RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 EDNRBP24530 442 aa13.92□□□□□ -0.18
SDC1-206ENST00000482879 TOB1P50616 345 aaPredicted RBP13.92□□□□□ -0.18
SDC1-206ENST00000482879 PRMT2P55345 433 aa13.92□□□□□ -0.18
SDC1-206ENST00000482879 MRPS9P82933 396 aaKnown RBP13.92□□□□□ -0.18
SDC1-206ENST00000482879 ZNF174Q15697 407 aa13.92□□□□□ -0.18
SDC1-206ENST00000482879 CCL14Q16627 93 aa13.92□□□□□ -0.18
SDC1-206ENST00000482879 TTC38Q5R3I4 469 aa13.92□□□□□ -0.18
SDC1-206ENST00000482879 MAMDC4Q6UXC1 1216 aa13.92□□□□□ -0.18
SDC1-206ENST00000482879 ARMCX2Q7L311 632 aa13.92□□□□□ -0.18
SDC1-206ENST00000482879 OTOP1Q7RTM1 612 aa13.92□□□□□ -0.18
SDC1-206ENST00000482879 MSL3Q8N5Y2 521 aaKnown RBP13.92□□□□□ -0.18
SDC1-206ENST00000482879 RAET1EQ8TD07 263 aa13.92□□□□□ -0.18
SDC1-206ENST00000482879 MORC4Q8TE76 937 aa13.92□□□□□ -0.18
SDC1-206ENST00000482879 NAP1L4Q99733 375 aaKnown RBP13.92□□□□□ -0.18
SDC1-206ENST00000482879 TINF2Q9BSI4 451 aa13.92□□□□□ -0.18
SDC1-206ENST00000482879 RTEL1Q9NZ71 1219 aa13.92□□□□□ -0.18
SDC1-206ENST00000482879 FLRT1Q9NZU1 646 aa13.92□□□□□ -0.18
SDC1-206ENST00000482879 ATP6V1DQ9Y5K8 247 aa13.92□□□□□ -0.18
SDC1-206ENST00000482879 EIF3JO75822 258 aaKnown RBP13.91□□□□□ -0.18
SDC1-206ENST00000482879 CIITAP33076 1130 aa13.91□□□□□ -0.18
SDC1-206ENST00000482879 IRF5Q13568 498 aa13.91□□□□□ -0.18
SDC1-206ENST00000482879 NBR1Q14596 966 aa13.91□□□□□ -0.18
SDC1-206ENST00000482879 OLFML2BQ68BL8 750 aa13.91□□□□□ -0.18
SDC1-206ENST00000482879 ZNF396Q96N95 335 aaPredicted RBP13.91□□□□□ -0.18
SDC1-206ENST00000482879 MXRA8Q9BRK3 442 aa13.91□□□□□ -0.18
SDC1-206ENST00000482879 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.91□□□□□ -0.18
SDC1-206ENST00000482879 SYNGAP1Q96PV0 1343 aa13.9□□□□□ -0.18
SDC1-206ENST00000482879 LRRC37A2A6NM11 1700 aa13.9□□□□□ -0.18
SDC1-206ENST00000482879 CYP3A7-CYP3A51PA0A087WV96 503 aa13.9□□□□□ -0.18
SDC1-206ENST00000482879 FAM86B1E9PN63 330 aa13.9□□□□□ -0.18
SDC1-206ENST00000482879 WNT7AO00755 349 aa13.9□□□□□ -0.18
SDC1-206ENST00000482879 ADCY3O60266 1144 aa13.9□□□□□ -0.18
SDC1-206ENST00000482879 STAM2O75886 525 aa13.9□□□□□ -0.18
SDC1-206ENST00000482879 TDP2O95551 362 aa13.9□□□□□ -0.18
SDC1-206ENST00000482879 SNAI1O95863 264 aaPredicted RBP13.9□□□□□ -0.18
SDC1-206ENST00000482879 FAM86B2P0C5J1 330 aa13.9□□□□□ -0.18
SDC1-206ENST00000482879 GCFC2P16383 781 aaKnown RBP13.9□□□□□ -0.18
SDC1-206ENST00000482879 CYP3A7P24462 503 aa13.9□□□□□ -0.18
SDC1-206ENST00000482879 MCM7P33993 719 aa13.9□□□□□ -0.18
SDC1-206ENST00000482879 CEP55Q53EZ4 464 aa13.9□□□□□ -0.18
SDC1-206ENST00000482879 PRR16Q569H4 304 aa13.9□□□□□ -0.18
SDC1-206ENST00000482879 MFSD14CQ5VZR4 134 aa13.9□□□□□ -0.18
SDC1-206ENST00000482879 PPP4R3AQ6IN85 833 aa13.9□□□□□ -0.18
SDC1-206ENST00000482879 MOXD1Q6UVY6 613 aa13.9□□□□□ -0.18
SDC1-206ENST00000482879 EEPD1Q7L9B9 569 aa13.9□□□□□ -0.18
SDC1-206ENST00000482879 PLA2G4DQ86XP0 818 aa13.9□□□□□ -0.18
SDC1-206ENST00000482879 TRMT44Q8IYL2 757 aaKnown RBP13.9□□□□□ -0.18
SDC1-206ENST00000482879 CYP2W1Q8TAV3 490 aa13.9□□□□□ -0.18
SDC1-206ENST00000482879 TFIP11Q9UBB9 837 aaKnown RBP13.9□□□□□ -0.18
SDC1-206ENST00000482879 DDX25Q9UHL0 483 aaKnown RBP13.9□□□□□ -0.18
SDC1-206ENST00000482879 PCDHB6Q9Y5E3 794 aa13.9□□□□□ -0.18
SDC1-206ENST00000482879 UBIAD1Q9Y5Z9 338 aa13.9□□□□□ -0.18
SDC1-206ENST00000482879 MEIS1O00470 390 aa13.89□□□□□ -0.19
SDC1-206ENST00000482879 ITGB5P18084 799 aa13.89□□□□□ -0.19
SDC1-206ENST00000482879 CYP2C19P33261 490 aa13.89□□□□□ -0.19
SDC1-206ENST00000482879 CEBPZQ03701 1054 aaKnown RBP13.89□□□□□ -0.19
SDC1-206ENST00000482879 DNM1Q05193 864 aaKnown RBP13.89□□□□□ -0.19
SDC1-206ENST00000482879 ATL3Q6DD88 541 aa13.89□□□□□ -0.19
SDC1-206ENST00000482879 SEPT14Q6ZU15 432 aa13.89□□□□□ -0.19
SDC1-206ENST00000482879 NIPA1Q7RTP0 329 aa13.89□□□□□ -0.19
SDC1-206ENST00000482879 NLRX1Q86UT6 975 aa13.89□□□□□ -0.19
SDC1-206ENST00000482879 TRIB2Q92519 343 aa13.89□□□□□ -0.19
SDC1-206ENST00000482879 MBOAT7Q96N66 472 aa13.89□□□□□ -0.19
SDC1-206ENST00000482879 WDR11Q9BZH6 1224 aa13.89□□□□□ -0.19
SDC1-206ENST00000482879 JADE2Q9NQC1 790 aa13.89□□□□□ -0.19
SDC1-206ENST00000482879 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.89□□□□□ -0.19
SDC1-206ENST00000482879 IGLV3-22A0A075B6J6 115 aa13.88□□□□□ -0.19
SDC1-206ENST00000482879 SLC37A4O43826 429 aa13.88□□□□□ -0.19
SDC1-206ENST00000482879 RGS20O76081 388 aa13.88□□□□□ -0.19
SDC1-206ENST00000482879 IGHA2P01877 340 aa13.88□□□□□ -0.19
SDC1-206ENST00000482879 ARP10275 920 aa13.88□□□□□ -0.19
SDC1-206ENST00000482879 ELNP15502 786 aa13.88□□□□□ -0.19
SDC1-206ENST00000482879 ORC2Q13416 577 aaPredicted RBP13.88□□□□□ -0.19
SDC1-206ENST00000482879 SF3A1Q15459 793 aaKnown RBP13.88□□□□□ -0.19
SDC1-206ENST00000482879 GNPTABQ3T906 1256 aa13.88□□□□□ -0.19
SDC1-206ENST00000482879 Q4G0T1 1027 aa13.88□□□□□ -0.19
SDC1-206ENST00000482879 PRAMEF19Q5SWL8 479 aa13.88□□□□□ -0.19
SDC1-206ENST00000482879 ANO1Q5XXA6 986 aa13.88□□□□□ -0.19
SDC1-206ENST00000482879 CTU1Q7Z7A3 348 aaKnown RBP13.88□□□□□ -0.19
SDC1-206ENST00000482879 FBXO16Q8IX29 292 aaPredicted RBP13.88□□□□□ -0.19
SDC1-206ENST00000482879 PXYLP1Q8TE99 480 aa13.88□□□□□ -0.19
SDC1-206ENST00000482879 TNPO1Q92973 898 aaKnown RBP13.88□□□□□ -0.19
SDC1-206ENST00000482879 GPRASP2Q96D09 838 aa13.88□□□□□ -0.19
SDC1-206ENST00000482879 CHAMP1Q96JM3 812 aa13.88□□□□□ -0.19
SDC1-206ENST00000482879 INPP4AQ96PE3 977 aaPredicted RBP13.88□□□□□ -0.19
SDC1-206ENST00000482879 USP28Q96RU2 1077 aa13.88□□□□□ -0.19
SDC1-206ENST00000482879 FTOQ9C0B1 505 aaKnown RBP eCLIP13.88□□□□□ -0.19
SDC1-206ENST00000482879 ABHD16BQ9H3Z7 469 aa13.88□□□□□ -0.19
SDC1-206ENST00000482879 VTA1Q9NP79 307 aa13.88□□□□□ -0.19
SDC1-206ENST00000482879 CNPY2Q9Y2B0 182 aa13.88□□□□□ -0.19
SDC1-206ENST00000482879 PTPN22Q9Y2R2 807 aa13.88□□□□□ -0.19
SDC1-206ENST00000482879 CLIC4Q9Y696 253 aa13.88□□□□□ -0.19
SDC1-206ENST00000482879 PTCH2Q9Y6C5 1203 aa13.88□□□□□ -0.19
SDC1-206ENST00000482879 DOCK5Q9H7D0 1870 aa13.88□□□□□ -0.19
SDC1-206ENST00000482879 MARCH6O60337 910 aa13.87□□□□□ -0.19
SDC1-206ENST00000482879 NEMFO60524 1076 aa13.87□□□□□ -0.19
SDC1-206ENST00000482879 NCLP19338 710 aaKnown RBP13.87□□□□□ -0.19
SDC1-206ENST00000482879 SETQ01105 290 aaPredicted RBP13.87□□□□□ -0.19
SDC1-206ENST00000482879 MTMR1Q13613 665 aa13.87□□□□□ -0.19
SDC1-206ENST00000482879 ACVR2BQ13705 512 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms