RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 CYP39A1Q9NYL5 469 aa9.25□□□□□ -0.93
USP40-216ENST00000485943 KIAA1468Q9P260 1216 aa9.25□□□□□ -0.93
USP40-216ENST00000485943 NRBP1Q9UHY1 535 aa9.25□□□□□ -0.93
USP40-216ENST00000485943 ZNF236Q9UL36 1845 aa9.25□□□□□ -0.93
USP40-216ENST00000485943 SYNGAP1Q96PV0 1343 aa9.25□□□□□ -0.93
USP40-216ENST00000485943 RBBP6Q7Z6E9 1792 aaKnown RBP9.24□□□□□ -0.93
USP40-216ENST00000485943 C6orf222P0C671 652 aaPredicted RBP9.24□□□□□ -0.93
USP40-216ENST00000485943 MYCLP12524 364 aaPredicted RBP9.24□□□□□ -0.93
USP40-216ENST00000485943 SMARCA1P28370 1054 aa9.24□□□□□ -0.93
USP40-216ENST00000485943 CCND3P30281 292 aaPredicted RBP9.24□□□□□ -0.93
USP40-216ENST00000485943 ZNF76P36508 570 aa9.24□□□□□ -0.93
USP40-216ENST00000485943 CLK2P49760 499 aaKnown RBP9.24□□□□□ -0.93
USP40-216ENST00000485943 ALDH5A1P51649 535 aaPredicted RBP9.24□□□□□ -0.93
USP40-216ENST00000485943 NEK4P51957 841 aa9.24□□□□□ -0.93
USP40-216ENST00000485943 CAP1Q01518 475 aa9.24□□□□□ -0.93
USP40-216ENST00000485943 CNTN2Q02246 1040 aa9.24□□□□□ -0.93
USP40-216ENST00000485943 SSRP1Q08945 709 aaKnown RBP9.24□□□□□ -0.93
USP40-216ENST00000485943 TROAPQ12815 778 aa9.24□□□□□ -0.93
USP40-216ENST00000485943 TRIM32Q13049 653 aa9.24□□□□□ -0.93
USP40-216ENST00000485943 ACVR2BQ13705 512 aa9.24□□□□□ -0.93
USP40-216ENST00000485943 TRIM29Q14134 588 aa9.24□□□□□ -0.93
USP40-216ENST00000485943 ZNF792Q3KQV3 632 aa9.24□□□□□ -0.93
USP40-216ENST00000485943 GNPTABQ3T906 1256 aa9.24□□□□□ -0.93
USP40-216ENST00000485943 VARS2Q5ST30 1063 aaKnown RBP9.24□□□□□ -0.93
USP40-216ENST00000485943 PRAMEF19Q5SWL8 479 aa9.24□□□□□ -0.93
USP40-216ENST00000485943 SAMD3Q8N6K7 520 aa9.24□□□□□ -0.93
USP40-216ENST00000485943 ANKLE1Q8NAG6 615 aa9.24□□□□□ -0.93
USP40-216ENST00000485943 CCDC148Q8NFR7 591 aa9.24□□□□□ -0.93
USP40-216ENST00000485943 SPIRE2Q8WWL2 714 aa9.24□□□□□ -0.93
USP40-216ENST00000485943 RMDN3Q96TC7 470 aa9.24□□□□□ -0.93
USP40-216ENST00000485943 SLC26A6Q9BXS9 759 aa9.24□□□□□ -0.93
USP40-216ENST00000485943 TM6SF1Q9BZW5 370 aa9.24□□□□□ -0.93
USP40-216ENST00000485943 SENP2Q9HC62 589 aa9.24□□□□□ -0.93
USP40-216ENST00000485943 MAP3K20Q9NYL2 800 aaKnown RBP9.24□□□□□ -0.93
USP40-216ENST00000485943 NR2E3Q9Y5X4 410 aa9.24□□□□□ -0.93
USP40-216ENST00000485943 ZNF536O15090 1300 aa9.24□□□□□ -0.93
USP40-216ENST00000485943 MCM3APO60318 1980 aa9.23□□□□□ -0.93
USP40-216ENST00000485943 LOC102724159A0A0B4J2E5 919 aa9.23□□□□□ -0.93
USP40-216ENST00000485943 DDX11L8A8MPP1 907 aa9.23□□□□□ -0.93
USP40-216ENST00000485943 hCG_1984214I3L0E3 225 aa9.23□□□□□ -0.93
USP40-216ENST00000485943 PLEKHA8P1O95397 391 aa9.23□□□□□ -0.93
USP40-216ENST00000485943 EIF2AK2P19525 551 aaKnown RBP9.23□□□□□ -0.93
USP40-216ENST00000485943 CCND2P30279 289 aa9.23□□□□□ -0.93
USP40-216ENST00000485943 RCAN1P53805 252 aa9.23□□□□□ -0.93
USP40-216ENST00000485943 CHMP4BP1P59074 171 aa9.23□□□□□ -0.93
USP40-216ENST00000485943 EXOSC10Q01780 885 aaKnown RBP9.23□□□□□ -0.93
USP40-216ENST00000485943 TNFAIP2Q03169 654 aa9.23□□□□□ -0.93
USP40-216ENST00000485943 MCM6Q14566 821 aa9.23□□□□□ -0.93
USP40-216ENST00000485943 PWP2Q15269 919 aaKnown RBP9.23□□□□□ -0.93
USP40-216ENST00000485943 STXBP2Q15833 593 aa9.23□□□□□ -0.93
USP40-216ENST00000485943 DMRTA1Q5VZB9 504 aa9.23□□□□□ -0.93
USP40-216ENST00000485943 SLC30A10Q6XR72 485 aa9.23□□□□□ -0.93
USP40-216ENST00000485943 TMTC3Q6ZXV5 915 aa9.23□□□□□ -0.93
USP40-216ENST00000485943 CMTR1Q8N1G2 835 aaKnown RBP9.23□□□□□ -0.93
USP40-216ENST00000485943 ZNF713Q8N859 430 aaPredicted RBP9.23□□□□□ -0.93
USP40-216ENST00000485943 PCSK9Q8NBP7 692 aaKnown RBP9.23□□□□□ -0.93
USP40-216ENST00000485943 BICD2Q8TD16 824 aa9.23□□□□□ -0.93
USP40-216ENST00000485943 WASF1Q92558 559 aa9.23□□□□□ -0.93
USP40-216ENST00000485943 USP6NLQ92738 828 aa9.23□□□□□ -0.93
USP40-216ENST00000485943 SLC4A5Q9BY07 1137 aa9.23□□□□□ -0.93
USP40-216ENST00000485943 C22orf23Q9BZE7 217 aa9.23□□□□□ -0.93
USP40-216ENST00000485943 MAF1Q9H063 256 aa9.23□□□□□ -0.93
USP40-216ENST00000485943 C11orf49Q9H6J7 331 aa9.23□□□□□ -0.93
USP40-216ENST00000485943 RIOX1Q9H6W3 641 aa9.23□□□□□ -0.93
USP40-216ENST00000485943 PSTPIP2Q9H939 334 aa9.23□□□□□ -0.93
USP40-216ENST00000485943 BRMS1Q9HCU9 246 aa9.23□□□□□ -0.93
USP40-216ENST00000485943 C6orf50Q9HD87 102 aa9.23□□□□□ -0.93
USP40-216ENST00000485943 VTA1Q9NP79 307 aa9.23□□□□□ -0.93
USP40-216ENST00000485943 FLRT1Q9NZU1 646 aa9.23□□□□□ -0.93
USP40-216ENST00000485943 LIMD1Q9UGP4 676 aa9.23□□□□□ -0.93
USP40-216ENST00000485943 hCG_1642624A0A1W2PR95 340 aa9.22□□□□□ -0.93
USP40-216ENST00000485943 ARHGAP33O14559 1287 aa9.22□□□□□ -0.93
USP40-216ENST00000485943 CYBAP13498 195 aa9.22□□□□□ -0.93
USP40-216ENST00000485943 TAL1P17542 331 aaPredicted RBP9.22□□□□□ -0.93
USP40-216ENST00000485943 GNA11P29992 359 aa9.22□□□□□ -0.93
USP40-216ENST00000485943 HOXA13P31271 388 aaPredicted RBP9.22□□□□□ -0.93
USP40-216ENST00000485943 ADCY7P51828 1080 aa9.22□□□□□ -0.93
USP40-216ENST00000485943 NLRP5P59047 1200 aa9.22□□□□□ -0.93
USP40-216ENST00000485943 GNL2Q13823 731 aaKnown RBP9.22□□□□□ -0.93
USP40-216ENST00000485943 TTLL4Q14679 1199 aa9.22□□□□□ -0.93
USP40-216ENST00000485943 SEPT14Q6ZU15 432 aa9.22□□□□□ -0.93
USP40-216ENST00000485943 FBXO16Q8IX29 292 aaPredicted RBP9.22□□□□□ -0.93
USP40-216ENST00000485943 RGS22Q8NE09 1264 aa9.22□□□□□ -0.93
USP40-216ENST00000485943 SCFD2Q8WU76 684 aa9.22□□□□□ -0.93
USP40-216ENST00000485943 GPKOWQ92917 476 aaPredicted RBP eCLIP9.22□□□□□ -0.93
USP40-216ENST00000485943 PAWRQ96IZ0 340 aaKnown RBP9.22□□□□□ -0.93
USP40-216ENST00000485943 IWS1Q96ST2 819 aa9.22□□□□□ -0.93
USP40-216ENST00000485943 SENP6Q9GZR1 1112 aaPredicted RBP9.22□□□□□ -0.93
USP40-216ENST00000485943 PAK6Q9NQU5 681 aaPredicted RBP9.22□□□□□ -0.93
USP40-216ENST00000485943 KIF3AQ9Y496 699 aa9.22□□□□□ -0.93
USP40-216ENST00000485943 MRVI1Q9Y6F6 885 aa9.22□□□□□ -0.93
USP40-216ENST00000485943 V9GY48 417 aaPredicted RBP9.22□□□□□ -0.93
USP40-216ENST00000485943 NOP56O00567 594 aaKnown RBP9.21□□□□□ -0.94
USP40-216ENST00000485943 MARCH6O60337 910 aa9.21□□□□□ -0.94
USP40-216ENST00000485943 TXNP10599 105 aaKnown RBP9.21□□□□□ -0.94
USP40-216ENST00000485943 CPT1AP50416 773 aa9.21□□□□□ -0.94
USP40-216ENST00000485943 CCDC144BQ3MJ40 725 aa9.21□□□□□ -0.94
USP40-216ENST00000485943 GNASQ5JWF2 1037 aa9.21□□□□□ -0.94
USP40-216ENST00000485943 GJC2Q5T442 439 aaPredicted RBP9.21□□□□□ -0.94
USP40-216ENST00000485943 MCTP2Q6DN12 878 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms