RNA–Protein interactions for RNA: ENST00000482056.2

C9orf3-218, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best)

Gene C9orf3, Length 1,951 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-218ENST00000482056 TMEM119Q4V9L6 283 aa17.05■□□□□ 0.32
C9orf3-218ENST00000482056 LRRC47Q8N1G4 583 aaKnown RBP17.05■□□□□ 0.32
C9orf3-218ENST00000482056 GOLGA6L1Q8N7Z2 621 aa17.05■□□□□ 0.32
C9orf3-218ENST00000482056 CUL5Q93034 780 aa17.05■□□□□ 0.32
C9orf3-218ENST00000482056 SUGCTQ9HAC7 445 aa17.05■□□□□ 0.32
C9orf3-218ENST00000482056 BMP2KQ9NSY1 1161 aaPredicted RBP17.05■□□□□ 0.32
C9orf3-218ENST00000482056 SUGT1Q9Y2Z0 365 aa17.05■□□□□ 0.32
C9orf3-218ENST00000482056 DAGLAQ9Y4D2 1042 aa17.05■□□□□ 0.32
C9orf3-218ENST00000482056 PCDHA13Q9Y5I0 950 aa17.05■□□□□ 0.32
C9orf3-218ENST00000482056 MYO3BQ8WXR4 1341 aa17.05■□□□□ 0.32
C9orf3-218ENST00000482056 C10orf71Q711Q0 1435 aa17.05■□□□□ 0.32
C9orf3-218ENST00000482056 AKR1B10O60218 316 aa17.04■□□□□ 0.32
C9orf3-218ENST00000482056 SRGAP2O75044 1071 aa17.04■□□□□ 0.32
C9orf3-218ENST00000482056 TNNT3P45378 269 aaPredicted RBP17.04■□□□□ 0.32
C9orf3-218ENST00000482056 KIF11P52732 1056 aa17.04■□□□□ 0.32
C9orf3-218ENST00000482056 MRPL12P52815 198 aaKnown RBP17.04■□□□□ 0.32
C9orf3-218ENST00000482056 DPP8Q6V1X1 898 aaPredicted RBP17.04■□□□□ 0.32
C9orf3-218ENST00000482056 TMC4Q7Z404 712 aa17.04■□□□□ 0.32
C9orf3-218ENST00000482056 TBC1D16Q8TBP0 767 aa17.04■□□□□ 0.32
C9orf3-218ENST00000482056 RUBCNQ92622 972 aa17.04■□□□□ 0.32
C9orf3-218ENST00000482056 DDX12PQ92771 950 aa17.04■□□□□ 0.32
C9orf3-218ENST00000482056 NT5C3AQ9H0P0 336 aa17.04■□□□□ 0.32
C9orf3-218ENST00000482056 GPCPD1Q9NPB8 672 aa17.04■□□□□ 0.32
C9orf3-218ENST00000482056 FAM207AQ9NSI2 230 aaPredicted RBP17.04■□□□□ 0.32
C9orf3-218ENST00000482056 THSD7AQ9UPZ6 1657 aa17.04■□□□□ 0.32
C9orf3-218ENST00000482056 KDM3AQ9Y4C1 1321 aa17.04■□□□□ 0.32
C9orf3-218ENST00000482056 POTEMA6NI47 508 aa17.04■□□□□ 0.32
C9orf3-218ENST00000482056 C6orf229H3BNL8 230 aa17.04■□□□□ 0.32
C9orf3-218ENST00000482056 LCA5LO95447 670 aa17.04■□□□□ 0.32
C9orf3-218ENST00000482056 ZNF543Q08ER8 600 aa17.04■□□□□ 0.32
C9orf3-218ENST00000482056 PICALMQ13492 652 aa17.04■□□□□ 0.32
C9orf3-218ENST00000482056 LEKR1Q6ZMV7 388 aa17.04■□□□□ 0.32
C9orf3-218ENST00000482056 MYOCDQ8IZQ8 938 aa17.04■□□□□ 0.32
C9orf3-218ENST00000482056 GOLGA5Q8TBA6 731 aa17.04■□□□□ 0.32
C9orf3-218ENST00000482056 GLT8D2Q9H1C3 349 aa17.04■□□□□ 0.32
C9orf3-218ENST00000482056 NUCKS1Q9H1E3 243 aaKnown RBP17.04■□□□□ 0.32
C9orf3-218ENST00000482056 SH2D4AQ9H788 454 aa17.04■□□□□ 0.32
C9orf3-218ENST00000482056 DDX25Q9UHL0 483 aaKnown RBP17.04■□□□□ 0.32
C9orf3-218ENST00000482056 IGKV6D-41A0A0C4DH26 115 aa17.03■□□□□ 0.32
C9orf3-218ENST00000482056 A0A0U1RQG5 324 aaPredicted RBP17.03■□□□□ 0.32
C9orf3-218ENST00000482056 SLC26A4O43511 780 aa17.03■□□□□ 0.32
C9orf3-218ENST00000482056 SERPINB2P05120 415 aa17.03■□□□□ 0.32
C9orf3-218ENST00000482056 PRLRP16471 622 aa17.03■□□□□ 0.32
C9orf3-218ENST00000482056 EIF4A3P38919 411 aaKnown RBP17.03■□□□□ 0.32
C9orf3-218ENST00000482056 GYS2P54840 703 aa17.03■□□□□ 0.32
C9orf3-218ENST00000482056 GABPAQ06546 454 aa17.03■□□□□ 0.32
C9orf3-218ENST00000482056 GPATCH4Q5T3I0 446 aaKnown RBP17.03■□□□□ 0.32
C9orf3-218ENST00000482056 CACNA2D4Q7Z3S7 1137 aa17.03■□□□□ 0.32
C9orf3-218ENST00000482056 TANGO6Q9C0B7 1094 aa17.03■□□□□ 0.32
C9orf3-218ENST00000482056 ARHGAP20Q9P2F6 1191 aa17.03■□□□□ 0.32
C9orf3-218ENST00000482056 SNX12Q9UMY4 172 aa17.03■□□□□ 0.32
C9orf3-218ENST00000482056 FAN1Q9Y2M0 1017 aa17.03■□□□□ 0.32
C9orf3-218ENST00000482056 AKR1B1P15121 316 aa17.02■□□□□ 0.32
C9orf3-218ENST00000482056 ITIH3Q06033 890 aa17.02■□□□□ 0.32
C9orf3-218ENST00000482056 ZSCAN26Q16670 478 aa17.02■□□□□ 0.32
C9orf3-218ENST00000482056 RRAGAQ7L523 313 aa17.02■□□□□ 0.32
C9orf3-218ENST00000482056 ADGRF4Q8IZF3 695 aa17.02■□□□□ 0.32
C9orf3-218ENST00000482056 CRAMP1Q96RY5 1269 aa17.02■□□□□ 0.32
C9orf3-218ENST00000482056 JMJD4Q9H9V9 463 aa17.02■□□□□ 0.32
C9orf3-218ENST00000482056 LUC7LQ9NQ29 371 aaKnown RBP17.02■□□□□ 0.32
C9orf3-218ENST00000482056 RNF216Q9NWF9 866 aaPredicted RBP17.02■□□□□ 0.32
C9orf3-218ENST00000482056 POLLQ9UGP5 575 aa17.02■□□□□ 0.32
C9orf3-218ENST00000482056 LRRIQ3A6PVS8 624 aaPredicted RBP17.02■□□□□ 0.31
C9orf3-218ENST00000482056 GNA14O95837 355 aa17.02■□□□□ 0.31
C9orf3-218ENST00000482056 TCP1P17987 556 aaKnown RBP17.02■□□□□ 0.31
C9orf3-218ENST00000482056 AARSP49588 968 aaKnown RBP eCLIP17.02■□□□□ 0.31
C9orf3-218ENST00000482056 FKBP3Q00688 224 aaKnown RBP17.02■□□□□ 0.31
C9orf3-218ENST00000482056 EHHADHQ08426 723 aa17.02■□□□□ 0.31
C9orf3-218ENST00000482056 LRRC55Q6ZSA7 311 aa17.02■□□□□ 0.31
C9orf3-218ENST00000482056 SERPINB13Q9UIV8 391 aa17.02■□□□□ 0.31
C9orf3-218ENST00000482056 DUSP10Q9Y6W6 482 aa17.02■□□□□ 0.31
C9orf3-218ENST00000482056 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.01■□□□□ 0.31
C9orf3-218ENST00000482056 LRRC53A6NM62 1247 aa17.01■□□□□ 0.31
C9orf3-218ENST00000482056 ZNF263O14978 683 aa17.01■□□□□ 0.31
C9orf3-218ENST00000482056 PLEKP08567 350 aaPredicted RBP17.01■□□□□ 0.31
C9orf3-218ENST00000482056 HOXA10P31260 410 aaPredicted RBP17.01■□□□□ 0.31
C9orf3-218ENST00000482056 ACTN2P35609 894 aa17.01■□□□□ 0.31
C9orf3-218ENST00000482056 EIF6P56537 245 aaKnown RBP17.01■□□□□ 0.31
C9orf3-218ENST00000482056 GTF2IP78347 998 aa17.01■□□□□ 0.31
C9orf3-218ENST00000482056 COASYQ13057 564 aa17.01■□□□□ 0.31
C9orf3-218ENST00000482056 CCDC40Q4G0X9 1142 aa17.01■□□□□ 0.31
C9orf3-218ENST00000482056 PDXDC1Q6P996 788 aa17.01■□□□□ 0.31
C9orf3-218ENST00000482056 CRACR2AQ9BSW2 395 aa17.01■□□□□ 0.31
C9orf3-218ENST00000482056 COA1Q9GZY4 146 aa17.01■□□□□ 0.31
C9orf3-218ENST00000482056 PANK4Q9NVE7 773 aa17.01■□□□□ 0.31
C9orf3-218ENST00000482056 PCDHA12Q9UN75 941 aa17.01■□□□□ 0.31
C9orf3-218ENST00000482056 HYOU1Q9Y4L1 999 aa17.01■□□□□ 0.31
C9orf3-218ENST00000482056 COL4A3BPQ9Y5P4 624 aa17.01■□□□□ 0.31
C9orf3-218ENST00000482056 SSU72P8A0A1W2PR75 194 aa17■□□□□ 0.31
C9orf3-218ENST00000482056 ZBTB5O15062 677 aa17■□□□□ 0.31
C9orf3-218ENST00000482056 N4BP1O75113 896 aaKnown RBP17■□□□□ 0.31
C9orf3-218ENST00000482056 HLA-DOAP06340 250 aa17■□□□□ 0.31
C9orf3-218ENST00000482056 MAGEA1P43355 309 aa17■□□□□ 0.31
C9orf3-218ENST00000482056 CLK2P49760 499 aaKnown RBP17■□□□□ 0.31
C9orf3-218ENST00000482056 UBE2SQ16763 222 aa17■□□□□ 0.31
C9orf3-218ENST00000482056 FAM26FQ5R3K3 315 aa17■□□□□ 0.31
C9orf3-218ENST00000482056 ZNF572Q7Z3I7 529 aaPredicted RBP17■□□□□ 0.31
C9orf3-218ENST00000482056 KRT26Q7Z3Y9 468 aa17■□□□□ 0.31
C9orf3-218ENST00000482056 CCDC65Q8IXS2 484 aa17■□□□□ 0.31
C9orf3-218ENST00000482056 MMGT1Q8N4V1 131 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms