RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 A6NJR5 290 aa24.42■■□□□ 1.5
LIME1-207ENST00000489212 SOX1O00570 391 aaPredicted RBP24.42■■□□□ 1.5
LIME1-207ENST00000489212 MEIS2O14770 477 aa24.42■■□□□ 1.5
LIME1-207ENST00000489212 EPB41L2O43491 1005 aaKnown RBP24.42■■□□□ 1.5
LIME1-207ENST00000489212 RPS6KB1P23443 525 aa24.42■■□□□ 1.5
LIME1-207ENST00000489212 CPT1AP50416 773 aa24.42■■□□□ 1.5
LIME1-207ENST00000489212 PURAQ00577 322 aaKnown RBP24.42■■□□□ 1.5
LIME1-207ENST00000489212 APOBRQ0VD83 1088 aa24.42■■□□□ 1.5
LIME1-207ENST00000489212 ITGA7Q13683 1181 aa24.42■■□□□ 1.5
LIME1-207ENST00000489212 USP17L6PQ6QN14 398 aa24.42■■□□□ 1.5
LIME1-207ENST00000489212 TDHQ8IZJ6 230 aa24.42■■□□□ 1.5
LIME1-207ENST00000489212 ZFP91Q96JP5 570 aaPredicted RBP24.42■■□□□ 1.5
LIME1-207ENST00000489212 DDX41Q9UJV9 622 aaKnown RBP24.42■■□□□ 1.5
LIME1-207ENST00000489212 TBX21Q9UL17 535 aa24.42■■□□□ 1.5
LIME1-207ENST00000489212 FRMPD4Q14CM0 1322 aa24.41■■□□□ 1.5
LIME1-207ENST00000489212 GOLGA8AA7E2F4 631 aa24.41■■□□□ 1.5
LIME1-207ENST00000489212 GOLGA8BA8MQT2 603 aa24.41■■□□□ 1.5
LIME1-207ENST00000489212 MYL3P08590 195 aa24.41■■□□□ 1.5
LIME1-207ENST00000489212 CDC27P30260 824 aa24.41■■□□□ 1.5
LIME1-207ENST00000489212 FGD1P98174 961 aa24.41■■□□□ 1.5
LIME1-207ENST00000489212 ARHGAP1Q07960 439 aa24.41■■□□□ 1.5
LIME1-207ENST00000489212 BRF1Q92994 677 aa24.41■■□□□ 1.5
LIME1-207ENST00000489212 POLR3EQ9NVU0 708 aa24.41■■□□□ 1.5
LIME1-207ENST00000489212 SCN10AQ9Y5Y9 1956 aa24.4■■□□□ 1.5
LIME1-207ENST00000489212 LAMA2P24043 3122 aaKnown RBP24.4■■□□□ 1.5
LIME1-207ENST00000489212 PIK3CDO00329 1044 aa24.4■■□□□ 1.5
LIME1-207ENST00000489212 CD4P01730 458 aa24.4■■□□□ 1.5
LIME1-207ENST00000489212 CASTP20810 708 aaKnown RBP24.4■■□□□ 1.5
LIME1-207ENST00000489212 AFG1LQ8WV93 481 aa24.4■■□□□ 1.5
LIME1-207ENST00000489212 GPKOWQ92917 476 aaPredicted RBP eCLIP24.4■■□□□ 1.5
LIME1-207ENST00000489212 MRVI1Q9Y6F6 885 aa24.4■■□□□ 1.5
LIME1-207ENST00000489212 GH1P01241 217 aa24.39■■□□□ 1.49
LIME1-207ENST00000489212 RAG1P15918 1043 aa24.39■■□□□ 1.49
LIME1-207ENST00000489212 PSMA5P28066 241 aa24.39■■□□□ 1.49
LIME1-207ENST00000489212 CCND2P30279 289 aa24.39■■□□□ 1.49
LIME1-207ENST00000489212 RCAN1P53805 252 aa24.39■■□□□ 1.49
LIME1-207ENST00000489212 FBXL16Q8N461 479 aa24.39■■□□□ 1.49
LIME1-207ENST00000489212 SMARCC2Q8TAQ2 1214 aa24.39■■□□□ 1.49
LIME1-207ENST00000489212 MTG1Q9BT17 334 aaPredicted RBP24.39■■□□□ 1.49
LIME1-207ENST00000489212 AGXT2Q9BYV1 514 aa24.39■■□□□ 1.49
LIME1-207ENST00000489212 NAP1L2Q9ULW6 460 aaPredicted RBP24.39■■□□□ 1.49
LIME1-207ENST00000489212 MYH7BA7E2Y1 1941 aa24.38■■□□□ 1.49
LIME1-207ENST00000489212 MRPS9P82933 396 aaKnown RBP24.38■■□□□ 1.49
LIME1-207ENST00000489212 BRDTQ58F21 947 aaPredicted RBP24.38■■□□□ 1.49
LIME1-207ENST00000489212 WWC2Q6AWC2 1192 aa24.38■■□□□ 1.49
LIME1-207ENST00000489212 HEATR3Q7Z4Q2 680 aa24.38■■□□□ 1.49
LIME1-207ENST00000489212 CUL5Q93034 780 aa24.38■■□□□ 1.49
LIME1-207ENST00000489212 PSTPIP2Q9H939 334 aa24.38■■□□□ 1.49
LIME1-207ENST00000489212 MMP3P08254 477 aa24.37■■□□□ 1.49
LIME1-207ENST00000489212 ADD1P35611 737 aaKnown RBP24.37■■□□□ 1.49
LIME1-207ENST00000489212 METAP2P50579 478 aaKnown RBP eCLIP24.37■■□□□ 1.49
LIME1-207ENST00000489212 TYW1BQ6NUM6 668 aa24.37■■□□□ 1.49
LIME1-207ENST00000489212 PPP1R13LQ8WUF5 828 aa24.37■■□□□ 1.49
LIME1-207ENST00000489212 LRCH3Q96II8 777 aa24.37■■□□□ 1.49
LIME1-207ENST00000489212 TRPV6Q9H1D0 765 aa24.37■■□□□ 1.49
LIME1-207ENST00000489212 ZSWIM6Q9HCJ5 1215 aa24.37■■□□□ 1.49
LIME1-207ENST00000489212 V9GY48 417 aaPredicted RBP24.37■■□□□ 1.49
LIME1-207ENST00000489212 TLR3O15455 904 aaKnown RBP24.36■■□□□ 1.49
LIME1-207ENST00000489212 TIMP1P01033 207 aa24.36■■□□□ 1.49
LIME1-207ENST00000489212 EPHB4P54760 987 aa24.36■■□□□ 1.49
LIME1-207ENST00000489212 SP2Q02086 613 aa24.36■■□□□ 1.49
LIME1-207ENST00000489212 UBE2SQ16763 222 aa24.36■■□□□ 1.49
LIME1-207ENST00000489212 LRIT3Q3SXY7 679 aa24.36■■□□□ 1.49
LIME1-207ENST00000489212 EMID1Q96A84 441 aaPredicted RBP24.36■■□□□ 1.49
LIME1-207ENST00000489212 SEZ6LQ9BYH1 1024 aa24.36■■□□□ 1.49
LIME1-207ENST00000489212 NID2Q14112 1375 aa24.36■■□□□ 1.49
LIME1-207ENST00000489212 B4GALT4O60513 344 aa24.35■■□□□ 1.49
LIME1-207ENST00000489212 KPNA6O60684 536 aa24.35■■□□□ 1.49
LIME1-207ENST00000489212 NBPF20Q3BBV1 942 aa24.35■■□□□ 1.49
LIME1-207ENST00000489212 C9orf50Q5SZB4 431 aa24.35■■□□□ 1.49
LIME1-207ENST00000489212 RUFY3Q7L099 469 aa24.35■■□□□ 1.49
LIME1-207ENST00000489212 ALDH8A1Q9H2A2 487 aaPredicted RBP24.35■■□□□ 1.49
LIME1-207ENST00000489212 SORBS3O60504 671 aa24.34■■□□□ 1.49
LIME1-207ENST00000489212 UBA1P22314 1058 aaKnown RBP24.34■■□□□ 1.49
LIME1-207ENST00000489212 SEMA3FQ13275 785 aa24.34■■□□□ 1.49
LIME1-207ENST00000489212 SHHQ15465 462 aa24.34■■□□□ 1.49
LIME1-207ENST00000489212 KCNV1Q6PIU1 500 aa24.34■■□□□ 1.49
LIME1-207ENST00000489212 INPP4AQ96PE3 977 aaPredicted RBP24.34■■□□□ 1.49
LIME1-207ENST00000489212 BCAS3Q9H6U6 928 aa24.34■■□□□ 1.49
LIME1-207ENST00000489212 RTEL1Q9NZ71 1219 aa24.34■■□□□ 1.49
LIME1-207ENST00000489212 STXBP3O00186 592 aa24.33■■□□□ 1.49
LIME1-207ENST00000489212 LAMC2Q13753 1193 aa24.33■■□□□ 1.49
LIME1-207ENST00000489212 TOB2Q14106 344 aaPredicted RBP24.33■■□□□ 1.49
LIME1-207ENST00000489212 CELF3Q5SZQ8 465 aaKnown RBP24.33■■□□□ 1.49
LIME1-207ENST00000489212 MYSM1Q5VVJ2 828 aa24.33■■□□□ 1.49
LIME1-207ENST00000489212 PCNX4Q63HM2 1172 aa24.33■■□□□ 1.49
LIME1-207ENST00000489212 DHX37Q8IY37 1157 aaKnown RBP24.33■■□□□ 1.49
LIME1-207ENST00000489212 PPTC7Q8NI37 304 aa24.33■■□□□ 1.49
LIME1-207ENST00000489212 KAT2BQ92831 832 aa24.33■■□□□ 1.49
LIME1-207ENST00000489212 PPP1R12CQ9BZL4 782 aa24.33■■□□□ 1.49
LIME1-207ENST00000489212 TRMT13Q9NUP7 481 aaKnown RBP24.33■■□□□ 1.49
LIME1-207ENST00000489212 STAM2O75886 525 aa24.32■■□□□ 1.48
LIME1-207ENST00000489212 GGPS1O95749 300 aa24.32■■□□□ 1.48
LIME1-207ENST00000489212 TGFB3P10600 412 aa24.32■■□□□ 1.48
LIME1-207ENST00000489212 ICAM3P32942 547 aa24.32■■□□□ 1.48
LIME1-207ENST00000489212 NAPAP54920 295 aa24.32■■□□□ 1.48
LIME1-207ENST00000489212 EVCP57679 992 aa24.32■■□□□ 1.48
LIME1-207ENST00000489212 FPGSQ05932 587 aa24.32■■□□□ 1.48
LIME1-207ENST00000489212 MFSD5Q6N075 450 aa24.32■■□□□ 1.48
LIME1-207ENST00000489212 UPF3BQ9BZI7 483 aaKnown RBP24.32■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms