RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 ZNF655Q8N720 491 aaPredicted RBP5.39□□□□□ -1.55
PTCD3-216ENST00000487043 OR2W6PQ8NHA6 318 aa5.39□□□□□ -1.55
PTCD3-216ENST00000487043 PIWIL2Q8TC59 973 aaKnown RBP5.39□□□□□ -1.55
PTCD3-216ENST00000487043 MTMR8Q96EF0 704 aa5.39□□□□□ -1.55
PTCD3-216ENST00000487043 TTC1Q99614 292 aa5.39□□□□□ -1.55
PTCD3-216ENST00000487043 SMAD5Q99717 465 aaKnown RBP5.39□□□□□ -1.55
PTCD3-216ENST00000487043 SLC12A9Q9BXP2 914 aa5.39□□□□□ -1.55
PTCD3-216ENST00000487043 GPR62Q9BZJ7 368 aa5.39□□□□□ -1.55
PTCD3-216ENST00000487043 MBNL3Q9NUK0 354 aaKnown RBP5.39□□□□□ -1.55
PTCD3-216ENST00000487043 U3KQE9 123 aa5.39□□□□□ -1.55
PTCD3-216ENST00000487043 PHLDB1Q86UU1 1377 aa5.39□□□□□ -1.55
PTCD3-216ENST00000487043 SSU72P8A0A1W2PR75 194 aa5.38□□□□□ -1.55
PTCD3-216ENST00000487043 WASH4PA8MWX3 477 aa5.38□□□□□ -1.55
PTCD3-216ENST00000487043 ARNTLO00327 626 aa5.38□□□□□ -1.55
PTCD3-216ENST00000487043 IGF2BP3O00425 579 aaKnown RBP eCLIP5.38□□□□□ -1.55
PTCD3-216ENST00000487043 NEMP1O14524 444 aa5.38□□□□□ -1.55
PTCD3-216ENST00000487043 BRINP1O60477 761 aa5.38□□□□□ -1.55
PTCD3-216ENST00000487043 SYPP08247 313 aa5.38□□□□□ -1.55
PTCD3-216ENST00000487043 PYGMP11217 842 aa5.38□□□□□ -1.55
PTCD3-216ENST00000487043 LCP1P13796 627 aa5.38□□□□□ -1.55
PTCD3-216ENST00000487043 KCNA6P17658 529 aa5.38□□□□□ -1.55
PTCD3-216ENST00000487043 BMP8BP34820 402 aa5.38□□□□□ -1.55
PTCD3-216ENST00000487043 LTBRP36941 435 aa5.38□□□□□ -1.55
PTCD3-216ENST00000487043 MTMR1Q13613 665 aa5.38□□□□□ -1.55
PTCD3-216ENST00000487043 SART3Q15020 963 aaKnown RBP5.38□□□□□ -1.55
PTCD3-216ENST00000487043 IFI16Q16666 785 aaKnown RBP5.38□□□□□ -1.55
PTCD3-216ENST00000487043 AOC3Q16853 763 aa5.38□□□□□ -1.55
PTCD3-216ENST00000487043 ACBD5Q5T8D3 534 aaPredicted RBP5.38□□□□□ -1.55
PTCD3-216ENST00000487043 CDKAL1Q5VV42 579 aa5.38□□□□□ -1.55
PTCD3-216ENST00000487043 RSPO2Q6UXX9 243 aaPredicted RBP5.38□□□□□ -1.55
PTCD3-216ENST00000487043 C22orf34Q6ZV56 151 aa5.38□□□□□ -1.55
PTCD3-216ENST00000487043 NECAB2Q7Z6G3 386 aa5.38□□□□□ -1.55
PTCD3-216ENST00000487043 CCDC103Q8IW40 242 aa5.38□□□□□ -1.55
PTCD3-216ENST00000487043 NXPE1Q8N323 547 aa5.38□□□□□ -1.55
PTCD3-216ENST00000487043 IGSF22Q8N9C0 903 aa5.38□□□□□ -1.55
PTCD3-216ENST00000487043 DIO2Q92813 273 aa5.38□□□□□ -1.55
PTCD3-216ENST00000487043 HRASLS5Q96KN8 279 aa5.38□□□□□ -1.55
PTCD3-216ENST00000487043 ZFYVE21Q9BQ24 234 aa5.38□□□□□ -1.55
PTCD3-216ENST00000487043 POLR3GLQ9BT43 218 aa5.38□□□□□ -1.55
PTCD3-216ENST00000487043 KRTAP4-9Q9BYQ8 210 aa5.38□□□□□ -1.55
PTCD3-216ENST00000487043 ASPSCR1Q9BZE9 553 aa5.38□□□□□ -1.55
PTCD3-216ENST00000487043 CCDC8Q9H0W5 538 aaPredicted RBP5.38□□□□□ -1.55
PTCD3-216ENST00000487043 DUSP15Q9H1R2 295 aaPredicted RBP5.38□□□□□ -1.55
PTCD3-216ENST00000487043 TRIT1Q9H3H1 467 aaKnown RBP5.38□□□□□ -1.55
PTCD3-216ENST00000487043 IFT22Q9H7X7 185 aa5.38□□□□□ -1.55
PTCD3-216ENST00000487043 GPR27Q9NS67 375 aa5.38□□□□□ -1.55
PTCD3-216ENST00000487043 GPATCH2Q9NW75 528 aa5.38□□□□□ -1.55
PTCD3-216ENST00000487043 ADAMTS6Q9UKP5 1117 aa5.38□□□□□ -1.55
PTCD3-216ENST00000487043 COQ6Q9Y2Z9 468 aa5.38□□□□□ -1.55
PTCD3-216ENST00000487043 TDRD9Q8NDG6 1382 aaKnown RBP5.38□□□□□ -1.55
PTCD3-216ENST00000487043 WDR97A6NE52 1622 aa5.37□□□□□ -1.55
PTCD3-216ENST00000487043 ZNF891A8MT65 544 aaPredicted RBP5.37□□□□□ -1.55
PTCD3-216ENST00000487043 M0R2C6 588 aa5.37□□□□□ -1.55
PTCD3-216ENST00000487043 GLRX3O76003 335 aaKnown RBP5.37□□□□□ -1.55
PTCD3-216ENST00000487043 SRFP11831 508 aa5.37□□□□□ -1.55
PTCD3-216ENST00000487043 IL2P60568 153 aa5.37□□□□□ -1.55
PTCD3-216ENST00000487043 FBLN7Q53RD9 439 aa5.37□□□□□ -1.55
PTCD3-216ENST00000487043 E4F1Q66K89 784 aaPredicted RBP5.37□□□□□ -1.55
PTCD3-216ENST00000487043 RCSD1Q6JBY9 416 aa5.37□□□□□ -1.55
PTCD3-216ENST00000487043 SPATS2Q86XZ4 545 aaKnown RBP5.37□□□□□ -1.55
PTCD3-216ENST00000487043 WDR75Q8IWA0 830 aaKnown RBP5.37□□□□□ -1.55
PTCD3-216ENST00000487043 USHBP1Q8N6Y0 703 aa5.37□□□□□ -1.55
PTCD3-216ENST00000487043 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.37□□□□□ -1.551e-15■■□□□ 12.9
PTCD3-216ENST00000487043 COG1Q8WTW3 980 aa5.37□□□□□ -1.55
PTCD3-216ENST00000487043 TSR2Q969E8 191 aaKnown RBP5.37□□□□□ -1.55
PTCD3-216ENST00000487043 ALG1Q9BT22 464 aa5.37□□□□□ -1.55
PTCD3-216ENST00000487043 NPFFR2Q9Y5X5 522 aa5.37□□□□□ -1.55
PTCD3-216ENST00000487043 GAPVD1Q14C86 1478 aa5.37□□□□□ -1.55
PTCD3-216ENST00000487043 PRXQ9BXM0 1461 aa5.37□□□□□ -1.55
PTCD3-216ENST00000487043 TMEM265A0A087WTH1 108 aa5.36□□□□□ -1.55
PTCD3-216ENST00000487043 NPHP3-ACAD11A0A0J9YXS1 232 aa5.36□□□□□ -1.55
PTCD3-216ENST00000487043 ARVCFO00192 962 aa5.36□□□□□ -1.55
PTCD3-216ENST00000487043 FKTNO75072 461 aa5.36□□□□□ -1.55
PTCD3-216ENST00000487043 ZNF205O95201 554 aa5.36□□□□□ -1.55
PTCD3-216ENST00000487043 CEACAM5P06731 702 aa5.36□□□□□ -1.55
PTCD3-216ENST00000487043 BPIP17213 487 aa5.36□□□□□ -1.55
PTCD3-216ENST00000487043 PAMP19021 973 aa5.36□□□□□ -1.55
PTCD3-216ENST00000487043 TPP2P29144 1249 aaPredicted RBP5.36□□□□□ -1.55
PTCD3-216ENST00000487043 EPHB1P54762 984 aa5.36□□□□□ -1.55
PTCD3-216ENST00000487043 PCBP3P57721 371 aaKnown RBP5.36□□□□□ -1.55
PTCD3-216ENST00000487043 PAK1Q13153 545 aa5.36□□□□□ -1.55
PTCD3-216ENST00000487043 KCNAB2Q13303 367 aa5.36□□□□□ -1.55
PTCD3-216ENST00000487043 ANGEL2Q5VTE6 544 aaKnown RBP5.36□□□□□ -1.55
PTCD3-216ENST00000487043 EEF1DP3Q658K8 133 aa5.36□□□□□ -1.55
PTCD3-216ENST00000487043 LBX2Q6XYB7 198 aa5.36□□□□□ -1.55
PTCD3-216ENST00000487043 TSPYL5Q86VY4 417 aaPredicted RBP5.36□□□□□ -1.55
PTCD3-216ENST00000487043 RCBTB1Q8NDN9 531 aa5.36□□□□□ -1.55
PTCD3-216ENST00000487043 CCDC136Q96JN2 1154 aa5.36□□□□□ -1.55
PTCD3-216ENST00000487043 GPR101Q96P66 508 aaPredicted RBP5.36□□□□□ -1.55
PTCD3-216ENST00000487043 FOXP3Q9BZS1 431 aa5.36□□□□□ -1.55
PTCD3-216ENST00000487043 AP5S1Q9NUS5 200 aa5.36□□□□□ -1.55
PTCD3-216ENST00000487043 ZSWIM5Q9P217 1185 aa5.36□□□□□ -1.55
PTCD3-216ENST00000487043 GABBR1Q9UBS5 961 aa5.36□□□□□ -1.55
PTCD3-216ENST00000487043 TCFL5Q9UL49 500 aa5.36□□□□□ -1.55
PTCD3-216ENST00000487043 ZKSCAN5Q9Y2L8 839 aa5.36□□□□□ -1.55
PTCD3-216ENST00000487043 CARMIL1Q5VZK9 1371 aa5.36□□□□□ -1.55
PTCD3-216ENST00000487043 KIF21BO75037 1637 aa5.36□□□□□ -1.55
PTCD3-216ENST00000487043 ABCA5Q8WWZ7 1642 aa5.36□□□□□ -1.55
PTCD3-216ENST00000487043 ERICH3Q5RHP9 1530 aa5.35□□□□□ -1.55
PTCD3-216ENST00000487043 AQRO60306 1485 aaKnown RBP eCLIP5.35□□□□□ -1.555e-9■■■■□ 20
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms