RNA–Protein interactions for RNA: ENST00000488228.1

UBE4B-210, Transcript of ubiquitination factor E4B, humanhuman

TSL 3

Gene UBE4B, Length 560 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-210ENST00000488228 STXBP2Q15833 593 aa12.64□□□□□ -0.39
UBE4B-210ENST00000488228 KRT40Q6A162 431 aa12.64□□□□□ -0.39
UBE4B-210ENST00000488228 TAPT1Q6NXT6 567 aa12.64□□□□□ -0.39
UBE4B-210ENST00000488228 SEPT14Q6ZU15 432 aa12.64□□□□□ -0.39
UBE4B-210ENST00000488228 BLIDQ8IZY5 108 aa12.64□□□□□ -0.39
UBE4B-210ENST00000488228 FAM184AQ8NB25 1140 aa12.64□□□□□ -0.39
UBE4B-210ENST00000488228 BICD2Q8TD16 824 aa12.64□□□□□ -0.39
UBE4B-210ENST00000488228 SNX21Q969T3 373 aa12.64□□□□□ -0.39
UBE4B-210ENST00000488228 FOXD4L1Q9NU39 408 aa12.64□□□□□ -0.39
UBE4B-210ENST00000488228 SYNRGQ9UMZ2 1314 aa12.63□□□□□ -0.39
UBE4B-210ENST00000488228 FAM205CA6NFA0 338 aa12.63□□□□□ -0.39
UBE4B-210ENST00000488228 RGS20O76081 388 aa12.63□□□□□ -0.39
UBE4B-210ENST00000488228 ARIH2O95376 493 aa12.63□□□□□ -0.39
UBE4B-210ENST00000488228 FOSP01100 380 aaPredicted RBP12.63□□□□□ -0.39
UBE4B-210ENST00000488228 SMPD1P17405 629 aa12.63□□□□□ -0.39
UBE4B-210ENST00000488228 XBP1P17861 261 aa12.63□□□□□ -0.39
UBE4B-210ENST00000488228 GJB2P29033 226 aa12.63□□□□□ -0.39
UBE4B-210ENST00000488228 SREBF1P36956 1147 aa12.63□□□□□ -0.39
UBE4B-210ENST00000488228 CUL4AQ13619 759 aa12.63□□□□□ -0.39
UBE4B-210ENST00000488228 TRIM29Q14134 588 aa12.63□□□□□ -0.39
UBE4B-210ENST00000488228 PCNX4Q63HM2 1172 aa12.63□□□□□ -0.39
UBE4B-210ENST00000488228 LHX8Q68G74 356 aa12.63□□□□□ -0.39
UBE4B-210ENST00000488228 VSIG10LQ86VR7 867 aa12.63□□□□□ -0.39
UBE4B-210ENST00000488228 C8orf76Q96K31 380 aa12.63□□□□□ -0.39
UBE4B-210ENST00000488228 EHMT1Q9H9B1 1298 aa12.63□□□□□ -0.39
UBE4B-210ENST00000488228 FAM184BQ9ULE4 1060 aa12.63□□□□□ -0.39
UBE4B-210ENST00000488228 SMC3Q9UQE7 1217 aa12.63□□□□□ -0.39
UBE4B-210ENST00000488228 MYADML2A6NDP7 307 aa12.62□□□□□ -0.39
UBE4B-210ENST00000488228 M0R2N6 131 aa12.62□□□□□ -0.39
UBE4B-210ENST00000488228 SORBS3O60504 671 aa12.62□□□□□ -0.39
UBE4B-210ENST00000488228 EIF3JO75822 258 aaKnown RBP12.62□□□□□ -0.39
UBE4B-210ENST00000488228 MMP1P03956 469 aa12.62□□□□□ -0.39
UBE4B-210ENST00000488228 MYCNP04198 464 aaPredicted RBP12.62□□□□□ -0.39
UBE4B-210ENST00000488228 RARBP10826 455 aa12.62□□□□□ -0.39
UBE4B-210ENST00000488228 EN2P19622 333 aaPredicted RBP12.62□□□□□ -0.39
UBE4B-210ENST00000488228 KRT2P35908 639 aa12.62□□□□□ -0.39
UBE4B-210ENST00000488228 GJA8P48165 433 aa12.62□□□□□ -0.39
UBE4B-210ENST00000488228 IRX5P78411 483 aaPredicted RBP12.62□□□□□ -0.39
UBE4B-210ENST00000488228 ARHGAP4P98171 946 aa12.62□□□□□ -0.39
UBE4B-210ENST00000488228 TNFAIP2Q03169 654 aa12.62□□□□□ -0.39
UBE4B-210ENST00000488228 NR5A1Q13285 461 aa12.62□□□□□ -0.39
UBE4B-210ENST00000488228 GALNT17Q6IS24 598 aa12.62□□□□□ -0.39
UBE4B-210ENST00000488228 TLK2Q86UE8 772 aa12.62□□□□□ -0.39
UBE4B-210ENST00000488228 TEX2Q8IWB9 1127 aa12.62□□□□□ -0.39
UBE4B-210ENST00000488228 DIS3L2Q8IYB7 885 aaKnown RBP12.62□□□□□ -0.39
UBE4B-210ENST00000488228 FAM177A1Q8N128 213 aaPredicted RBP12.62□□□□□ -0.39
UBE4B-210ENST00000488228 SCFD2Q8WU76 684 aa12.62□□□□□ -0.39
UBE4B-210ENST00000488228 COPS5Q92905 334 aa12.62□□□□□ -0.39
UBE4B-210ENST00000488228 WDR11Q9BZH6 1224 aa12.62□□□□□ -0.39
UBE4B-210ENST00000488228 CRISPLD2Q9H0B8 497 aa12.62□□□□□ -0.39
UBE4B-210ENST00000488228 XPNPEP3Q9NQH7 507 aa12.62□□□□□ -0.39
UBE4B-210ENST00000488228 RTEL1Q9NZ71 1219 aa12.62□□□□□ -0.39
UBE4B-210ENST00000488228 MRVI1Q9Y6F6 885 aa12.62□□□□□ -0.39
UBE4B-210ENST00000488228 RBM47A0AV96 593 aaKnown RBP12.61□□□□□ -0.39
UBE4B-210ENST00000488228 MSCO60682 206 aa12.61□□□□□ -0.39
UBE4B-210ENST00000488228 SGPL1O95470 568 aa12.61□□□□□ -0.39
UBE4B-210ENST00000488228 PGK1P00558 417 aa12.61□□□□□ -0.39
UBE4B-210ENST00000488228 SEMA3FQ13275 785 aa12.61□□□□□ -0.39
UBE4B-210ENST00000488228 EARS2Q5JPH6 523 aaKnown RBP12.61□□□□□ -0.39
UBE4B-210ENST00000488228 DIS3LQ8TF46 1054 aaKnown RBP12.61□□□□□ -0.39
UBE4B-210ENST00000488228 CRYGNQ8WXF5 182 aa12.61□□□□□ -0.39
UBE4B-210ENST00000488228 TNFRSF25Q93038 417 aa12.61□□□□□ -0.39
UBE4B-210ENST00000488228 INPP4AQ96PE3 977 aaPredicted RBP12.61□□□□□ -0.39
UBE4B-210ENST00000488228 BRMS1Q9HCU9 246 aa12.61□□□□□ -0.39
UBE4B-210ENST00000488228 PKD2L1Q9P0L9 805 aa12.61□□□□□ -0.39
UBE4B-210ENST00000488228 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.61□□□□□ -0.39
UBE4B-210ENST00000488228 CCDC194A0A1B0GVG4 234 aa12.6□□□□□ -0.39
UBE4B-210ENST00000488228 BTBD18B2RXH4 712 aa12.6□□□□□ -0.39
UBE4B-210ENST00000488228 KIF28PB7ZC32 967 aa12.6□□□□□ -0.39
UBE4B-210ENST00000488228 ADAMTS4O75173 837 aa12.6□□□□□ -0.39
UBE4B-210ENST00000488228 DUSP11O75319 330 aaKnown RBP12.6□□□□□ -0.39
UBE4B-210ENST00000488228 TFRCP02786 760 aaKnown RBP12.6□□□□□ -0.39
UBE4B-210ENST00000488228 TXNP10599 105 aaKnown RBP12.6□□□□□ -0.39
UBE4B-210ENST00000488228 ITGB5P18084 799 aa12.6□□□□□ -0.39
UBE4B-210ENST00000488228 UBA1P22314 1058 aaKnown RBP12.6□□□□□ -0.39
UBE4B-210ENST00000488228 TTLL4Q14679 1199 aa12.6□□□□□ -0.39
UBE4B-210ENST00000488228 NONOQ15233 471 aaKnown RBP eCLIP12.6□□□□□ -0.39
UBE4B-210ENST00000488228 LY6KQ17RY6 165 aa12.6□□□□□ -0.39
UBE4B-210ENST00000488228 INF2Q27J81 1249 aa12.6□□□□□ -0.39
UBE4B-210ENST00000488228 GNPTABQ3T906 1256 aa12.6□□□□□ -0.39
UBE4B-210ENST00000488228 DUSP28Q4G0W2 176 aa12.6□□□□□ -0.39
UBE4B-210ENST00000488228 XRRA1Q6P2D8 792 aa12.6□□□□□ -0.39
UBE4B-210ENST00000488228 CCDC62Q6P9F0 684 aa12.6□□□□□ -0.39
UBE4B-210ENST00000488228 PIK3AP1Q6ZUJ8 805 aa12.6□□□□□ -0.39
UBE4B-210ENST00000488228 KRT25Q7Z3Z0 450 aa12.6□□□□□ -0.39
UBE4B-210ENST00000488228 FBXO18Q8NFZ0 1043 aa12.6□□□□□ -0.39
UBE4B-210ENST00000488228 CYP2W1Q8TAV3 490 aa12.6□□□□□ -0.39
UBE4B-210ENST00000488228 TBCKQ8TEA7 893 aa12.6□□□□□ -0.39
UBE4B-210ENST00000488228 OGDHLQ9ULD0 1010 aa12.6□□□□□ -0.39
UBE4B-210ENST00000488228 GNEQ9Y223 722 aaKnown RBP12.6□□□□□ -0.39
UBE4B-210ENST00000488228 KIF3AQ9Y496 699 aa12.6□□□□□ -0.39
UBE4B-210ENST00000488228 UBIAD1Q9Y5Z9 338 aa12.6□□□□□ -0.39
UBE4B-210ENST00000488228 SCN10AQ9Y5Y9 1956 aa12.6□□□□□ -0.39
UBE4B-210ENST00000488228 FAM86B1E9PN63 330 aa12.59□□□□□ -0.39
UBE4B-210ENST00000488228 CTAGE5O15320 804 aa12.59□□□□□ -0.39
UBE4B-210ENST00000488228 STAM2O75886 525 aa12.59□□□□□ -0.39
UBE4B-210ENST00000488228 FARP2O94887 1054 aaPredicted RBP12.59□□□□□ -0.39
UBE4B-210ENST00000488228 FAM86B2P0C5J1 330 aa12.59□□□□□ -0.39
UBE4B-210ENST00000488228 C6orf222P0C671 652 aaPredicted RBP12.59□□□□□ -0.39
UBE4B-210ENST00000488228 MNX1P50219 401 aaPredicted RBP12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms