V35 215 aa24.42■■□□□ 1.5
SMC4-221ENST00000489573 ANKRD35Q8N283 1001 aa24.42■■□□□ 1.5
SMC4-221ENST00000489573 FAM43AQ8N2R8 423 aa24.42■■□□□ 1.5
SMC4-221ENST00000489573 IQUBQ8NA54 791 aa24.42■■□□□ 1.5
SMC4-221ENST00000489573 RASSF8Q8NHQ8 419 aa24.42■■□□□ 1.5
SMC4-221ENST00000489573 GJA10Q969M2 543 aa24.42■■□□□ 1.5
SMC4-221ENST00000489573 CCDC34Q96HJ3 373 aa24.42■■□□□ 1.5
SMC4-221ENST00000489573 MXRA8Q9BRK3 442 aa24.42■■□□□ 1.5
SMC4-221ENST00000489573 DISC1Q9NRI5 854 aa24.42■■□□□ 1.5
SMC4-221ENST00000489573 HOOK1Q9UJC3 728 aaKnown RBP24.42■■□□□ 1.5
SMC4-221ENST00000489573 TLL2Q9Y6L7 1015 aa24.42■■□□□ 1.5
SMC4-221ENST00000489573 TESPA1A2RU30 521 aaPredicted RBP24.41■■□□□ 1.5
SMC4-221ENST00000489573 POTEMA6NI47 508 aa24.41■■□□□ 1.5
SMC4-221ENST00000489573 SLFN14P0C7P3 912 aa24.41■■□□□ 1.5
SMC4-221ENST00000489573 CCDC192P0DO97 292 aa24.41■■□□□ 1.5
SMC4-221ENST00000489573 ERCC3P19447 782 aa24.41■■□□□ 1.5
SMC4-221ENST00000489573 E2F4Q16254 413 aa24.41■■□□□ 1.5
SMC4-221ENST00000489573 DHX30Q7L2E3 1194 aaKnown RBP eCLIP24.41■■□□□ 1.51e-6■■■■■ 406.9
SMC4-221ENST00000489573 NIPA1Q7RTP0 329 aa24.41■■□□□ 1.5
SMC4-221ENST00000489573 CEP57L1Q8IYX8 460 aa24.41■■□□□ 1.5
SMC4-221ENST00000489573 PURBQ96QR8 312 aaKnown RBP24.41■■□□□ 1.5
SMC4-221ENST00000489573 FSD2A1L4K1 749 aa24.4■■□□□ 1.5
SMC4-221ENST00000489573 MEIS1O00470 390 aa24.4■■□□□ 1.5
SMC4-221ENST00000489573 TOMM70O94826 608 aa24.4■■□□□ 1.5
SMC4-221ENST00000489573 ERVK-9P63128 1117 aa24.4■■□□□ 1.5
SMC4-221ENST00000489573 ERVK-24P63145 666 aa24.4■■□□□ 1.5
SMC4-221ENST00000489573 Q3C1V9 767 aa24.4■■□□□ 1.5
SMC4-221ENST00000489573 XRRA1Q6P2D8 792 aa24.4■■□□□ 1.5
SMC4-221ENST00000489573 NSUN6Q8TEA1 469 aaKnown RBP24.4■■□□□ 1.5
SMC4-221ENST00000489573 PARK7Q99497 189 aaKnown RBP24.4■■□□□ 1.5
SMC4-221ENST00000489573 UBIAD1Q9Y5Z9 338 aa24.4■■□□□ 1.5
SMC4-221ENST00000489573 MANSC4A6NHS7 340 aaPredicted RBP24.39■■□□□ 1.5
SMC4-221ENST00000489573 SLC10A3P09131 477 aa24.39■■□□□ 1.5
SMC4-221ENST00000489573 HSPA6P17066 643 aa24.39■■□□□ 1.5
SMC4-221ENST00000489573 GCLCP48506 637 aaPredicted RBP24.39■■□□□ 1.5
SMC4-221ENST00000489573 SASS6Q6UVJ0 657 aa24.39■■□□□ 1.5
SMC4-221ENST00000489573 UIMC1Q96RL1 719 aa24.39■■□□□ 1.5
SMC4-221ENST00000489573 PTPN18Q99952 460 aa24.39■■□□□ 1.5
SMC4-221ENST00000489573 MMTAG2Q9BU76 263 aaKnown RBP24.39■■□□□ 1.5
SMC4-221ENST00000489573 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP24.38■■□□□ 1.49
SMC4-221ENST00000489573 BCRP11274 1271 aa24.38■■□□□ 1.49
SMC4-221ENST00000489573 ITGB5P18084 799 aa24.38■■□□□ 1.49
SMC4-221ENST00000489573 CCND2P30279 289 aa24.38■■□□□ 1.49
SMC4-221ENST00000489573 STAT6P42226 847 aa24.38■■□□□ 1.49
SMC4-221ENST00000489573 MRPS9P82933 396 aaKnown RBP24.38■■□□□ 1.49
SMC4-221ENST00000489573 TYRO3Q06418 890 aa24.38■■□□□ 1.49
SMC4-221ENST00000489573 RRAGBQ5VZM2 374 aa24.38■■□□□ 1.49
SMC4-221ENST00000489573 KRT79Q5XKE5 535 aa24.38■■□□□ 1.49
SMC4-221ENST00000489573 SHCBP1Q8NEM2 672 aa24.38■■□□□ 1.49
SMC4-221ENST00000489573 ZFP91Q96JP5 570 aaPredicted RBP24.38■■□□□ 1.49
SMC4-221ENST00000489573 KIAA1468Q9P260 1216 aa24.38■■□□□ 1.49
SMC4-221ENST00000489573 MYCLP12524 364 aaPredicted RBP24.37■■□□□ 1.49
SMC4-221ENST00000489573 POSTNQ15063 836 aa24.37■■□□□ 1.49
SMC4-221ENST00000489573 GPRC5AQ8NFJ5 357 aa24.37■■□□□ 1.49
SMC4-221ENST00000489573 ERCC4Q92889 916 aaPredicted RBP24.37■■□□□ 1.49
SMC4-221ENST00000489573 SLC5A5Q92911 643 aa24.37■■□□□ 1.49
SMC4-221ENST00000489573 CALML4Q96GE6 196 aa24.37■■□□□ 1.49
SMC4-221ENST00000489573 MROH8Q9H579 483 aa24.37■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms